Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A623T48 Lonicera japonica HOM05D002878 ORTHO05D003649 1.7e-71 272.7 152 100.0
vmacro13619 Vaccinium macrocarpon HOM05D002878 ORTHO05D003649 7.2e-30 134.4 149 54.4
Rhsim07G0050700 Rhododendron simsii HOM05D001227 ORTHO05D001082 9.4e-30 134.0 116 62.1
Dinv43928 Davidia involucrata HOM05D002878 ORTHO05D003649 1.4e-28 130.2 149 52.3
Actinidia31701 Actinidia chinensis HOM05D002878 ORTHO05D003649 1.8e-28 129.8 139 52.5
GSVIVG01001372001 Vitis vinifera HOM05D002878 ORTHO05D003649 5.7e-27 124.8 86 74.4
CSS0041624 Camellia sinensis var. sinensis HOM05D002878 ORTHO05D003649 7.5e-27 124.4 116 57.8
TAR633G2681 Trochodendron aralioides HOM05D002878 ORTHO05D003649 1.7e-26 123.2 148 48.6
Medtr4g022850 Medicago truncatula HOM05D002878 ORTHO05D003649 4.8e-26 121.7 81 72.8
Atru.chr11.2692 Acer truncatum HOM05D002878 ORTHO05D003649 1.8e-25 119.8 144 50.7
Manes.10G150700 Manihot esculenta HOM05D002878 ORTHO05D003649 3.1e-25 119.0 81 74.1
Potri.001G229100 Populus trichocarpa HOM05D002878 ORTHO05D003649 5.4e-25 118.2 153 44.4
QL04p003128 Quercus lobata HOM05D002878 ORTHO05D003649 7.0e-25 117.9 140 49.3
QL04p000093 Quercus lobata HOM05D002878 ORTHO05D003649 9.1e-25 117.5 81 72.8
Sabra16G0136700 Salix brachista HOM05D002878 ORTHO05D003649 1.6e-24 116.7 153 45.1
DCAR_015695 Daucus carota HOM05D002878 ORTHO05D003649 3.5e-24 115.5 81 71.6
Lalb_Chr01g0008141 Lupinus albus HOM05D002878 ORTHO05D003649 4.5e-24 115.2 81 71.6
Lj3g0027459 Lotus japonicus HOM05D002878 ORTHO05D003649 5.9e-24 114.8 81 72.8
Glyma.09G000600 Glycine max HOM05D002878 ORTHO05D003649 2.2e-23 112.8 81 69.1
Phvul.011G214600 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 2.2e-23 112.8 81 70.4
Prupe.2G004500 Prunus persica HOM05D002878 ORTHO05D003649 5.0e-23 111.7 131 48.9
MBI01_g33890_MAGBIO Magnolia biondii HOM05D002878 ORTHO05D003649 6.5e-23 111.3 143 45.5
MD07G1003000 Malus domestica HOM05D002878 ORTHO05D003649 8.5e-23 110.9 81 69.1
VMungo1127G0209 Vigna mungo HOM05D002878 ORTHO05D003649 8.5e-23 110.9 81 69.1
PSO384G3105 Papaver somniferum HOM05D002878 ORTHO05D003649 1.1e-22 110.5 90 62.2
Glyma.12G240501 Glycine max HOM05D002878 ORTHO05D003649 1.9e-22 109.8 133 47.4
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 3.2e-22 109.0 151 42.4
AT5G67030 Arabidopsis thaliana HOM05D002878 ORTHO05D003649 5.5e-22 108.2 88 62.5
Duzib147G1525 Durio zibethinus HOM05D002878 ORTHO05D003649 5.5e-22 108.2 88 61.4
Gorai.007G213500 Gossypium raimondii HOM05D002878 ORTHO05D003649 7.2e-22 107.8 88 62.5
HanXRQChr04g0117341 Helianthus annuus HOM05D002878 ORTHO05D003649 7.2e-22 107.8 152 41.4
AL8G44330 Arabidopsis lyrata HOM05D002878 ORTHO05D003649 9.5e-22 107.5 88 60.2
Carub.0008s2747 Capsella rubella HOM05D002878 ORTHO05D003649 9.5e-22 107.5 88 60.2
ECA236G1248 Erigeron canadensis HOM05D002878 ORTHO05D003649 9.5e-22 107.5 80 67.5
EL10Ac6g15742 Beta vulgaris HOM05D002878 ORTHO05D003649 1.2e-21 107.1 88 61.4
CANSAT01G1312 Cannabis sativa HOM05D002878 ORTHO05D003649 1.2e-21 107.1 88 63.6
