Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A607T84 Lonicera japonica HOM05D002391 ORTHO05D004870 0.0e+00 1373.2 710 100.0
Actinidia08007 Actinidia chinensis HOM05D002391 ORTHO05D004870 0.0e+00 1161.4 692 86.0
Dinv32645 Davidia involucrata HOM05D002391 ORTHO05D004870 0.0e+00 1157.5 694 86.2
Hma1.2p1_0074F.1_g038740 Hydrangea macrophylla HOM05D002391 ORTHO05D004870 0.0e+00 1141.3 683 85.5
Dinv31611 Davidia involucrata HOM05D002391 ORTHO05D004870 0.0e+00 1139.0 692 84.8
vmacro13188 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 0.0e+00 1138.3 692 84.7
Lsat_1_v5_gn_4_41841 Lactuca sativa HOM05D002391 ORTHO05D004870 0.0e+00 1114.8 691 82.8
TAR629G2316 Trochodendron aralioides HOM05D002391 ORTHO05D004870 0.0e+00 1106.7 687 83.0
Lsat_1_v5_gn_3_17681 Lactuca sativa HOM05D002391 ORTHO05D004870 0.0e+00 1105.1 691 82.2
HanXRQChr16g0520851 Helianthus annuus HOM05D002391 ORTHO05D004870 0.0e+00 1103.2 681 83.4
ClCG06G002280 Citrullus lanatus HOM05D002391 ORTHO05D004870 0.0e+00 1100.5 697 81.2
Nitab4.5_0003682g0020 Nicotiana tabacum HOM05D002391 ORTHO05D004870 0.0e+00 1097.4 695 81.9
Nn2g14439 Nelumbo nucifera HOM05D002391 ORTHO05D004870 0.0e+00 1097.0 687 81.2
Migut.B01922 Erythranthe guttata HOM05D002391 ORTHO05D004870 0.0e+00 1094.3 692 81.6
Manes.01G239800 Manihot esculenta HOM05D002391 ORTHO05D004870 0.0e+00 1094.0 697 81.1
Cfa003734 Carpinus fangiana HOM05D002391 ORTHO05D004870 0.0e+00 1092.0 699 80.0
Sopen07g029360 Solanum pennellii HOM05D002391 ORTHO05D004870 0.0e+00 1092.0 679 82.3
MELO3C022305.2 Cucumis melo HOM05D002391 ORTHO05D004870 0.0e+00 1091.3 697 80.6
Haze_15735 Corylus avellana HOM05D002391 ORTHO05D004870 0.0e+00 1090.1 699 79.8
CsaV3_6G008330 Cucumis sativus L. HOM05D002391 ORTHO05D004870 0.0e+00 1090.1 697 80.5
PGSC0003DMG401031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 0.0e+00 1089.3 679 82.2
Solyc07g056010.3 Solanum lycopersicum HOM05D002391 ORTHO05D004870 0.0e+00 1088.9 679 82.2
CANSAT56G4423 Cannabis sativa HOM05D002391 ORTHO05D004870 0.0e+00 1087.4 698 80.5
CAN.G585.49 Capsicum annuum HOM05D002391 ORTHO05D004870 0.0e+00 1087.0 679 81.9
CANSAT56G4076 Cannabis sativa HOM05D002391 ORTHO05D004870 0.0e+00 1086.2 699 80.4
CAN.G1209.27 Capsicum annuum HOM05D002391 ORTHO05D004870 0.0e+00 1086.2 681 81.8
Peaxi162Scf00028g00124 Petunia axillaris HOM05D002391 ORTHO05D004870 0.0e+00 1083.9 680 82.4
Aqoxy5G01515 Aquilegia oxysepala HOM05D002391 ORTHO05D004870 0.0e+00 1082.4 670 82.7
COL.COLO4_31148 Corchorus olitorius HOM05D002391 ORTHO05D004870 0.0e+00 1081.6 699 79.1
