Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A576G31 Lonicera japonica HOM05D006557 ORTHO05D008177 5.4e-44 180.6 93 100.0
vmacro04846 Vaccinium macrocarpon HOM05D006557 ORTHO05D008177 1.3e-18 96.3 82 62.2
Nitab4.5_0006706g0040 Nicotiana tabacum HOM05D006557 ORTHO05D008177 5.6e-17 90.9 77 63.6
Nitab4.5_0009025g0010 Nicotiana tabacum HOM05D006557 ORTHO05D008177 1.6e-16 89.4 77 63.6
Nn6g34278 Nelumbo nucifera HOM05D006557 ORTHO05D008177 3.6e-16 88.2 81 63.0
Solyc01g091860.4 Solanum lycopersicum HOM05D006557 ORTHO05D008177 3.6e-16 88.2 77 61.0
Sopen01g037630 Solanum pennellii HOM05D006557 ORTHO05D008177 3.6e-16 88.2 77 61.0
PGSC0003DMG400000131 Solanum tuberosum HOM05D006557 ORTHO05D008177 3.6e-16 88.2 77 61.0
Oeu058605.1 Olea europaea HOM05D006557 ORTHO05D008177 6.2e-16 87.4 80 61.2
CiPaw.01G052200 Carya illinoinensis HOM05D006557 ORTHO05D008177 1.4e-15 86.3 85 58.8
MSTRG.17229 Avicennia marina HOM05D006557 ORTHO05D008177 1.8e-15 85.9 85 60.0
ECA236G4623 Erigeron canadensis HOM05D006557 ORTHO05D008177 1.8e-15 85.9 80 62.5
GSVIVG01026363001 Vitis vinifera HOM05D006557 ORTHO05D008177 1.8e-15 85.9 80 61.2
CAN.G170.57 Capsicum annuum HOM05D006557 ORTHO05D008177 3.1e-15 85.1 77 62.3
Cc02_g37160 Coffea canephora HOM05D006557 ORTHO05D008177 6.8e-15 84.0 82 59.8
QL08p050821 Quercus lobata HOM05D006557 ORTHO05D008177 8.9e-15 83.6 81 56.8
Actinidia33449 Actinidia chinensis HOM05D006557 ORTHO05D008177 1.2e-14 83.2 82 52.4
HanXRQChr04g0121771 Helianthus annuus HOM05D006557 ORTHO05D008177 1.5e-14 82.8 82 57.3
Duzib133G0555 Durio zibethinus HOM05D006557 ORTHO05D008177 3.4e-14 81.6 86 51.2
PGR042G0062 Punica granatum HOM05D006557 ORTHO05D008177 5.8e-14 80.9 87 52.9
Rhsim01G0154800 Rhododendron simsii HOM05D006557 ORTHO05D008177 5.8e-14 80.9 91 52.7
Manes.01G262900 Manihot esculenta HOM05D006557 ORTHO05D008177 1.3e-13 79.7 83 53.0
TAR375G0852 Trochodendron aralioides HOM05D006557 ORTHO05D008177 1.3e-13 79.7 81 58.0
FAN03G1058 Fragaria x ananassa HOM05D006557 ORTHO05D008177 2.2e-13 79.0 85 52.9
Gohir.D07G150201 Gossypium hirsutum HOM05D006557 ORTHO05D008177 2.9e-13 78.6 86 51.2
Gorai.001G172000 Gossypium raimondii HOM05D006557 ORTHO05D008177 3.8e-13 78.2 86 50.0
Sabra14G0054700 Salix brachista HOM05D006557 ORTHO05D008177 3.8e-13 78.2 82 51.2
FAN01G0615 Fragaria x ananassa HOM05D006557 ORTHO05D008177 4.9e-13 77.8 85 51.8
Cfa004174 Carpinus fangiana HOM05D006557 ORTHO05D008177 6.4e-13 77.4 80 57.5
Gohir.A07G144300 Gossypium hirsutum HOM05D006557 ORTHO05D008177 8.4e-13 77.0 86 51.2
Haze_15235 Corylus avellana HOM05D006557 ORTHO05D008177 1.1e-12 76.6 79 57.0
FAN06G2259 Fragaria x ananassa HOM05D006557 ORTHO05D008177 1.1e-12 76.6 85 51.8
FAN06G3640 Fragaria x ananassa HOM05D006557 ORTHO05D008177 1.1e-12 76.6 85 51.8
Prupe.2G153600 Prunus persica HOM05D006557 ORTHO05D008177 1.1e-12 76.6 90 48.9
Thecc.01G369600 Theobroma cacao HOM05D006557 ORTHO05D008177 1.1e-12 76.6 86 50.0
Peaxi162Scf00021g00314 Petunia axillaris HOM05D006557 ORTHO05D008177 1.4e-12 76.3 91 50.5
Potri.014G077700 Populus trichocarpa HOM05D006557 ORTHO05D008177 1.4e-12 76.3 82 50.0
MBI04_g40842_MAGBIO Magnolia biondii HOM05D006557 ORTHO05D008177 2.4e-12 75.5 77 55.8
DCAR_008582 Daucus carota HOM05D006557 ORTHO05D008177 3.2e-12 75.1 80 57.5
FvH4_7g12930 Fragaria vesca HOM05D006557 ORTHO05D008177 3.2e-12 75.1 84 52.4
FAN10G2465 Fragaria x ananassa HOM05D006557 ORTHO05D008177 5.4e-12 74.3 85 50.6
