Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A610T61 Lonicera japonica HOM05D007122 ORTHO05D008918 1.5e-124 449.5 229 100.0
TAR629G1569 Trochodendron aralioides HOM05D007122 ORTHO05D008918 1.8e-93 346.3 226 79.6
Cc02_g30330 Coffea canephora HOM05D007122 ORTHO05D008918 5.3e-93 344.7 228 77.6
Potri.002G183700 Populus trichocarpa HOM05D007122 ORTHO05D008918 1.2e-92 343.6 225 78.7
CANSAT01G1971 Cannabis sativa HOM05D007122 ORTHO05D008918 2.6e-92 342.4 231 77.1
CiPaw.01G090900 Carya illinoinensis HOM05D007122 ORTHO05D008918 7.7e-92 340.9 221 79.2
Atru.chr5.816 Acer truncatum HOM05D007122 ORTHO05D008918 1.3e-91 340.1 226 77.9
Gohir.D11G107500 Gossypium hirsutum HOM05D007122 ORTHO05D008918 1.3e-91 340.1 226 77.4
MD17G1162500 Malus domestica HOM05D007122 ORTHO05D008918 2.2e-91 339.3 225 77.8
Thecc.01G329100 Theobroma cacao HOM05D007122 ORTHO05D008918 5.0e-91 338.2 226 77.9
EL10Ac5g10570 Beta vulgaris HOM05D007122 ORTHO05D008918 6.5e-91 337.8 226 77.4
COL.COLO4_23084 Corchorus olitorius HOM05D007122 ORTHO05D008918 6.5e-91 337.8 226 78.3
Thhalv10001577m.g Eutrema salsugineum HOM05D007122 ORTHO05D008918 6.5e-91 337.8 228 74.6
Prupe.3G022800 Prunus persica HOM05D007122 ORTHO05D008918 2.5e-90 335.9 225 76.9
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 2.5e-90 335.9 226 77.4
Carub.0004s2963 Capsella rubella HOM05D007122 ORTHO05D008918 3.2e-90 335.5 228 74.1
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 3.2e-90 335.5 226 76.5
Gorai.007G115100 Gossypium raimondii HOM05D007122 ORTHO05D008918 4.2e-90 335.1 231 76.2
QL05p084392 Quercus lobata HOM05D007122 ORTHO05D008918 4.2e-90 335.1 221 77.8
Lj3g0016159 Lotus japonicus HOM05D007122 ORTHO05D008918 9.4e-90 334.0 223 76.2
CARHR142260 Cardamine hirsuta HOM05D007122 ORTHO05D008918 1.2e-89 333.6 228 73.7
Sp4g28930 Schrenkiella parvula HOM05D007122 ORTHO05D008918 1.6e-89 333.2 228 74.6
AT2G46910 Arabidopsis thaliana HOM05D007122 ORTHO05D008918 2.1e-89 332.8 228 73.2
RcHm_v2.0_Chr2g0149531 Rosa chinensis HOM05D007122 ORTHO05D008918 2.1e-89 332.8 226 74.8
FAN05G3936 Fragaria x ananassa HOM05D007122 ORTHO05D008918 2.7e-89 332.4 226 74.8
Nn1g00501 Nelumbo nucifera HOM05D007122 ORTHO05D008918 2.7e-89 332.4 227 77.5
Sopen08g022350 Solanum pennellii HOM05D007122 ORTHO05D008918 2.7e-89 332.4 228 75.0
Peaxi162Scf00822g00313 Petunia axillaris HOM05D007122 ORTHO05D008918 3.6e-89 332.0 228 75.9
AUR62028625 Chenopodium quinoa HOM05D007122 ORTHO05D008918 4.6e-89 331.6 225 76.9
Hma1.2p1_0074F.1_g038925 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 4.6e-89 331.6 223 75.8
Phvul.010G164100 Phaseolus vulgaris HOM05D007122 ORTHO05D008918 4.6e-89 331.6 223 75.8
AUR62008050 Chenopodium quinoa HOM05D007122 ORTHO05D008918 6.1e-89 331.3 225 76.4