Sed0000252 Sechium edule HOM05D002391 ORTHO05D004870 0.0e+00 1077.8 699 79.7
DCAR_032252 Daucus carota HOM05D002391 ORTHO05D004870 0.0e+00 1077.4 689 81.4
Potri.002G179600 Populus trichocarpa HOM05D002391 ORTHO05D004870 0.0e+00 1077.4 707 79.5
CiPaw.01G082500 Carya illinoinensis HOM05D002391 ORTHO05D004870 0.0e+00 1077.0 691 80.2
MSTRG.17383 Avicennia marina HOM05D002391 ORTHO05D004870 0.0e+00 1075.1 692 79.8
Duzib235G0384 Durio zibethinus HOM05D002391 ORTHO05D004870 0.0e+00 1075.1 696 78.4
Sabra02G0134300 Salix brachista HOM05D002391 ORTHO05D004870 0.0e+00 1075.1 707 79.5
TWI59G0940 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 1.5e-311 1072.4 692 79.5
Atru.chr5.768 Acer truncatum HOM05D002391 ORTHO05D004870 3.4e-311 1071.2 692 79.5
SGA_v2.0_scaffold12G06269 Striga asiatica HOM05D002391 ORTHO05D004870 4.4e-311 1070.8 692 79.0
TWI14G1409 Tripterygium wilfordii HOM05D002391 ORTHO05D004870 8.2e-310 1066.6 694 79.3
A03p31630 Brassica napus HOM05D002391 ORTHO05D004870 1.8e-309 1065.4 701 78.2
BraA03t12339Z Brassica rapa HOM05D002391 ORTHO05D004870 4.1e-309 1064.3 701 78.0
Gorai.005G122300 Gossypium raimondii HOM05D002391 ORTHO05D004870 9.0e-309 1063.1 693 78.6
arahy.Tifrunner.gnm1.ann1.SI3K9E Arachis hypogaea HOM05D002391 ORTHO05D004870 3.4e-308 1061.2 710 76.9
BcaC01g06822 Brassica carinata HOM05D002391 ORTHO05D004870 3.4e-308 1061.2 701 77.7
C03p38630 Brassica napus HOM05D002391 ORTHO05D004870 4.5e-308 1060.8 701 77.7
BolC3t16136H Brassica oleracea HOM05D002391 ORTHO05D004870 4.5e-308 1060.8 701 77.7
arahy.Tifrunner.gnm1.ann1.E8X9SV Arachis hypogaea HOM05D002391 ORTHO05D004870 7.7e-308 1060.1 710 76.9
Ciclev10018998m.g Citrus clementina HOM05D002391 ORTHO05D004870 1.0e-307 1059.7 679 80.0
Gohir.A02G090600 Gossypium hirsutum HOM05D002391 ORTHO05D004870 1.0e-307 1059.7 693 78.5
QL08p047248 Quercus lobata HOM05D002391 ORTHO05D004870 2.2e-307 1058.5 692 78.9
Aa31LG5G1170 Aethionema arabicum HOM05D002391 ORTHO05D004870 2.9e-307 1058.1 673 79.6
Sp6g01350 Schrenkiella parvula HOM05D002391 ORTHO05D004870 2.9e-307 1058.1 701 77.5
SalBow3G2598 Salvia bowleyana HOM05D002391 ORTHO05D004870 5.0e-307 1057.4 717 77.3
SalBow3G4592 Salvia bowleyana HOM05D002391 ORTHO05D004870 5.0e-307 1057.4 717 77.3
Thhalv10028369m.g Eutrema salsugineum HOM05D002391 ORTHO05D004870 1.4e-306 1055.8 687 78.2
THA.LOC104815894 Tarenaya hassleriana HOM05D002391 ORTHO05D004870 2.5e-306 1055.0 683 78.3
FAN03G0415 Fragaria x ananassa HOM05D002391 ORTHO05D004870 4.2e-306 1054.3 674 79.1
Gohir.D06G121400 Gossypium hirsutum HOM05D002391 ORTHO05D004870 1.6e-305 1052.4 688 77.2
