Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 7.9e-123 443.7 217 100.0
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 2.2e-101 372.5 220 88.6
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.3e-80 303.5 236 67.8
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 3.7e-80 302.0 236 67.8
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 6.4e-80 301.2 236 68.6
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 3.5e-78 295.4 259 63.3
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.5e-78 295.4 236 66.9
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 3.0e-77 292.4 234 67.1
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 3.0e-77 292.4 234 67.1
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.9e-77 292.0 236 66.9
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 1.5e-76 290.0 236 66.1
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.5e-76 290.0 227 67.0
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.9e-76 289.7 231 65.4
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 2.5e-76 289.3 239 65.3
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 2.5e-76 289.3 229 66.4
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.3e-76 288.9 239 65.7
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 7.3e-76 287.7 232 65.5
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.2e-75 287.0 236 65.3
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 2.1e-75 286.2 237 63.7
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 2.1e-75 286.2 234 63.7
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 2.1e-75 286.2 239 65.7
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 2.8e-75 285.8 236 64.0
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 3.6e-75 285.4 237 64.1
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 3.6e-75 285.4 225 65.3
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 6.2e-75 284.6 237 63.3
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 6.2e-75 284.6 230 64.3
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 6.2e-75 284.6 232 64.7
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 1.4e-74 283.5 232 62.9
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 1.4e-74 283.5 232 62.9
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 1.4e-74 283.5 235 64.3
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 1.4e-74 283.5 234 64.1
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 1.4e-74 283.5 237 63.7
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 1.4e-74 283.5 237 64.1
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 1.4e-74 283.5 237 64.1
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 1.4e-74 283.5 237 63.3
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.8e-74 283.1 226 65.5
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 1.8e-74 283.1 234 64.1
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.1e-74 282.3 235 64.3
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.1e-74 282.3 235 64.3
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 4.0e-74 282.0 234 63.7
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 4.0e-74 282.0 234 63.7
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 5.2e-74 281.6 235 62.6
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 5.2e-74 281.6 227 65.6
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 5.2e-74 281.6 234 62.8
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 5.2e-74 281.6 230 64.3
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 6.8e-74 281.2 239 64.4
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 8.9e-74 280.8 235 62.1
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 8.9e-74 280.8 235 63.4
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.5e-73 280.0 236 63.1
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 2.0e-73 279.6 230 63.5
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 2.6e-73 279.3 236 62.7
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 2.6e-73 279.3 237 64.6
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 3.4e-73 278.9 229 64.2
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 3.4e-73 278.9 228 65.4
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 3.4e-73 278.9 237 62.9
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 4.4e-73 278.5 229 63.3
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 5.8e-73 278.1 241 62.2
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 7.5e-73 277.7 236 63.1
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 7.5e-73 277.7 221 68.8
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 7.5e-73 277.7 235 65.5
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 7.5e-73 277.7 234 61.1
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 9.8e-73 277.3 239 62.3
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 9.8e-73 277.3 235 63.8
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 1.3e-72 276.9 235 64.3
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 1.3e-72 276.9 235 64.3
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.7e-72 276.6 235 65.1
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.2e-72 276.2 250 60.4
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 2.2e-72 276.2 229 62.9
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 3.7e-72 275.4 230 62.6
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 3.7e-72 275.4 235 62.6
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 6.4e-72 274.6 234 62.0
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 6.4e-72 274.6 240 60.8
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 8.3e-72 274.2 240 61.2
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 3.2e-71 272.3 234 61.1
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 3.2e-71 272.3 235 61.7
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.1e-71 271.9 250 60.0
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 5.4e-71 271.6 236 62.7
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 5.4e-71 271.6 238 63.0
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 9.2e-71 270.8 239 60.3
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 1.2e-70 270.4 236 63.1
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 1.6e-70 270.0 238 62.2
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 4.6e-70 268.5 247 59.9
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 7.8e-70 267.7 235 61.3
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 1.0e-69 267.3 235 63.8
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.7e-69 266.5 235 63.0