CBR_g2783 Chara braunii HOM05D002878 ORTHO05D003649 1.2e-21 107.1 88 60.2
Duzib187G0827 Durio zibethinus HOM05D002878 ORTHO05D003649 1.2e-21 107.1 88 60.2
GSVIVG01022128001 Vitis vinifera HOM05D002878 ORTHO05D003649 1.2e-21 107.1 88 59.1
CARHR280630 Cardamine hirsuta HOM05D002878 ORTHO05D003649 1.6e-21 106.7 88 60.2
Gohir.A11G192600 Gossypium hirsutum HOM05D002878 ORTHO05D003649 1.6e-21 106.7 88 61.4
Aqoxy5G01226 Aquilegia oxysepala HOM05D002878 ORTHO05D003649 2.1e-21 106.3 88 61.4
Os04g0448900 Oryza sativa ssp. japonica HOM05D002878 ORTHO05D003649 2.1e-21 106.3 88 61.4
Sabra05G0112100 Salix brachista HOM05D002878 ORTHO05D003649 2.1e-21 106.3 82 63.4
SalBow5G1901 Salvia bowleyana HOM05D002878 ORTHO05D003649 2.1e-21 106.3 88 62.5
Hund16322 Selenicereus undatus HOM05D002878 ORTHO05D003649 2.1e-21 106.3 88 61.4
unitig_27.g25327 Utricularia gibba HOM05D002878 ORTHO05D003649 2.1e-21 106.3 88 62.5
Aa31LG1G15560 Aethionema arabicum HOM05D002878 ORTHO05D003649 2.8e-21 105.9 88 61.4
BcaB04g20078 Brassica carinata HOM05D002878 ORTHO05D003649 2.8e-21 105.9 82 62.2
Migut.B01365 Erythranthe guttata HOM05D002878 ORTHO05D003649 2.8e-21 105.9 136 46.3
Thhalv10003769m.g Eutrema salsugineum HOM05D002878 ORTHO05D003649 2.8e-21 105.9 88 60.2
FvH4_1g16080 Fragaria vesca HOM05D002878 ORTHO05D003649 2.8e-21 105.9 88 61.4
FAN19G0778 Fragaria x ananassa HOM05D002878 ORTHO05D003649 2.8e-21 105.9 88 61.4
FAN23G1030 Fragaria x ananassa HOM05D002878 ORTHO05D003649 2.8e-21 105.9 88 61.4
FAN26G1304 Fragaria x ananassa HOM05D002878 ORTHO05D003649 2.8e-21 105.9 88 61.4
FAN28G1157 Fragaria x ananassa HOM05D002878 ORTHO05D003649 2.8e-21 105.9 88 61.4
MD02G1318300 Malus domestica HOM05D002878 ORTHO05D003649 2.8e-21 105.9 86 64.0
Phvul.003G243800 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 2.8e-21 105.9 88 60.2
Thecc.01G056500 Theobroma cacao HOM05D002878 ORTHO05D003649 2.8e-21 105.9 88 60.2
TAR628G0235 Trochodendron aralioides HOM05D002878 ORTHO05D003649 2.8e-21 105.9 88 60.2
BcaC04g23185 Brassica carinata HOM05D002878 ORTHO05D003649 3.6e-21 105.5 88 60.2
A09p09580 Brassica napus HOM05D002878 ORTHO05D003649 3.6e-21 105.5 88 60.2
C09p11330 Brassica napus HOM05D002878 ORTHO05D003649 3.6e-21 105.5 88 60.2
BolC9t54020H Brassica oleracea HOM05D002878 ORTHO05D003649 3.6e-21 105.5 88 60.2
BraA09t36606Z Brassica rapa HOM05D002878 ORTHO05D003649 3.6e-21 105.5 88 60.2
Eucgr.I00922 Eucalyptus grandis HOM05D002878 ORTHO05D003649 3.6e-21 105.5 88 60.2
TAR376G0143 Trochodendron aralioides HOM05D002878 ORTHO05D003649 3.6e-21 105.5 88 60.2
VMungo0251G0371 Vigna mungo HOM05D002878 ORTHO05D003649 3.6e-21 105.5 88 60.2
arahy.Tifrunner.gnm1.ann1.5ITW1B Arachis hypogaea HOM05D002878 ORTHO05D003649 4.7e-21 105.1 88 60.2
arahy.Tifrunner.gnm1.ann1.H1IQ00 Arachis hypogaea HOM05D002878 ORTHO05D003649 4.7e-21 105.1 88 60.2
AUR62001926 Chenopodium quinoa HOM05D002878 ORTHO05D003649 4.7e-21 105.1 88 60.2
AUR62003884 Chenopodium quinoa HOM05D002878 ORTHO05D003649 4.7e-21 105.1 88 60.2