Gorai.010G141700 Gossypium raimondii HOM05D002391 ORTHO05D004870 1.6e-305 1052.4 688 77.2
FvH4_7g17670 Fragaria vesca HOM05D002391 ORTHO05D004870 1.0e-304 1049.7 674 78.8
FAN01G3049 Fragaria x ananassa HOM05D002391 ORTHO05D004870 1.4e-304 1049.3 674 78.6
FAN06G0341 Fragaria x ananassa HOM05D002391 ORTHO05D004870 1.4e-304 1049.3 674 78.8
Lalb_Chr18g0044711 Lupinus albus HOM05D002391 ORTHO05D004870 1.4e-304 1049.3 688 77.9
Prupe.2G092100 Prunus persica HOM05D002391 ORTHO05D004870 1.4e-304 1049.3 673 79.0
AL6G52005 Arabidopsis lyrata HOM05D002391 ORTHO05D004870 1.8e-304 1048.9 676 78.7
FAN06G0379 Fragaria x ananassa HOM05D002391 ORTHO05D004870 1.8e-304 1048.9 674 78.8
FAN10G4291 Fragaria x ananassa HOM05D002391 ORTHO05D004870 3.0e-304 1048.1 674 78.8
FAN10G1672 Fragaria x ananassa HOM05D002391 ORTHO05D004870 3.9e-304 1047.7 674 78.8
CARHR250280 Cardamine hirsuta HOM05D002391 ORTHO05D004870 3.3e-303 1044.6 673 78.9
Thecc.06G056400 Theobroma cacao HOM05D002391 ORTHO05D004870 3.3e-303 1044.6 698 77.2
Prupe.2G197800 Prunus persica HOM05D002391 ORTHO05D004870 7.4e-303 1043.5 674 78.0
Carub.0006s3580 Capsella rubella HOM05D002391 ORTHO05D004870 2.8e-302 1041.6 673 78.3
AT4G01395 Arabidopsis thaliana HOM05D002391 ORTHO05D004870 6.3e-302 1040.4 676 78.6
PSO170G3053 Papaver somniferum HOM05D002391 ORTHO05D004870 1.1e-301 1039.6 694 77.4
PSO017G7365 Papaver somniferum HOM05D002391 ORTHO05D004870 1.8e-301 1038.9 694 77.2
PGR031G3302 Punica granatum HOM05D002391 ORTHO05D004870 1.2e-300 1036.2 694 77.4
Lj5g0026855 Lotus japonicus HOM05D002391 ORTHO05D004870 2.6e-300 1035.0 696 76.7
TPR.G4730 Trifolium pratense HOM05D002391 ORTHO05D004870 2.2e-299 1031.9 695 76.4
Glyma.03G261100 Glycine max HOM05D002391 ORTHO05D004870 1.4e-298 1029.2 690 76.2
Hund24710 Selenicereus undatus HOM05D002391 ORTHO05D004870 1.4e-298 1029.2 677 77.8
PSO339G3919 Papaver somniferum HOM05D002391 ORTHO05D004870 3.2e-298 1028.1 694 76.4
Phvul.009G254600 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 1.2e-297 1026.2 677 77.4
Psat0s3525g0040 Pisum sativum HOM05D002391 ORTHO05D004870 2.1e-297 1025.4 697 75.9
Glyma.19G260100 Glycine max HOM05D002391 ORTHO05D004870 4.7e-297 1024.2 697 75.3
Phvul.009G257900 Phaseolus vulgaris HOM05D002391 ORTHO05D004870 4.7e-297 1024.2 695 75.4
VMungo1309G0406 Vigna mungo HOM05D002391 ORTHO05D004870 7.9e-297 1023.5 695 75.4
Eucgr.B02196 Eucalyptus grandis HOM05D002391 ORTHO05D004870 1.4e-296 1022.7 683 77.0
Ca_09546_v3 Cicer arietinum L. HOM05D002391 ORTHO05D004870 3.9e-296 1021.1 675 77.5
Medtr7g118220 Medicago truncatula HOM05D002391 ORTHO05D004870 5.1e-296 1020.8 675 77.5
