Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 0.0e+00 3513.4 1818 100.0
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 0.0e+00 2167.9 1829 65.7
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 0.0e+00 2143.6 1901 62.8
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 0.0e+00 2055.0 1862 61.4
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 2047.3 1875 61.0
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 0.0e+00 2030.4 1770 63.3
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 2007.3 1858 60.0
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 1989.5 1862 59.8
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 1973.0 1862 59.9
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 0.0e+00 1956.8 1835 59.9
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 0.0e+00 1941.4 1836 60.2
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 0.0e+00 1941.0 1864 58.4
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 0.0e+00 1939.1 1872 58.2
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 0.0e+00 1932.5 1872 58.4
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 0.0e+00 1906.0 1834 59.1
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1901.3 1826 57.9
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1895.6 1830 58.3
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 0.0e+00 1895.6 1943 56.4
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 0.0e+00 1887.8 1786 59.0
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 1884.0 1863 57.7
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1880.5 1845 57.1
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 0.0e+00 1877.4 1824 57.6
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 0.0e+00 1875.9 1854 57.1
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1870.1 1911 55.7
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 1862.4 1844 56.8
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 0.0e+00 1843.6 1822 57.9
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 0.0e+00 1842.0 1859 55.5
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 0.0e+00 1839.7 1887 55.1
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 0.0e+00 1803.1 1850 55.0
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 0.0e+00 1797.7 1872 55.6
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 1781.5 1855 54.5
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 1780.8 1857 54.6
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 1771.5 1864 53.9
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 0.0e+00 1770.7 1877 54.1
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 0.0e+00 1759.6 1826 55.9
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 0.0e+00 1756.9 1830 53.2
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 0.0e+00 1748.0 1821 54.0
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1747.3 1869 53.8
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1746.1 1747 57.1
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1745.3 1752 57.3
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 1744.2 1864 53.6
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 0.0e+00 1743.4 1809 56.2
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 0.0e+00 1731.1 1817 55.2
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 0.0e+00 1717.6 1882 53.1
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 0.0e+00 1714.5 1834 52.7
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 0.0e+00 1714.5 1834 53.7
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 1714.1 1838 53.0
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 0.0e+00 1713.7 1547 60.9
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 0.0e+00 1712.6 1835 53.2
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 0.0e+00 1698.7 1864 52.7
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 0.0e+00 1697.9 1785 53.6
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 0.0e+00 1695.2 1830 52.1
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 0.0e+00 1693.3 1832 52.6
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1673.7 1866 51.6
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 0.0e+00 1669.1 1872 51.9
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 0.0e+00 1664.8 1819 51.8
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 0.0e+00 1662.1 1874 51.5
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 0.0e+00 1658.3 1858 51.6
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 0.0e+00 1657.9 1856 51.7
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 0.0e+00 1646.3 1853 51.4
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 0.0e+00 1635.5 1833 51.9
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 0.0e+00 1597.4 1804 52.7
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 0.0e+00 1593.9 1507 58.6
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1528.8 1932 48.3
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 0.0e+00 1515.0 1846 49.0
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 0.0e+00 1512.7 1875 49.2
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 0.0e+00 1471.8 1808 48.3
