Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A615G51 Lonicera japonica HOM05D005192 ORTHO05D006023 1.0e-47 193.0 92 100.0
Lj9C612T3 Lonicera japonica HOM05D005192 ORTHO05D006023 1.4e-41 172.6 91 92.3
Cc02_g26360 Coffea canephora HOM05D005192 ORTHO05D006023 4.2e-33 144.4 89 78.7
Nitab4.5_0000050g0110 Nicotiana tabacum HOM05D005192 ORTHO05D006023 5.5e-33 144.1 89 79.8
Dinv43977 Davidia involucrata HOM05D005192 ORTHO05D006023 7.2e-33 143.7 89 76.4
Cpa.g.sc73.77 Carica papaya HOM05D005192 ORTHO05D006023 1.4e-31 139.4 89 71.9
Nitab4.5_0004800g0050 Nicotiana tabacum HOM05D005192 ORTHO05D006023 1.8e-31 139.0 89 77.5
Sc26g0002010 Simmondsia chinensis HOM05D005192 ORTHO05D006023 1.8e-31 139.0 89 74.2
Nitab4.5_0005106g0020 Nicotiana tabacum HOM05D005192 ORTHO05D006023 3.0e-31 138.3 90 77.8
THA.LOC104805728 Tarenaya hassleriana HOM05D005192 ORTHO05D006023 6.7e-31 137.1 89 69.7
PGSC0003DMG400001805 Solanum tuberosum HOM05D005192 ORTHO05D006023 8.8e-31 136.7 89 74.2
Duzib128G1721 Durio zibethinus HOM05D005192 ORTHO05D006023 2.0e-30 135.6 89 70.8
Oeu060687.1 Olea europaea HOM05D005192 ORTHO05D006023 2.0e-30 135.6 91 68.1
arahy.Tifrunner.gnm1.ann1.8Z97YG Arachis hypogaea HOM05D005192 ORTHO05D006023 2.6e-30 135.2 89 71.9
arahy.Tifrunner.gnm1.ann1.SX2T07 Arachis hypogaea HOM05D005192 ORTHO05D006023 2.6e-30 135.2 89 71.9
Ciclev10032932m.g Citrus clementina HOM05D005192 ORTHO05D006023 2.6e-30 135.2 89 70.8
CAN.G700.32 Capsicum annuum HOM05D005192 ORTHO05D006023 3.3e-30 134.8 89 70.8
Prupe.2G101300 Prunus persica HOM05D005192 ORTHO05D006023 3.3e-30 134.8 89 73.0
SGA_v2.0_scaffold98G29401 Striga asiatica HOM05D005192 ORTHO05D006023 3.3e-30 134.8 89 69.7
Atru.chr2.1677 Acer truncatum HOM05D005192 ORTHO05D006023 4.4e-30 134.4 89 71.9
Gohir.A13G082000 Gossypium hirsutum HOM05D005192 ORTHO05D006023 4.4e-30 134.4 89 69.7
Gohir.D13G100100 Gossypium hirsutum HOM05D005192 ORTHO05D006023 4.4e-30 134.4 89 69.7
Gorai.013G112500 Gossypium raimondii HOM05D005192 ORTHO05D006023 4.4e-30 134.4 89 69.7
Hund26918 Selenicereus undatus HOM05D005192 ORTHO05D006023 4.4e-30 134.4 89 71.9
AT1G64850 Arabidopsis thaliana HOM05D005192 ORTHO05D006023 5.7e-30 134.0 89 70.8
TWI32G1299 Tripterygium wilfordii HOM05D005192 ORTHO05D006023 5.7e-30 134.0 89 70.8
Hma1.2p1_0353F.1_g133370 Hydrangea macrophylla HOM05D005192 ORTHO05D006023 7.5e-30 133.7 89 70.8
Solyc01g081190.4 Solanum lycopersicum HOM05D005192 ORTHO05D006023 7.5e-30 133.7 89 71.9
Aa31LG2G2090 Aethionema arabicum HOM05D005192 ORTHO05D006023 9.7e-30 133.3 89 66.3
Carub.0012s0005 Capsella rubella HOM05D005192 ORTHO05D006023 9.7e-30 133.3 89 69.7
Sp5g18870 Schrenkiella parvula HOM05D005192 ORTHO05D006023 9.7e-30 133.3 89 71.9
ECA234G1488 Erigeron canadensis HOM05D005192 ORTHO05D006023 1.3e-29 132.9 89 69.7
BcaC03g15075 Brassica carinata HOM05D005192 ORTHO05D006023 1.7e-29 132.5 89 70.8