ECA234G3070 Erigeron canadensis HOM05D002391 ORTHO05D004870 3.3e-295 1018.1 681 76.5
VMungo1309G1994 Vigna mungo HOM05D002391 ORTHO05D004870 1.4e-293 1012.7 695 74.2
Nitab4.5_0003729g0040 Nicotiana tabacum HOM05D002391 ORTHO05D004870 4.5e-292 1007.7 683 77.2
Gohir.D02G107800 Gossypium hirsutum HOM05D002391 ORTHO05D004870 7.7e-292 1006.9 692 75.6
CDE11G0036 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 1.5e-290 1002.7 692 73.1
Ah.08g211620 Amaranthus hybridus HOM05D002391 ORTHO05D004870 2.1e-289 998.8 674 75.4
MD07G1159900 Malus domestica HOM05D002391 ORTHO05D004870 8.0e-289 996.9 674 76.4
unitig_899.g15596 Utricularia gibba HOM05D002391 ORTHO05D004870 4.8e-286 987.6 692 74.1
MBI12_g09288_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 3.1e-285 984.9 688 74.7
HPP92_001559 Vanilla planifolia HOM05D002391 ORTHO05D004870 1.9e-282 975.7 694 70.7
Sc20g0005510 Simmondsia chinensis HOM05D002391 ORTHO05D004870 3.2e-282 974.9 692 72.0
ATR0697G195 Amborella trichopoda HOM05D002391 ORTHO05D004870 1.8e-280 969.1 693 70.9
SEGI_26155 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 8.5e-275 950.3 698 68.8
SEGI_23282 Sequoiadendron giganteum HOM05D002391 ORTHO05D004870 1.4e-272 943.0 693 68.5
Cc06_g20470 Coffea canephora HOM05D002391 ORTHO05D004870 2.3e-272 942.2 676 73.4
GSVIVG01027440001 Vitis vinifera HOM05D002391 ORTHO05D004870 8.8e-272 940.3 690 71.9
Lalb_Chr15g0076531 Lupinus albus HOM05D002391 ORTHO05D004870 6.3e-270 934.1 693 69.3
AUR62042494 Chenopodium quinoa HOM05D002391 ORTHO05D004870 2.5e-266 922.2 608 76.8
ECA234G2472 Erigeron canadensis HOM05D002391 ORTHO05D004870 3.6e-265 918.3 669 70.6
EL10Ac7g16621 Beta vulgaris HOM05D002391 ORTHO05D004870 8.0e-265 917.1 722 67.2
AUR62040015 Chenopodium quinoa HOM05D002391 ORTHO05D004870 5.9e-260 901.0 606 75.4
Oeu007915.2 Olea europaea HOM05D002391 ORTHO05D004870 2.6e-255 885.6 694 69.2
unitig_21.g20038 Utricularia gibba HOM05D002391 ORTHO05D004870 7.3e-242 840.9 662 67.2
Gohir.A06G116700 Gossypium hirsutum HOM05D002391 ORTHO05D004870 4.4e-239 831.6 575 73.6
Manes.05G016350 Manihot esculenta HOM05D002391 ORTHO05D004870 4.8e-225 785.0 673 66.3
MD07G1159800 Malus domestica HOM05D002391 ORTHO05D004870 7.6e-223 777.7 517 77.0
Mapoly0151s0016 Marchantia polymorpha HOM05D002391 ORTHO05D004870 2.9e-222 775.8 673 58.8
SMO364G0412 Selaginella moellendorffii HOM05D002391 ORTHO05D004870 2.4e-221 772.7 672 59.5
Pp3c17_20140 Physcomitrium patens HOM05D002391 ORTHO05D004870 1.3e-217 760.4 682 56.5
BcaB05g23972 Brassica carinata HOM05D002391 ORTHO05D004870 3.3e-210 735.7 680 60.1
