Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 2.2e-120 435.6 218 100.0
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 8.6e-101 370.5 220 88.6
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 8.6e-93 344.0 236 74.6
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.9e-92 342.8 236 74.2
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 6.2e-91 337.8 236 73.7
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 8.1e-91 337.4 236 74.6
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 1.1e-90 337.0 234 71.8
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 3.1e-90 335.5 225 73.8
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 4.0e-90 335.1 229 73.4
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 8.9e-90 334.0 233 73.8
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 8.9e-90 334.0 233 73.8
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 1.5e-89 333.2 232 71.1
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 1.5e-89 333.2 232 71.1
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.0e-89 332.8 236 72.9
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 4.4e-89 331.6 236 72.0
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 4.4e-89 331.6 234 72.2
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 9.8e-89 330.5 229 72.5
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 1.3e-88 330.1 258 68.2
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 1.3e-88 330.1 229 71.6
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 1.7e-88 329.7 236 69.9
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 2.2e-88 329.3 229 72.1
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 2.2e-88 329.3 234 69.7
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.2e-88 329.3 236 72.9
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.7e-88 328.6 218 76.6
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 4.9e-88 328.2 232 72.0
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.4e-88 327.8 234 70.5
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 6.4e-88 327.8 227 72.7
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 8.3e-88 327.4 234 70.1
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 1.1e-87 327.0 234 70.5
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 1.1e-87 327.0 236 69.5
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 1.1e-87 327.0 234 72.6
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 1.4e-87 326.6 236 71.6
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.4e-87 326.6 234 73.1
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 1.9e-87 326.2 234 69.7
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 1.9e-87 326.2 236 72.0
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 2.4e-87 325.9 236 70.8
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.4e-87 325.9 234 70.9
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 2.4e-87 325.9 234 70.9
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 2.4e-87 325.9 235 71.1
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 2.4e-87 325.9 236 69.9
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 2.4e-87 325.9 236 69.9
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 3.2e-87 325.5 234 70.1
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 5.4e-87 324.7 231 71.0
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 5.4e-87 324.7 227 72.7
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 5.4e-87 324.7 237 70.0
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.1e-87 324.3 234 70.1
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 7.1e-87 324.3 229 70.3
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 9.2e-87 323.9 234 73.1
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 2.1e-86 322.8 229 70.3
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 3.5e-86 322.0 227 72.2
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.6e-86 321.6 249 66.3
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 4.6e-86 321.6 236 69.9
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 7.8e-86 320.9 227 71.8
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 7.8e-86 320.9 235 68.9
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.3e-85 320.1 234 71.4
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 1.3e-85 320.1 236 71.2
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 2.3e-85 319.3 235 68.5
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 3.0e-85 318.9 236 69.5
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 3.0e-85 318.9 230 69.1
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 3.9e-85 318.5 234 68.4
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 3.9e-85 318.5 235 68.1
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 5.1e-85 318.2 234 69.2
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 6.6e-85 317.8 237 69.6
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 6.6e-85 317.8 234 68.4
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 6.6e-85 317.8 237 69.2
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 8.6e-85 317.4 235 68.5
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 8.6e-85 317.4 249 65.9
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 8.6e-85 317.4 229 70.3
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 8.6e-85 317.4 227 71.8
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 1.1e-84 317.0 236 69.1
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 1.1e-84 317.0 235 68.1
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 1.5e-84 316.6 235 67.7
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 1.9e-84 316.2 235 68.5
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 2.5e-84 315.8 234 71.4
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 2.5e-84 315.8 235 70.2
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 2.5e-84 315.8 235 70.2
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 4.3e-84 315.1 245 66.1
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 5.6e-84 314.7 234 70.9
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 2.1e-83 312.8 238 68.5
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 6.2e-83 311.2 234 67.9
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 8.1e-83 310.8 236 69.1
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 1.4e-82 310.1 234 69.7
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 1.4e-82 310.1 237 68.4
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 5.2e-82 308.1 234 70.5
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 1.2e-81 307.0 236 69.5
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.6e-81 305.8 221 67.9