BcaC03g15076 Brassica carinata HOM05D005192 ORTHO05D006023 1.7e-29 132.5 89 70.8
A02p15850 Brassica napus HOM05D005192 ORTHO05D006023 1.7e-29 132.5 89 70.8
C02p26310 Brassica napus HOM05D005192 ORTHO05D006023 1.7e-29 132.5 89 70.8
BolC2t08702H Brassica oleracea HOM05D005192 ORTHO05D006023 1.7e-29 132.5 89 70.8
CiPaw.02G036100 Carya illinoinensis HOM05D005192 ORTHO05D006023 1.7e-29 132.5 90 70.0
Peaxi162Scf00592g00452 Petunia axillaris HOM05D005192 ORTHO05D006023 1.7e-29 132.5 89 74.2
PGR042G1459 Punica granatum HOM05D005192 ORTHO05D006023 1.7e-29 132.5 89 68.5
GSVIVG01011324001 Vitis vinifera HOM05D005192 ORTHO05D006023 1.7e-29 132.5 89 70.8
BcaB05g24444 Brassica carinata HOM05D005192 ORTHO05D006023 2.2e-29 132.1 89 70.8
Duzib177G0632 Durio zibethinus HOM05D005192 ORTHO05D006023 2.8e-29 131.7 89 67.4
HanXRQChr11g0330951 Helianthus annuus HOM05D005192 ORTHO05D006023 2.8e-29 131.7 89 68.5
AL2G19260 Arabidopsis lyrata HOM05D005192 ORTHO05D006023 4.8e-29 131.0 89 68.5
COL.COLO4_08549 Corchorus olitorius HOM05D005192 ORTHO05D006023 4.8e-29 131.0 89 66.3
Dinv43532 Davidia involucrata HOM05D005192 ORTHO05D006023 4.8e-29 131.0 89 68.5
Thecc.05G232400 Theobroma cacao HOM05D005192 ORTHO05D006023 4.8e-29 131.0 89 67.4
vmacro13581 Vaccinium macrocarpon HOM05D005192 ORTHO05D006023 4.8e-29 131.0 89 69.7
Peaxi162Scf00245g00322 Petunia axillaris HOM05D005192 ORTHO05D006023 6.3e-29 130.6 89 71.9
RcHm_v2.0_Chr1g0340081 Rosa chinensis HOM05D005192 ORTHO05D006023 6.3e-29 130.6 89 70.8
CiPaw.01G069000 Carya illinoinensis HOM05D005192 ORTHO05D006023 8.2e-29 130.2 90 66.7
Rhsim07G0045800 Rhododendron simsii HOM05D005192 ORTHO05D006023 8.2e-29 130.2 89 69.7
CARHR056260 Cardamine hirsuta HOM05D005192 ORTHO05D006023 1.1e-28 129.8 89 66.3
Eucgr.E01765 Eucalyptus grandis HOM05D005192 ORTHO05D006023 1.1e-28 129.8 89 66.3
vmacro13584 Vaccinium macrocarpon HOM05D005192 ORTHO05D006023 1.1e-28 129.8 89 68.5
Actinidia05822 Actinidia chinensis HOM05D005192 ORTHO05D006023 1.4e-28 129.4 89 68.5
Aqoxy3G01990 Aquilegia oxysepala HOM05D005192 ORTHO05D006023 2.4e-28 128.6 89 67.4
Nitab4.5_0004594g0120 Nicotiana tabacum HOM05D005192 ORTHO05D006023 2.4e-28 128.6 84 77.4
Lsat_1_v5_gn_4_42301 Lactuca sativa HOM05D005192 ORTHO05D006023 3.1e-28 128.3 89 65.2
FAN01G2901 Fragaria x ananassa HOM05D005192 ORTHO05D006023 4.1e-28 127.9 89 68.5
FAN03G1308 Fragaria x ananassa HOM05D005192 ORTHO05D006023 5.3e-28 127.5 89 68.5
Solyc10g061870.1 Solanum lycopersicum HOM05D005192 ORTHO05D006023 5.3e-28 127.5 89 69.7
CiPaw.01G068900 Carya illinoinensis HOM05D005192 ORTHO05D006023 9.1e-28 126.7 90 65.6
Nn3g21169 Nelumbo nucifera HOM05D005192 ORTHO05D006023 9.1e-28 126.7 89 65.2
Haze_15802 Corylus avellana HOM05D005192 ORTHO05D006023 1.2e-27 126.3 89 66.3
FvH4_7g07320 Fragaria vesca HOM05D005192 ORTHO05D006023 1.6e-27 125.9 89 67.4
FAN10G1987 Fragaria x ananassa HOM05D005192 ORTHO05D006023 1.6e-27 125.9 89 67.4