Cre02.g082550 Chlamydomonas reinhardtii HOM05D002878 ORTHO05D003649 4.7e-21 105.1 88 59.1
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 4.7e-21 105.1 88 59.1
Psat0s1281g0080 Pisum sativum HOM05D002878 ORTHO05D003649 4.7e-21 105.1 88 60.2
SalBow1G5413 Salvia bowleyana HOM05D002878 ORTHO05D003649 4.7e-21 105.1 88 61.4
SGA_v2.0_scaffold15G07306 Striga asiatica HOM05D002878 ORTHO05D003649 4.7e-21 105.1 88 60.2
TWI09G0920 Tripterygium wilfordii HOM05D002878 ORTHO05D003649 4.7e-21 105.1 88 59.1
ATR0605G380 Amborella trichopoda HOM05D002878 ORTHO05D003649 6.1e-21 104.8 81 66.7
Migut.H00431 Erythranthe guttata HOM05D002878 ORTHO05D003649 6.1e-21 104.8 88 60.2
Glyma.17G174500 Glycine max HOM05D002878 ORTHO05D003649 6.1e-21 104.8 88 59.1
Mapoly0028s0084 Marchantia polymorpha HOM05D002878 ORTHO05D003649 6.1e-21 104.8 88 59.1
Oeu031955.2 Olea europaea HOM05D002878 ORTHO05D003649 6.1e-21 104.8 88 59.1
Potri.005G138400 Populus trichocarpa HOM05D002878 ORTHO05D003649 6.1e-21 104.8 88 60.2
Prupe.7G133100 Prunus persica HOM05D002878 ORTHO05D003649 6.1e-21 104.8 88 61.4
QL06p041333 Quercus lobata HOM05D002878 ORTHO05D003649 6.1e-21 104.8 88 60.2
Rhsim10G0117200 Rhododendron simsii HOM05D002878 ORTHO05D003649 6.1e-21 104.8 88 60.2
Sed0023782 Sechium edule HOM05D002878 ORTHO05D003649 6.1e-21 104.8 88 59.1
Ah.03g145010 Amaranthus hybridus HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 59.1
ATR1126G066 Amborella trichopoda HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 59.1
MSTRG.23744 Avicennia marina HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 60.2
MSTRG.2882 Avicennia marina HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 60.2
BcaB02g09963 Brassica carinata HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 60.2
BcaC04g23187 Brassica carinata HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 59.1
BcaC04g23188 Brassica carinata HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 59.1
BcaC06g34781 Brassica carinata HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 60.2
A07p16900 Brassica napus HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 60.2
C07p24710 Brassica napus HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 60.2
BolC7t42992H Brassica oleracea HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 60.2
BraA07t29416Z Brassica rapa HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 60.2
CSS0031288 Camellia sinensis var. sinensis HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 60.2
CiPaw.01G017900 Carya illinoinensis HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 59.1
Cc07_g06010 Coffea canephora HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 58.0
MD15G1284500 Malus domestica HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 61.4
Potri.007G044300 Populus trichocarpa HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 60.2
Sabra07G0039100 Salix brachista HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 59.1
THA.LOC104819235 Tarenaya hassleriana HOM05D002878 ORTHO05D003649 8.0e-21 104.4 88 59.1