Rhsim07G0007000 Rhododendron simsii HOM05D002391 ORTHO05D004870 6.5e-198 694.9 493 74.0
CBR_g6290 Chara braunii HOM05D002391 ORTHO05D004870 5.1e-187 658.7 812 45.1
RcHm_v2.0_Chr1g0334511 Rosa chinensis HOM05D002391 ORTHO05D004870 4.4e-170 602.4 379 81.5
Os02g0456000 Oryza sativa ssp. japonica HOM05D002391 ORTHO05D004870 2.7e-164 583.2 544 57.0
AagrBONN_evm.TU.Sc2ySwM_344.5215 Anthoceros agrestis HOM05D002391 ORTHO05D004870 9.8e-162 574.7 533 56.5
PSO302G0149 Papaver somniferum HOM05D002391 ORTHO05D004870 3.2e-157 559.7 375 76.8
A03p50140 Brassica napus HOM05D002391 ORTHO05D004870 4.2e-157 559.3 393 73.5
TAR636G0053 Trochodendron aralioides HOM05D002391 ORTHO05D004870 1.6e-156 557.4 329 86.6
Zm00001eb402340 Zea mays HOM05D002391 ORTHO05D004870 1.6e-156 557.4 537 56.1
CAN.G732.5 Capsicum annuum HOM05D002391 ORTHO05D004870 4.0e-155 552.7 355 80.0
Zm00001eb005370 Zea mays HOM05D002391 ORTHO05D004870 5.2e-147 525.8 494 56.7
Carub.0003s2971 Capsella rubella HOM05D002391 ORTHO05D004870 6.8e-147 525.4 699 45.6
MD07G1159700 Malus domestica HOM05D002391 ORTHO05D004870 3.6e-132 476.5 275 88.4
TAR636G3264 Trochodendron aralioides HOM05D002391 ORTHO05D004870 4.0e-131 473.0 322 75.2
CDE02G1610 Ceratophyllum demersum HOM05D002391 ORTHO05D004870 1.4e-128 464.5 670 43.3
DCAR_022118 Daucus carota HOM05D002391 ORTHO05D004870 1.4e-120 438.0 323 72.8
Cre06.g287250 Chlamydomonas reinhardtii HOM05D002391 ORTHO05D004870 4.2e-112 409.8 758 33.5
RcHm_v2.0_Chr1g0334501 Rosa chinensis HOM05D002391 ORTHO05D004870 5.4e-112 409.5 273 74.4
PRCOL_00002903 Prasinoderma coloniale HOM05D002391 ORTHO05D004870 1.5e-109 401.4 681 36.1
vmacro23330 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 1.5e-109 401.4 273 78.4
BraA03t14107Z Brassica rapa HOM05D002391 ORTHO05D004870 4.2e-104 383.3 274 73.0
MBI12_g48127_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 1.2e-103 381.7 409 56.0
A05p28430 Brassica napus HOM05D002391 ORTHO05D004870 5.1e-102 376.3 270 73.7
BraA05t21723Z Brassica rapa HOM05D002391 ORTHO05D004870 1.9e-101 374.4 270 73.3
vmacro13197 Vaccinium macrocarpon HOM05D002391 ORTHO05D004870 7.6e-98 362.5 454 51.5
A08p28600 Brassica napus HOM05D002391 ORTHO05D004870 4.0e-91 340.1 235 74.5
BraA02t04916Z Brassica rapa HOM05D002391 ORTHO05D004870 1.3e-89 335.1 232 74.1
BraA02t08770Z Brassica rapa HOM05D002391 ORTHO05D004870 1.3e-89 335.1 232 74.1
A07p33310 Brassica napus HOM05D002391 ORTHO05D004870 4.1e-83 313.5 211 76.8
Cpa.g.sc193.14 Carica papaya HOM05D002391 ORTHO05D004870 8.5e-73 279.3 155 88.4
PGSC0003DMG402031089 Solanum tuberosum HOM05D002391 ORTHO05D004870 6.7e-70 269.6 150 90.0