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 4.4e-81 305.1 227 68.7
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 5.8e-81 304.7 235 67.7
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 7.6e-81 304.3 236 67.8
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 1.3e-80 303.5 242 65.7
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 6.4e-80 301.2 235 64.7
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 6.4e-80 301.2 237 67.1
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 8.4e-80 300.8 237 67.1
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.9e-79 299.7 237 64.6
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 2.4e-79 299.3 232 65.5
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 3.2e-79 298.9 234 64.1
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 3.2e-79 298.9 230 66.1
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 7.1e-79 297.7 232 65.5
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 7.1e-79 297.7 238 65.1
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 1.2e-78 297.0 234 65.8
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 1.2e-78 297.0 231 65.4
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 1.6e-78 296.6 234 64.1
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 1.6e-78 296.6 235 64.7
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 3.5e-78 295.4 238 64.7
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 4.6e-78 295.0 223 65.9
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 7.8e-78 294.3 229 64.2
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 1.0e-77 293.9 237 63.3
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 1.3e-77 293.5 237 63.3
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 1.3e-77 293.5 234 66.2
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 2.3e-77 292.7 233 63.9
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 3.0e-77 292.4 232 63.4
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 3.9e-77 292.0 234 63.7
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 3.9e-77 292.0 234 63.7
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 3.9e-77 292.0 231 64.1
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 5.1e-77 291.6 231 64.5
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 6.6e-77 291.2 234 63.7
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 8.6e-77 290.8 232 64.2
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.5e-76 290.0 235 63.0
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 4.3e-76 288.5 233 64.4
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 7.3e-76 287.7 234 63.2
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 1.2e-75 287.0 222 65.8
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 3.6e-75 285.4 279 57.0
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 2.7e-70 269.2 188 73.9
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 5.1e-69 265.0 178 73.0
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 7.3e-68 261.2 234 61.1
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 6.4e-64 248.1 234 60.7
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 8.4e-64 247.7 186 68.3
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 1.3e-61 240.4 220 60.0
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 2.5e-60 236.1 212 58.0
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 5.3e-58 228.4 159 71.1
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 5.3e-58 228.4 222 52.3
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 2.3e-53 213.0 195 62.1
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 1.1e-52 210.7 157 66.9
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.5e-52 210.3 162 66.7
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.1e-47 194.1 188 58.0
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 6.7e-45 184.9 186 54.8
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 6.7e-45 184.9 116 73.3
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 2.5e-44 183.0 220 45.0
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 5.7e-44 181.8 227 44.1
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 4.1e-42 175.6 213 46.5
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 5.3e-42 175.3 231 45.5
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 1.5e-41 173.7 132 64.4
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 3.4e-41 172.6 145 65.5
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.3e-37 159.8 176 54.0
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 5.1e-37 158.7 213 47.4
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 1.5e-33 147.1 130 61.5
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 5.1e-29 132.1 235 36.2
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 8.2e-27 124.8 99 60.6
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 1.5e-25 120.6 132 49.2
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 2.0e-25 120.2 104 60.6
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 3.8e-24 115.9 154 43.5
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.1e-22 110.2 89 65.2
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 2.1e-22 110.2 216 34.3
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 6.1e-22 108.6 67 77.6
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 5.2e-21 105.5 90 56.7
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.4e-20 101.7 74 74.3
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 9.7e-20 101.3 74 74.3
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 1.3e-19 100.9 77 72.7
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.7e-19 100.5 76 71.1
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.3e-19 98.6 76 69.7
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 2.9e-16 89.7 193 29.5
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 8.5e-16 88.2 73 68.5
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 5.5e-15 85.5 86 46.5
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.0e-13 81.3 63 69.8
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 2.4e-10 70.1 51 76.5
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 2.4e-10 70.1 223 28.7
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 3.1e-10 69.7 39 79.5
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 1.5e-07 60.8 54 61.1
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 3.2e-07 59.7 57 66.7
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 4.2e-07 59.3 56 66.1
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 7.2e-07 58.5 40 65.0


User provided reference genes

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