Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 0.0e+00 1333.9 656 100.0
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 3.3e-273 944.9 646 70.1
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 2.4e-271 938.7 661 70.7
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 4.5e-270 934.5 636 70.6
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 5.9e-270 934.1 636 70.9
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 6.7e-266 920.6 634 70.2
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 1.1e-265 919.8 636 69.5
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 1.3e-264 916.4 657 68.2
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 1.1e-263 913.3 634 69.6
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 2.4e-263 912.1 641 69.0
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 2.2e-261 905.6 635 70.1
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 2.2e-261 905.6 662 66.8
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 3.8e-261 904.8 653 67.5
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 1.0e-258 896.7 643 68.0
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 1.4e-258 896.3 644 68.0
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 1.1e-257 893.3 655 66.7
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 2.0e-257 892.5 640 68.0
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 3.3e-257 891.7 640 67.8
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 5.7e-257 891.0 645 67.6
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 2.2e-256 889.0 645 66.8
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 8.2e-256 887.1 641 67.2
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 1.8e-255 885.9 636 66.4
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 3.1e-255 885.2 647 66.0
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 2.0e-254 882.5 651 66.5
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 3.4e-254 881.7 639 68.2
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 2.2e-253 879.0 648 66.7
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 6.5e-253 877.5 645 67.0
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 1.4e-252 876.3 645 65.6
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 1.9e-252 875.9 641 66.6
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 7.2e-252 874.0 639 67.3
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 9.4e-252 873.6 667 65.1
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 2.1e-251 872.5 635 66.6
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.1e-251 872.5 678 63.9
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 4.7e-251 871.3 653 66.2
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 2.6e-249 865.5 642 65.7
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 5.7e-249 864.4 647 65.4
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 7.4e-249 864.0 660 64.8
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.3e-248 863.2 660 64.8
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 3.7e-248 861.7 696 62.9
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 2.4e-247 859.0 646 65.2
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 1.3e-245 853.2 646 65.6
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 2.2e-245 852.4 636 65.7
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 2.2e-245 852.4 637 65.0
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 3.8e-245 851.7 641 66.3
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 5.0e-245 851.3 645 64.0
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 5.0e-245 851.3 650 65.7
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 6.5e-245 850.9 651 65.7
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 6.5e-245 850.9 651 65.7
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 1.9e-244 849.4 646 63.8
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 3.2e-244 848.6 641 65.2
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 8.0e-243 844.0 640 64.7
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 3.3e-241 838.6 641 65.5
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 3.7e-240 835.1 636 64.3
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 1.4e-239 833.2 645 64.5
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 1.4e-239 833.2 657 63.3
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 1.0e-237 827.0 609 65.5
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 4.2e-236 821.6 654 63.0
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 1.2e-235 820.1 641 63.0
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 3.6e-235 818.5 654 62.8
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 4.7e-235 818.1 665 61.5
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 6.1e-235 817.8 645 63.7
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 8.0e-235 817.4 646 63.8
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 1.0e-234 817.0 640 62.5
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 1.4e-234 816.6 643 63.1
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 4.0e-234 815.1 638 63.9
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 2.6e-233 812.4 636 62.6
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 7.5e-233 810.8 640 62.2
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 1.3e-232 810.1 652 61.8
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 1.7e-232 809.7 643 62.1
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 2.2e-232 809.3 645 62.2
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 2.8e-232 808.9 642 62.9
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 1.4e-231 806.6 643 63.0
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 2.4e-231 805.8 633 64.0
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 9.1e-231 803.9 645 62.3
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 2.0e-230 802.7 636 63.2
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 2.9e-229 798.9 638 62.7
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 6.6e-229 797.7 654 61.3
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 5.5e-228 794.7 628 62.7
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 7.2e-228 794.3 640 62.3
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 2.8e-227 792.3 645 60.8
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 1.3e-224 783.5 639 61.0
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 1.7e-224 783.1 656 60.8
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 1.9e-220 769.6 585 64.6
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 9.5e-212 740.7 632 59.2
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 1.2e-211 740.3 644 57.6
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 3.6e-211 738.8 488 72.3
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 6.2e-211 738.0 554 65.7
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 2.2e-208 729.6 607 61.4
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 1.1e-196 690.6 655 54.4
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 5.2e-194 681.8 450 72.4
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 1.7e-184 650.2 624 52.2
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 8.4e-184 647.9 625 53.6
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 3.2e-175 619.4 650 50.6
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 6.1e-158 562.0 507 57.4
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 7.9e-158 561.6 593 50.4
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 7.4e-156 555.1 426 63.4
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 6.7e-149 531.9 357 69.2
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 4.7e-134 482.6 333 67.6
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 2.3e-133 480.3 327 69.1
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 7.7e-129 465.3 469 51.2
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 3.6e-102 376.7 414 50.7
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 2.4e-77 294.3 265 55.5
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 2.9e-67 260.8 175 66.3
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 5.4e-66 256.5 200 64.5
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 6.0e-65 253.1 197 62.9
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 2.2e-51 208.0 190 54.7
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 3.2e-50 204.1 131 73.3
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 1.3e-48 198.7 142 66.2
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 3.3e-47 194.1 167 56.9
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 9.6e-47 192.6 127 73.2
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 1.1e-37 162.5 174 49.4
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 2.5e-31 141.4 110 62.7
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 1.8e-29 135.2 112 58.9
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 2.4e-29 134.8 73 82.2
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 2.6e-23 114.8 64 79.7
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 6.3e-22 110.2 83 61.4


User provided reference genes

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