CAN.G732.6 Capsicum annuum HOM05D002391 ORTHO05D004870 2.4e-59 234.6 135 85.9
HanXRQChr05g0132281 Helianthus annuus HOM05D002391 ORTHO05D004870 2.3e-54 218.0 123 88.6
FvH4_4g00571 Fragaria vesca HOM05D002391 ORTHO05D004870 2.2e-52 211.5 149 69.8
C02p38430 Brassica napus HOM05D002391 ORTHO05D017667 3.1e-51 207.6 149 71.8
FvH4_5g29942 Fragaria vesca HOM05D002391 ORTHO05D017667 3.5e-50 204.1 213 54.0
Actinidia33035 Actinidia chinensis HOM05D002391 ORTHO05D004870 4.5e-50 203.8 120 89.2
BolC2t09861H Brassica oleracea HOM05D002391 ORTHO05D017667 1.8e-43 181.8 129 72.9
BcaC03g16083 Brassica carinata HOM05D002391 ORTHO05D017667 1.5e-37 162.2 118 69.5
ECA246G0062 Erigeron canadensis HOM05D002391 ORTHO05D004870 7.3e-32 143.3 96 77.1
BcaC01g02750 Brassica carinata HOM05D002391 ORTHO05D004870 2.0e-29 135.2 143 58.0
MBI12_g48128_MAGBIO Magnolia biondii HOM05D002391 ORTHO05D004870 2.0e-29 135.2 82 82.9
Dinv08357 Davidia involucrata HOM05D002391 ORTHO05D004870 2.6e-29 134.8 130 60.0
Cfa025151 Carpinus fangiana HOM05D002391 ORTHO05D004870 4.1e-27 127.5 667 20.7
QL08p036835 Quercus lobata HOM05D000041 ORTHO05D000061 1.8e-22 112.1 88 64.8
FAN18G2005 Fragaria x ananassa HOM05D002391 ORTHO05D017667 8.9e-22 109.8 70 74.3
QL06p008100 Quercus lobata HOM05D000161 ORTHO05D000111 2.9e-20 104.8 84 63.1
C03p60940 Brassica napus HOM05D002391 ORTHO05D004870 6.4e-20 103.6 81 70.4
BolC3t18356H Brassica oleracea HOM05D002391 ORTHO05D004870 6.4e-20 103.6 81 70.4
QL11p025959 Quercus lobata HOM05D002391 ORTHO05D004870 3.5e-18 97.8 261 35.6
TPR.G22870 Trifolium pratense HOM05D002391 ORTHO05D011575 4.6e-18 97.4 91 59.3
TPR.G25208 Trifolium pratense HOM05D002391 ORTHO05D004870 1.7e-17 95.5 94 59.6
TPR.G19723 Trifolium pratense HOM05D002391 ORTHO05D004870 1.4e-14 85.9 59 76.3
TPR.G9012 Trifolium pratense HOM05D002391 ORTHO05D004870 6.8e-14 83.6 57 75.4
FAN19G0487 Fragaria x ananassa HOM05D002391 ORTHO05D017667 1.5e-13 82.4 53 67.9
C09p52400 Brassica napus HOM05D000073 ORTHO05D017582 3.3e-08 64.7 54 61.1
BolC1t04175H Brassica oleracea HOM05D000073 ORTHO05D017582 3.3e-08 64.7 54 61.1
BolC9t58109H Brassica oleracea HOM05D000073 ORTHO05D017582 3.3e-08 64.7 54 61.1
C09p10850 Brassica napus HOM05D000073 ORTHO05D017582 9.5e-08 63.2 54 59.3
Lsat_1_v5_gn_2_25021 Lactuca sativa HOM05D002391 ORTHO05D004870 1.4e-06 59.3 52 63.5
TPR.G34125 Trifolium pratense HOM05D002391 ORTHO05D004870 1.8e-06 58.9 43 65.1
FvH4_5g30911 Fragaria vesca HOM05D002391 ORTHO05D017667 2.4e-06 58.5 45 73.3


User provided reference genes

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