Potri.013G072600 Populus trichocarpa HOM05D005192 ORTHO05D006023 1.6e-27 125.9 89 67.4
Migut.B01443 Erythranthe guttata HOM05D005192 ORTHO05D006023 2.7e-27 125.2 89 65.2
Manes.09G132000 Manihot esculenta HOM05D005192 ORTHO05D006023 2.7e-27 125.2 88 68.2
MSTRG.17088 Avicennia marina HOM05D005192 ORTHO05D006023 3.5e-27 124.8 89 65.2
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 5.9e-27 124.0 89 67.4
Glyma.03G098300 Glycine max HOM05D005192 ORTHO05D006023 7.7e-27 123.6 89 64.0
Phvul.010G038600 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 7.7e-27 123.6 89 62.9
DCAR_015753 Daucus carota HOM05D005192 ORTHO05D006023 1.0e-26 123.2 89 66.3
FAN06G2558 Fragaria x ananassa HOM05D005192 ORTHO05D006023 1.0e-26 123.2 89 65.2
Sopen01g032770 Solanum pennellii HOM05D005192 ORTHO05D006023 1.0e-26 123.2 84 71.4
unitig_0.g1357 Utricularia gibba HOM05D005192 ORTHO05D006023 1.0e-26 123.2 89 65.2
Lj3g0015892 Lotus japonicus HOM05D005192 ORTHO05D006023 3.8e-26 121.3 89 62.9
AUR62014514 Chenopodium quinoa HOM05D000462 ORTHO05D006023 5.0e-26 120.9 89 61.8
Gohir.D11G235900 Gossypium hirsutum HOM05D005192 ORTHO05D006023 5.0e-26 120.9 89 62.9
Gorai.007G248800 Gossypium raimondii HOM05D005192 ORTHO05D006023 5.0e-26 120.9 89 62.9
Psat4g215840 Pisum sativum HOM05D005192 ORTHO05D006023 5.0e-26 120.9 89 61.8
Ca_25887_v3 Cicer arietinum L. HOM05D000403 ORTHO05D000350 8.5e-26 120.2 89 61.8
Lalb_Chr07g0194821 Lupinus albus HOM05D005192 ORTHO05D006023 8.5e-26 120.2 89 60.7
PSO063G5995 Papaver somniferum HOM05D005192 ORTHO05D006023 8.5e-26 120.2 89 61.8
TPR.G17364 Trifolium pratense HOM05D005192 ORTHO05D006023 1.5e-25 119.4 89 62.9
ATR0829G090 Amborella trichopoda HOM05D005192 ORTHO05D006023 1.9e-25 119.0 89 62.9
PSO782G4714 Papaver somniferum HOM05D005192 ORTHO05D006023 2.5e-25 118.6 89 60.7
VMungo0331G1938 Vigna mungo HOM05D005192 ORTHO05D006023 3.2e-25 118.2 89 60.7
Medtr8g009870 Medicago truncatula HOM05D005192 ORTHO05D006023 5.5e-25 117.5 89 59.6
HPP92_014406 Vanilla planifolia HOM05D005192 ORTHO05D006023 7.2e-25 117.1 89 61.8
Ah.05g177160 Amaranthus hybridus HOM05D005192 ORTHO05D006023 9.4e-25 116.7 88 60.2
Lalb_Chr12g0210171 Lupinus albus HOM05D005192 ORTHO05D006023 9.4e-25 116.7 89 58.4
TAR629G1606 Trochodendron aralioides HOM05D005192 ORTHO05D006023 9.4e-25 116.7 89 62.9
Gohir.A11G222400 Gossypium hirsutum HOM05D005192 ORTHO05D006023 1.6e-24 115.9 87 63.2
Sabra13G0062500 Salix brachista HOM05D005192 ORTHO05D006023 2.7e-24 115.2 89 64.0
SalBow5G0434 Salvia bowleyana HOM05D003398 ORTHO05D003867 3.6e-24 114.8 89 61.8
DCAR_029189 Daucus carota HOM05D005192 ORTHO05D006023 1.0e-23 113.2 89 58.4
CANSAT01G0826 Cannabis sativa HOM05D005192 ORTHO05D006023 1.8e-23 112.5 89 60.7
Os04g0601400 Oryza sativa ssp. japonica HOM05D005192 ORTHO05D006023 1.2e-22 109.8 92 59.8
AUR62038020 Chenopodium quinoa HOM05D005192 ORTHO05D006023 2.0e-22 109.0 121 45.5