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 0.0e+00 1445.3 1864 47.0
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 0.0e+00 1427.5 1854 47.0
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1356.3 1627 50.2
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1320.1 1549 50.5
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 0.0e+00 1300.8 1873 43.8
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 0.0e+00 1297.0 1834 42.7
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1279.2 1537 50.0
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 0.0e+00 1270.0 1544 49.3
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 0.0e+00 1257.3 1387 51.5
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 0.0e+00 1255.7 1618 46.1
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1185.6 1397 49.0
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 4.8e-298 1028.9 1962 36.7
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 1.8e-297 1026.9 1305 46.4
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 3.1e-289 999.6 1055 53.8
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 5.9e-288 995.3 868 63.9
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 1.2e-277 961.1 948 57.7
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 1.2e-261 907.9 1403 39.2
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 1.2e-259 901.4 978 52.1
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 3.8e-258 896.3 1792 34.8
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 2.1e-256 890.6 1902 34.9
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 2.7e-256 890.2 957 54.1
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.5e-246 857.8 861 55.7
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 8.5e-194 682.6 1481 31.9
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 4.2e-185 653.7 806 48.6
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 9.5e-161 572.8 851 42.9
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 1.2e-142 512.7 443 64.8
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 1.4e-127 462.6 2309 25.1
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 8.1e-120 436.8 491 50.3
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.0e-114 419.9 360 65.8
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 5.5e-100 370.9 360 59.4
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 6.7e-98 364.0 405 54.8
QL04p053202 Quercus lobata HOM05D004910 ORTHO05D006864 7.4e-97 360.5 333 60.1
Psat4g215960 Pisum sativum HOM05D004910 ORTHO05D006864 1.5e-76 293.1 332 51.8
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 7.5e-73 280.8 351 50.4
AUR62014510 Chenopodium quinoa HOM05D004910 ORTHO05D006864 2.3e-61 242.7 223 58.3
AUR62038025 Chenopodium quinoa HOM05D004910 ORTHO05D006864 4.0e-58 231.9 222 57.2
arahy.Tifrunner.gnm1.ann1.2JI1W5 Arachis hypogaea HOM05D004910 ORTHO05D006864 5.8e-49 201.4 202 53.0
CSS0011325 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 3.2e-47 195.7 132 72.7
Cpa.g.sc73.59 Carica papaya HOM05D004910 ORTHO05D006864 1.1e-36 160.6 164 54.9
AagrBONN_evm.TU.Sc2ySwM_117.2552 Anthoceros agrestis HOM05D004910 ORTHO05D006864 2.8e-35 156.0 210 44.8
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 1.2e-33 150.6 139 63.3
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 8.3e-32 144.4 214 50.0
Prupe.2G100700 Prunus persica HOM05D004910 ORTHO05D006864 7.3e-28 131.3 152 52.0
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 1.4e-26 127.1 112 62.5
Psat6g100000 Pisum sativum HOM05D004910 ORTHO05D030483 4.0e-26 125.6 209 39.2
Actinidia21202 Actinidia chinensis HOM05D004910 ORTHO05D030909 2.3e-21 109.8 345 33.3
CSS0010022 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 8.7e-21 107.8 77 74.0
CSS0036242 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 8.7e-21 107.8 77 74.0
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 6.2e-19 101.7 101 55.4
Os10g0581000 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 6.9e-18 98.2 155 48.4
vmacro13595 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 1.5e-17 97.1 84 81.0
Psat0s999g0120 Pisum sativum HOM05D004910 ORTHO05D030483 7.6e-17 94.7 135 40.7
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 9.9e-17 94.4 108 51.9
Os04g0218701 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 2.9e-16 92.8 154 40.9
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 3.8e-16 92.4 65 69.2
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 1.4e-15 90.5 66 75.8
Gohir.A11G225602 Gossypium hirsutum HOM05D004910 ORTHO05D006864 5.4e-15 88.6 72 63.9
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 6.2e-11 75.1 51 68.6
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 6.2e-11 75.1 51 68.6
Haze_15793 Corylus avellana HOM05D004910 ORTHO05D006864 6.4e-08 65.1 36 88.9
Gohir.D06G038650 Gossypium hirsutum HOM05D004910 ORTHO05D030909 8.4e-08 64.7 49 65.3
Cpa.g.sc73.62 Carica papaya HOM05D004910 ORTHO05D006864 2.7e-06 59.7 36 75.0
FAN03G1104 Fragaria x ananassa HOM05D004910 ORTHO05D019205 6.0e-06 58.5 54 53.7


User provided reference genes

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