Actinidia16481 Actinidia chinensis HOM05D002878 ORTHO05D003649 1.0e-20 104.0 88 59.1
Cfa004025 Carpinus fangiana HOM05D002878 ORTHO05D003649 1.0e-20 104.0 88 59.1
CDE10G0029 Ceratophyllum demersum HOM05D002878 ORTHO05D003649 1.0e-20 104.0 88 59.1
Ca_22162_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 1.0e-20 104.0 88 59.1
Lj4g0006017 Lotus japonicus HOM05D002878 ORTHO05D003649 1.0e-20 104.0 88 60.2
MD02G1172400 Malus domestica HOM05D002878 ORTHO05D003649 1.0e-20 104.0 88 60.2
QL07p005912 Quercus lobata HOM05D002878 ORTHO05D003649 1.0e-20 104.0 81 65.4
TPR.G19064 Trifolium pratense HOM05D002878 ORTHO05D003649 1.0e-20 104.0 88 59.1
Dinv39845 Davidia involucrata HOM05D002878 ORTHO05D003649 1.4e-20 103.6 88 60.2
Glyma.11G055700 Glycine max HOM05D002878 ORTHO05D003649 1.4e-20 103.6 88 59.1
HanXRQChr12g0378831 Helianthus annuus HOM05D002878 ORTHO05D003649 1.4e-20 103.6 88 59.1
Manes.13G124100 Manihot esculenta HOM05D002878 ORTHO05D003649 1.4e-20 103.6 88 58.0
RcHm_v2.0_Chr2g0105701 Rosa chinensis HOM05D002878 ORTHO05D003649 1.4e-20 103.6 88 60.2
Sed0027368 Sechium edule HOM05D002878 ORTHO05D003649 1.4e-20 103.6 88 60.2
Atru.chr3.325 Acer truncatum HOM05D002878 ORTHO05D003649 1.8e-20 103.2 88 58.0
CAN.G660.9 Capsicum annuum HOM05D002878 ORTHO05D003649 1.8e-20 103.2 88 59.1
Cpa.g.sc55.146 Carica papaya HOM05D002878 ORTHO05D003649 1.8e-20 103.2 88 59.1
Ciclev10025089m.g Citrus clementina HOM05D002878 ORTHO05D003649 1.8e-20 103.2 88 59.1
MELO3C020872.2 Cucumis melo HOM05D002878 ORTHO05D003649 1.8e-20 103.2 88 58.0
Lj4C149T12 Lonicera japonica HOM05D002878 ORTHO05D003649 1.8e-20 103.2 88 59.1
Lalb_Chr00c02g0404101 Lupinus albus HOM05D002878 ORTHO05D003649 1.8e-20 103.2 88 58.0
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 1.8e-20 103.2 88 59.1
Nitab4.5_0002440g0040 Nicotiana tabacum HOM05D002878 ORTHO05D003649 1.8e-20 103.2 88 59.1
Phvul.002G018700 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 1.8e-20 103.2 88 59.1
Sp2g29640 Schrenkiella parvula HOM05D002878 ORTHO05D003649 1.8e-20 103.2 88 60.2
Sc07g0000780 Simmondsia chinensis HOM05D002878 ORTHO05D003649 1.8e-20 103.2 88 60.2
Solyc02g090890.4 Solanum lycopersicum HOM05D002878 ORTHO05D003649 1.8e-20 103.2 88 60.2
Zm00001eb081460 Zea mays HOM05D002878 ORTHO05D003649 1.8e-20 103.2 88 60.2
arahy.Tifrunner.gnm1.ann1.A5JFP2 Arachis hypogaea HOM05D002878 ORTHO05D003649 2.3e-20 102.8 88 58.0
arahy.Tifrunner.gnm1.ann1.MHSG3V Arachis hypogaea HOM05D002878 ORTHO05D003649 2.3e-20 102.8 88 58.0
Lalb_Chr16g0378561 Lupinus albus HOM05D002878 ORTHO05D003649 2.3e-20 102.8 88 59.1
Pp3c12_10330 Physcomitrium patens HOM05D002878 ORTHO05D003649 2.3e-20 102.8 88 60.2
Psat2g167360 Pisum sativum HOM05D002878 ORTHO05D003649 2.3e-20 102.8 88 58.0
PGR004G0880 Punica granatum HOM05D002878 ORTHO05D003649 2.3e-20 102.8 88 56.8
SMO134G0128 Selaginella moellendorffii HOM05D002878 ORTHO05D003649 2.3e-20 102.8 88 58.0
Ca_24768_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 3.0e-20 102.4 88 58.0
MBI03_g13473_MAGBIO Magnolia biondii HOM05D002878 ORTHO05D003649 3.0e-20 102.4 88 58.0