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 1.7e-69 266.5 238 61.8
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 2.3e-69 266.2 236 62.7
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 3.9e-69 265.4 246 58.9
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 3.9e-69 265.4 235 62.1
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 3.9e-69 265.4 237 61.6
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 6.6e-69 264.6 239 58.6
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 6.6e-69 264.6 236 60.2
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.1e-68 263.8 221 60.6
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 1.9e-68 263.1 230 60.9
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 2.5e-68 262.7 235 61.7
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 3.3e-68 262.3 236 59.7
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 3.3e-68 262.3 227 61.2
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.2e-67 260.4 237 58.2
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 1.6e-67 260.0 232 58.6
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 2.1e-67 259.6 234 57.3
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 2.8e-67 259.2 223 61.0
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 4.7e-67 258.5 232 58.6
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 4.7e-67 258.5 238 58.4
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 8.1e-67 257.7 235 60.0
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 1.1e-66 257.3 231 58.4
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 1.1e-66 257.3 234 58.5
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 2.3e-66 256.1 238 58.0
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 3.1e-66 255.8 234 59.8
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 4.0e-66 255.4 236 58.9
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 5.2e-66 255.0 229 57.2
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 5.2e-66 255.0 224 58.5
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 6.8e-66 254.6 237 56.5
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 8.9e-66 254.2 237 56.5
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 2.0e-65 253.1 232 58.2
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.0e-65 253.1 232 56.5
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 2.6e-65 252.7 234 56.8
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 2.6e-65 252.7 234 56.8
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.6e-65 252.7 231 57.1
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.6e-65 252.7 232 57.3
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 4.4e-65 251.9 234 56.8
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 1.3e-64 250.4 235 57.9
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 3.8e-64 248.8 278 51.8
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 8.9e-58 227.6 183 63.4
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 2.0e-57 226.5 234 55.6
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 2.7e-54 216.1 188 62.8
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 7.3e-52 208.0 235 54.0
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.1e-50 202.6 187 60.4
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 9.0e-50 201.1 212 51.4
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 5.8e-49 198.4 227 52.4
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 4.2e-47 192.2 227 45.8
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 3.9e-45 185.7 159 61.6
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 5.3e-42 175.3 196 54.1
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.7e-40 170.2 163 57.1
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 1.7e-40 170.2 150 62.7
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 4.9e-40 168.7 157 56.1
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 1.1e-39 167.5 228 43.4
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 5.5e-39 165.2 220 43.6
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 2.1e-38 163.3 187 49.7
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 2.3e-37 159.8 232 43.5
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 2.3e-37 159.8 214 44.4
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.2e-33 147.5 188 48.9
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 5.8e-33 145.2 98 74.5
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.3e-32 144.1 168 50.6
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.9e-31 140.2 110 60.9
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 1.3e-29 134.0 214 43.5
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 2.5e-28 129.8 132 51.5
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 1.2e-25 120.9 235 33.6
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 5.0e-24 115.5 150 43.3
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.1e-22 110.2 88 65.9
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 6.1e-22 108.6 67 77.6
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 1.3e-21 107.5 90 57.8
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.4e-20 101.7 74 74.3
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 9.7e-20 101.3 74 74.3
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 1.3e-19 100.9 77 72.7
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.6e-19 100.5 76 71.1
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 3.7e-19 99.4 135 40.7
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.3e-19 98.6 76 69.7
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 5.3e-18 95.5 75 64.0
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 1.0e-16 91.3 75 56.0
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 8.5e-16 88.2 73 68.5
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.0e-13 81.3 63 69.8
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 5.1e-13 79.0 218 28.9
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 1.1e-12 77.8 191 27.7
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 2.4e-10 70.1 51 76.5
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 2.4e-10 70.1 39 79.5
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 1.4e-07 60.8 54 61.1
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 3.2e-07 59.7 57 66.7
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 4.2e-07 59.3 56 66.1
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 7.2e-07 58.5 40 65.0
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 1.6e-06 57.4 223 26.0


User provided reference genes

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