arahy.Tifrunner.gnm1.ann1.9NJ9Q0 Arachis hypogaea HOM05D005192 ORTHO05D006023 2.6e-22 108.6 88 59.1
unitig_61.g26432 Utricularia gibba HOM05D005192 ORTHO05D006023 2.6e-22 108.6 87 58.6
TAR629G2600 Trochodendron aralioides HOM05D005192 ORTHO05D006023 5.7e-22 107.5 89 58.4
MD02G1236300 Malus domestica HOM05D005192 ORTHO05D006023 9.8e-22 106.7 89 56.2
Nn3g21165 Nelumbo nucifera HOM05D005192 ORTHO05D006023 1.3e-21 106.3 87 60.9
Zm00001eb071820 Zea mays HOM05D005192 ORTHO05D006023 2.8e-21 105.1 92 58.7
ClCG05G002570 Citrullus lanatus HOM05D005192 ORTHO05D006023 1.1e-20 103.2 89 53.9
CDE04G3605 Ceratophyllum demersum HOM05D005192 ORTHO05D006023 1.4e-20 102.8 89 50.6
Glyma.03G098400 Glycine max HOM05D005192 ORTHO05D006023 2.0e-19 99.0 89 52.8
Phvul.010G038700 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 3.5e-19 98.2 89 50.6
Sed0020247 Sechium edule HOM05D005192 ORTHO05D006023 1.7e-18 95.9 89 50.6
Oeu041522.2 Olea europaea HOM05D005192 ORTHO05D006023 2.2e-18 95.5 64 73.4
Peaxi162Scf00250g00049 Petunia axillaris HOM05D005192 ORTHO05D006023 5.0e-18 94.4 67 70.1
QL04p052587 Quercus lobata HOM05D005192 ORTHO05D006023 6.5e-18 94.0 53 75.5
Sed0012289 Sechium edule HOM05D005192 ORTHO05D006023 1.1e-17 93.2 89 48.3
Thhalv10010860m.g Eutrema salsugineum HOM05D005192 ORTHO05D006023 7.2e-17 90.5 53 73.6
Mapoly0125s0044 Marchantia polymorpha HOM05D005192 ORTHO05D006023 2.1e-16 89.0 84 51.2
CsaV3_3G010010 Cucumis sativus L. HOM05D005192 ORTHO05D006023 2.8e-16 88.6 89 48.3
Glyma.07G123500 Glycine max HOM05D005192 ORTHO05D006023 6.1e-16 87.4 64 64.1
SMO137G0328 Selaginella moellendorffii HOM05D005192 ORTHO05D006023 2.3e-15 85.5 88 47.7
AagrBONN_evm.TU.Sc2ySwM_117.2458 Anthoceros agrestis HOM05D005192 ORTHO05D006023 8.8e-15 83.6 84 46.4
ClCG05G002560 Citrullus lanatus HOM05D005192 ORTHO05D006023 8.8e-15 83.6 93 45.2
Lj7A558T36 Lonicera japonica HOM05D005192 ORTHO05D006023 2.8e-13 78.6 49 75.5
Pp3c12_14230 Physcomitrium patens HOM05D005192 ORTHO05D006023 2.8e-13 78.6 83 50.6
Pp3c3_35520 Physcomitrium patens HOM05D005192 ORTHO05D006023 2.4e-12 75.5 83 49.4
MELO3C006222.2 Cucumis melo HOM05D005192 ORTHO05D006023 9.2e-12 73.6 97 40.2
CsaV3_3G010000 Cucumis sativus L. HOM05D005192 ORTHO05D006023 7.8e-11 70.5 91 39.6
MELO3C006223.2 Cucumis melo HOM05D005192 ORTHO05D006023 1.0e-10 70.1 53 58.5
ATR0829G133 Amborella trichopoda HOM05D005192 ORTHO05D006023 1.1e-09 66.6 86 38.4
MD07G1078400 Malus domestica HOM05D005192 ORTHO05D006023 1.5e-09 66.2 39 74.4
SEGI_22185 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.9e-09 65.9 97 32.0
SEGI_22584 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.9e-09 65.9 97 32.0
SEGI_29719 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 1.9e-09 65.9 97 32.0
MBI04_g12223_MAGBIO Magnolia biondii HOM05D013086 ORTHO05D006023 8.9e-07 57.0 55 49.1


User provided reference genes

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