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 3.0e-20 102.4 88 59.1
HPP92_010971 Vanilla planifolia HOM05D002878 ORTHO05D003649 3.0e-20 102.4 88 58.0
Ciclev10027323m.g Citrus clementina HOM05D002878 ORTHO05D003649 4.0e-20 102.1 88 59.1
CsaV3_2G016630 Cucumis sativus L. HOM05D002878 ORTHO05D003649 4.0e-20 102.1 88 56.8
Pp3c4_13840 Physcomitrium patens HOM05D002878 ORTHO05D003649 4.0e-20 102.1 88 59.1
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 4.0e-20 102.1 88 59.1
Medtr5g017350 Medicago truncatula HOM05D002878 ORTHO05D003649 5.2e-20 101.7 88 58.0
VMungo1215G2613 Vigna mungo HOM05D002878 ORTHO05D003649 5.2e-20 101.7 88 56.8
DCAR_025735 Daucus carota HOM05D002878 ORTHO05D003649 6.8e-20 101.3 88 56.8
Lj2g0007356 Lotus japonicus HOM05D002878 ORTHO05D003649 6.8e-20 101.3 88 56.8
PSO170G1040 Papaver somniferum HOM05D002878 ORTHO05D003649 6.8e-20 101.3 88 58.0
PSO210G3686 Papaver somniferum HOM05D002878 ORTHO05D003649 6.8e-20 101.3 88 58.0
ECA246G0578 Erigeron canadensis HOM05D002878 ORTHO05D003649 8.8e-20 100.9 88 58.0
SEGI_14380 Sequoiadendron giganteum HOM05D002878 ORTHO05D003649 8.8e-20 100.9 88 58.0
ClCG02G012500 Citrullus lanatus HOM05D002878 ORTHO05D003649 1.2e-19 100.5 88 56.8
Migut.K00348 Erythranthe guttata HOM05D002878 ORTHO05D003649 1.2e-19 100.5 79 63.3
Lsat_1_v5_gn_9_111181 Lactuca sativa HOM05D002878 ORTHO05D003649 1.5e-19 100.1 81 63.0
Lsat_1_v5_gn_3_90761 Lactuca sativa HOM05D002878 ORTHO05D003649 2.0e-19 99.8 88 58.0
Nn5g30293 Nelumbo nucifera HOM05D002878 ORTHO05D003649 2.0e-19 99.8 88 56.8
TPR.G30697 Trifolium pratense HOM05D002878 ORTHO05D003649 2.0e-19 99.8 88 56.8
Migut.K00767 Erythranthe guttata HOM05D002878 ORTHO05D003649 3.4e-19 99.0 88 58.0
Zm00001eb081470 Zea mays HOM05D002878 ORTHO05D003649 9.8e-19 97.4 80 57.5
Os04g0448950 Oryza sativa ssp. japonica HOM05D002878 ORTHO05D003649 1.3e-18 97.1 80 57.5
Dinv05186 Davidia involucrata HOM05D002878 ORTHO05D003649 3.7e-18 95.5 76 63.2
Medtr4g134870 Medicago truncatula HOM05D002878 ORTHO05D003649 6.3e-18 94.7 80 57.5
Eucgr.I00923 Eucalyptus grandis HOM05D002878 ORTHO05D003649 1.8e-17 93.2 80 56.2
SGA_v2.0_scaffold260G45879 Striga asiatica HOM05D002878 ORTHO05D003649 1.8e-17 93.2 80 62.5
Dinv32074 Davidia involucrata HOM05D002878 ORTHO05D003649 9.2e-17 90.9 76 60.5
Dinv30763 Davidia involucrata HOM05D002878 ORTHO05D003649 3.5e-16 89.0 74 60.8
Migut.B01363 Erythranthe guttata HOM05D002878 ORTHO05D003649 3.3e-14 82.4 81 51.9
CARHR126560 Cardamine hirsuta HOM05D002878 ORTHO05D003649 4.7e-13 78.6 69 55.1
Glyma.01G186202 Glycine max HOM05D002878 ORTHO05D003649 1.2e-11 73.9 63 55.6
CARHR217720 Cardamine hirsuta HOM05D002878 ORTHO05D003649 3.7e-10 68.9 60 53.3
MCO16G227 Micromonas commoda HOM05D002878 ORTHO05D003649 3.5e-08 62.4 88 42.0
Prupe.2G004400 Prunus persica HOM05D002878 ORTHO05D003649 7.3e-06 54.7 40 57.5
Zm00001eb302340 Zea mays HOM05D000113 ORTHO05D001108 7.3e-06 54.7 56 53.6


User provided reference genes

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