Ca_20970_v3 Cicer arietinum L. HOM05D007122 ORTHO05D008918 6.1e-89 331.3 223 75.3
MBI12_g33188_MAGBIO Magnolia biondii HOM05D007122 ORTHO05D008918 7.9e-89 330.9 224 78.6
Solyc08g068590.4 Solanum lycopersicum HOM05D007122 ORTHO05D008918 7.9e-89 330.9 228 74.6
Cpa.g.sc57.60 Carica papaya HOM05D007122 ORTHO05D008918 1.0e-88 330.5 226 77.0
FAN14G1589 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.8e-88 329.7 226 73.9
Medtr4g005390 Medicago truncatula HOM05D007122 ORTHO05D008918 1.8e-88 329.7 223 74.9
CAN.G21.48 Capsicum annuum HOM05D007122 ORTHO05D008918 2.3e-88 329.3 228 74.6
A05p00930 Brassica napus HOM05D007122 ORTHO05D008918 3.0e-88 328.9 228 72.4
Nitab4.5_0006202g0020 Nicotiana tabacum HOM05D007122 ORTHO05D008918 3.0e-88 328.9 222 75.7
FvH4_6g36990 Fragaria vesca HOM05D007122 ORTHO05D008918 3.9e-88 328.6 226 73.9
THA.LOC104802109 Tarenaya hassleriana HOM05D007122 ORTHO05D008918 3.9e-88 328.6 227 75.8
BcaC02g12634 Brassica carinata HOM05D007122 ORTHO05D008918 5.1e-88 328.2 228 72.4
HanXRQChr16g0524441 Helianthus annuus HOM05D007122 ORTHO05D008918 1.1e-87 327.0 235 72.8
MELO3C026712.2 Cucumis melo HOM05D007122 ORTHO05D008918 2.0e-87 326.2 221 76.0
CsaV3_3G030490 Cucumis sativus L. HOM05D007122 ORTHO05D008918 2.0e-87 326.2 221 76.0
ClCG07G014660 Citrullus lanatus HOM05D007122 ORTHO05D008918 2.5e-87 325.9 221 75.6
Glyma.07G002100 Glycine max HOM05D007122 ORTHO05D008918 3.3e-87 325.5 224 75.9
MSTRG.12208 Avicennia marina HOM05D007122 ORTHO05D008918 4.3e-87 325.1 229 75.1
PSO782G5442 Papaver somniferum HOM05D007122 ORTHO05D008918 4.3e-87 325.1 227 75.8
Oeu050289.1 Olea europaea HOM05D007122 ORTHO05D008918 1.3e-86 323.6 229 74.2
BraA05t19094Z Brassica rapa HOM05D007122 ORTHO05D008918 1.7e-86 323.2 229 71.6
Actinidia33027 Actinidia chinensis HOM05D007122 ORTHO05D008918 2.8e-86 322.4 238 72.3
arahy.Tifrunner.gnm1.ann1.XK7RJX Arachis hypogaea HOM05D007122 ORTHO05D008918 2.8e-86 322.4 221 74.7
Aa31LG1G28270 Aethionema arabicum HOM05D007122 ORTHO05D008918 6.3e-86 321.2 226 73.0
Ciclev10021604m.g Citrus clementina HOM05D007122 ORTHO05D008918 6.3e-86 321.2 226 75.2
TPR.G38811 Trifolium pratense HOM05D007122 ORTHO05D008918 6.3e-86 321.2 224 72.8
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 8.2e-86 320.9 229 71.6
Lalb_Chr04g0264851 Lupinus albus HOM05D007122 ORTHO05D008918 1.1e-85 320.5 221 74.2
Eucgr.E00013 Eucalyptus grandis HOM05D007122 ORTHO05D008918 1.4e-85 320.1 225 75.6
arahy.Tifrunner.gnm1.ann1.KLKB5C Arachis hypogaea HOM05D007122 ORTHO05D008918 5.3e-85 318.2 221 73.3
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 1.5e-84 316.6 213 77.0
Hund02816 Selenicereus undatus HOM05D007122 ORTHO05D008918 2.2e-83 312.8 224 72.3
HPP92_007409 Vanilla planifolia HOM05D007122 ORTHO05D008918 8.5e-83 310.8 223 74.9
PGSC0003DMG400029047 Solanum tuberosum HOM05D007122 ORTHO05D008918 2.5e-82 309.3 258 64.3
Os10g0509200 Oryza sativa ssp. japonica HOM05D007122 ORTHO05D008918 1.0e-80 303.9 227 71.4
ATR0579G047 Amborella trichopoda HOM05D007122 ORTHO05D008918 3.0e-80 302.4 219 70.3
vmacro08515 Vaccinium macrocarpon HOM05D007122 ORTHO05D008918 1.5e-79 300.1 236 69.1
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 2.6e-79 299.3 221 68.3
CDE02G4652 Ceratophyllum demersum HOM05D007122 ORTHO05D008918 2.2e-78 296.2 227 71.8
Sabra02G0131900 Salix brachista HOM05D007122 ORTHO05D008918 4.8e-78 295.0 314 55.7
Zm00001eb220590 Zea mays HOM05D007122 ORTHO05D008918 3.1e-77 292.4 225 69.3
Rhsim04G0175900 Rhododendron simsii HOM05D007122 ORTHO05D008918 9.1e-77 290.8 245 64.1
Dinv25395 Davidia involucrata HOM05D007122 ORTHO05D008918 1.5e-76 290.0 225 70.2
Sed0017612 Sechium edule HOM05D007122 ORTHO05D008918 1.4e-74 283.5 190 76.8
Manes.01G237100 Manihot esculenta HOM05D007122 ORTHO05D008918 4.2e-74 282.0 191 75.9
VMungo0331G0463 Vigna mungo HOM05D000070 ORTHO05D003491 1.8e-72 276.6 183 75.4
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 5.7e-71 271.6 193 72.5
PGR042G2951 Punica granatum HOM05D007122 ORTHO05D008918 5.7e-71 271.6 185 71.4
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 1.4e-69 266.9 181 71.8
Gohir.A11G103000 Gossypium hirsutum HOM05D007122 ORTHO05D008918 4.1e-69 265.4 182 77.5
Ah.11g050690 Amaranthus hybridus HOM05D007122 ORTHO05D008918 1.4e-64 250.4 225 61.3
Aqoxy5G04392 Aquilegia oxysepala HOM05D007122 ORTHO05D008918 1.4e-64 250.4 216 63.9
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 6.8e-64 248.1 171 71.9
SGA_v2.0_scaffold104G30244 Striga asiatica HOM05D007122 ORTHO05D008918 2.6e-63 246.1 231 59.3
SMO232G0083 Selaginella moellendorffii HOM05D007122 ORTHO05D008918 5.7e-63 245.0 230 57.0
Mapoly0069s0014 Marchantia polymorpha HOM05D007122 ORTHO05D008918 6.3e-62 241.5 235 55.7
Duzib133G0914 Durio zibethinus HOM05D007122 ORTHO05D008918 2.7e-57 226.1 185 64.3
Dinv32665 Davidia involucrata HOM05D007122 ORTHO05D008918 1.4e-56 223.8 139 80.6
Glyma.08G224600 Glycine max HOM05D007122 ORTHO05D008918 1.3e-54 217.2 152 73.7
Pp3c11_15290 Physcomitrium patens HOM05D007122 ORTHO05D008918 1.6e-52 210.3 237 49.4
PSO063G7482 Papaver somniferum HOM05D007122 ORTHO05D008918 2.7e-52 209.5 144 76.4
Sc05g0001590 Simmondsia chinensis HOM05D007122 ORTHO05D008918 4.5e-52 208.8 141 73.8
Migut.N02127 Erythranthe guttata HOM05D007122 ORTHO05D008918 6.1e-49 198.4 145 70.3
Haze_16258 Corylus avellana HOM05D007122 ORTHO05D008918 8.0e-49 198.0 329 42.9
FAN02G0509 Fragaria x ananassa HOM05D007122 ORTHO05D008918 4.0e-48 195.7 199 56.8
Glyma.14G134000 Glycine max HOM05D007122 ORTHO05D008918 3.4e-47 192.6 153 66.0
QL05p083819 Quercus lobata HOM05D007122 ORTHO05D008918 3.1e-32 142.9 171 48.5
Pp3c2_10460 Physcomitrium patens HOM05D007122 ORTHO05D008918 2.0e-31 140.2 151 45.7
Zm00001eb094490 Zea mays HOM05D007122 ORTHO05D008918 4.1e-29 132.5 94 72.3
Cre01.g039550 Chlamydomonas reinhardtii HOM05D007122 ORTHO05D008918 2.7e-28 129.8 239 35.6
MCO07G119 Micromonas commoda HOM05D007122 ORTHO05D008918 8.1e-25 118.2 250 37.2
Psat7g265400 Pisum sativum HOM05D007122 ORTHO05D008918 7.6e-23 111.7 87 69.0
Hma1.2p1_0074F.1_g038930 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 5.1e-19 99.0 61 83.6
SGA_v2.0_scaffold159G37569 Striga asiatica HOM05D007122 ORTHO05D008918 6.6e-11 72.0 116 43.1
MSTRG.14623 Avicennia marina HOM05D002234 ORTHO05D002254 7.3e-10 68.6 235 25.5
CANSAT56G3737 Cannabis sativa HOM05D002234 ORTHO05D002254 2.1e-09 67.0 243 25.9
THA.LOC104812983 Tarenaya hassleriana HOM05D002234 ORTHO05D002254 2.8e-09 66.6 235 27.7
FAN05G3242 Fragaria x ananassa HOM05D007122 ORTHO05D008918 3.6e-09 66.2 52 67.3
PRCOL_00001829 Prasinoderma coloniale HOM05D002234 ORTHO05D002254 3.6e-09 66.2 241 26.6
SMO367G0795 Selaginella moellendorffii HOM05D002234 ORTHO05D002254 4.8e-09 65.9 236 25.8
FAN14G0283 Fragaria x ananassa HOM05D007122 ORTHO05D008918 8.1e-09 65.1 38 86.8
EL10Ac8g20136 Beta vulgaris HOM05D002234 ORTHO05D002254 1.4e-08 64.3 244 27.9
FvH4_6g35960 Fragaria vesca HOM05D007122 ORTHO05D008918 1.4e-08 64.3 52 65.4
Phvul.006G145100 Phaseolus vulgaris HOM05D002234 ORTHO05D002254 3.1e-08 63.2 236 25.4
COL.COLO4_31843 Corchorus olitorius HOM05D002234 ORTHO05D002254 5.3e-08 62.4 237 27.0
PRCOL_00002778 Prasinoderma coloniale HOM05D007122 ORTHO05D008918 6.9e-08 62.0 198 33.3
PSO210G7268 Papaver somniferum HOM05D002234 ORTHO05D002254 4.4e-07 59.3 229 26.2
BraA07t28698Z Brassica rapa HOM05D006432 ORTHO05D008257 7.6e-07 58.5 226 29.2
CANSAT56G3028 Cannabis sativa HOM05D002234 ORTHO05D002254 1.3e-06 57.8 226 25.7
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 1.7e-06 57.4 135 28.1
C04p72510 Brassica napus HOM05D000051 ORTHO05D000015 2.2e-06 57.0 74 43.2
BolC4t28739H Brassica oleracea HOM05D000051 ORTHO05D000015 2.2e-06 57.0 74 43.2
A07p09040 Brassica napus HOM05D006432 ORTHO05D008257 2.9e-06 56.6 226 28.8
C07p14010 Brassica napus HOM05D006432 ORTHO05D008257 2.9e-06 56.6 226 28.3
BcaC06g35517 Brassica carinata HOM05D006432 ORTHO05D008257 3.8e-06 56.2 226 28.8
BolC7t41898H Brassica oleracea HOM05D006432 ORTHO05D008257 3.8e-06 56.2 226 28.8
Sed0005439 Sechium edule HOM05D006432 ORTHO05D008257 8.4e-06 55.1 152 27.6


User provided reference genes

Program Settings