Lalb_Chr01g0021061 Lupinus albus HOM05D006557 ORTHO05D008177 5.4e-12 74.3 81 50.6
Sc02g0002240 Simmondsia chinensis HOM05D006557 ORTHO05D008177 5.4e-12 74.3 79 54.4
EL10Ac1g00969 Beta vulgaris HOM05D006557 ORTHO05D008177 9.3e-12 73.6 80 55.0
Migut.B01677 Erythranthe guttata HOM05D006557 ORTHO05D008177 9.3e-12 73.6 81 53.1
RcHm_v2.0_Chr1g0352061 Rosa chinensis HOM05D006557 ORTHO05D008177 9.3e-12 73.6 88 50.0
TPR.G37774 Trifolium pratense HOM05D006557 ORTHO05D008177 9.3e-12 73.6 79 51.9
Lsat_1_v5_gn_7_8181 Lactuca sativa HOM05D006557 ORTHO05D008177 1.2e-11 73.2 81 53.1
TWI23G0976 Tripterygium wilfordii HOM05D006557 ORTHO05D008177 1.2e-11 73.2 82 50.0
CANSAT56G3931 Cannabis sativa HOM05D006557 ORTHO05D008177 1.6e-11 72.8 89 48.3
CSS0001854 Camellia sinensis var. sinensis HOM05D006557 ORTHO05D008177 2.1e-11 72.4 77 54.5
AUR62033372 Chenopodium quinoa HOM05D006557 ORTHO05D008177 2.7e-11 72.0 82 54.9
Medtr7g076590 Medicago truncatula HOM05D006557 ORTHO05D008177 2.7e-11 72.0 79 53.2
Hund27329 Selenicereus undatus HOM05D006557 ORTHO05D008177 3.5e-11 71.6 82 47.6
PSO478G0993 Papaver somniferum HOM05D006557 ORTHO05D008177 4.6e-11 71.2 81 56.8
Ciclev10019481m.g Citrus clementina HOM05D006557 ORTHO05D008177 7.8e-11 70.5 88 52.3
arahy.Tifrunner.gnm1.ann1.P0RXA9 Arachis hypogaea HOM05D006557 ORTHO05D008177 1.0e-10 70.1 83 48.2
Glyma.18G228300 Glycine max HOM05D006557 ORTHO05D008177 1.0e-10 70.1 83 50.6
HPP92_025494 Vanilla planifolia HOM05D006557 ORTHO05D008177 1.7e-10 69.3 77 49.4
SalBow3G2355 Salvia bowleyana HOM05D006557 ORTHO05D008177 2.3e-10 68.9 79 50.6
Atru.chr5.390 Acer truncatum HOM05D006557 ORTHO05D008177 3.0e-10 68.6 86 47.7
Atru.chr5.396 Acer truncatum HOM05D006557 ORTHO05D008177 3.0e-10 68.6 86 47.7
Aqoxy7G00469 Aquilegia oxysepala HOM05D006557 ORTHO05D008177 3.0e-10 68.6 77 55.8
AUR62004285 Chenopodium quinoa HOM05D006557 ORTHO05D008177 3.9e-10 68.2 79 50.6
Phvul.008G069900 Phaseolus vulgaris HOM05D006557 ORTHO05D008177 6.6e-10 67.4 83 49.4
Psat3g112120 Pisum sativum HOM05D006557 ORTHO05D008177 8.7e-10 67.0 79 49.4
AL1G10410 Arabidopsis lyrata HOM05D006557 ORTHO05D008177 2.5e-09 65.5 76 52.6
Carub.0001s0032 Capsella rubella HOM05D006557 ORTHO05D008177 2.5e-09 65.5 76 53.9
Sed0001202 Sechium edule HOM05D006557 ORTHO05D008177 3.3e-09 65.1 92 44.6
BraA09t42268Z Brassica rapa HOM05D006557 ORTHO05D008177 4.3e-09 64.7 76 48.7
Glyma.09G263800 Glycine max HOM05D006557 ORTHO05D008177 5.6e-09 64.3 83 47.0
C08p53930 Brassica napus HOM05D006557 ORTHO05D008177 7.3e-09 63.9 77 49.4
BolC8t52906H Brassica oleracea HOM05D006557 ORTHO05D008177 7.3e-09 63.9 77 49.4
CsaV3_6G041250 Cucumis sativus L. HOM05D006557 ORTHO05D008177 7.3e-09 63.9 91 44.0
Os06g0127200 Oryza sativa ssp. japonica HOM05D006557 ORTHO05D008177 9.6e-09 63.5 83 47.0
Sp1g00380 Schrenkiella parvula HOM05D006557 ORTHO05D008177 9.6e-09 63.5 80 50.0
CARHR000440 Cardamine hirsuta HOM05D006557 ORTHO05D008177 1.3e-08 63.2 76 51.3
Eucgr.E00220 Eucalyptus grandis HOM05D006557 ORTHO05D008177 1.3e-08 63.2 81 45.7
Thhalv10007294m.g Eutrema salsugineum HOM05D006557 ORTHO05D008177 1.3e-08 63.2 84 48.8
Aa31LG1G11240 Aethionema arabicum HOM05D006557 ORTHO05D008177 1.6e-08 62.8 80 43.8
ClCG01G015140 Citrullus lanatus HOM05D006557 ORTHO05D008177 1.6e-08 62.8 92 42.4
SEGI_15167 Sequoiadendron giganteum HOM05D006557 ORTHO05D008177 1.6e-08 62.8 85 48.2
MELO3C024600.2 Cucumis melo HOM05D006557 ORTHO05D008177 2.8e-08 62.0 91 42.9
Lj1g0000530 Lotus japonicus HOM05D006557 ORTHO05D008177 2.8e-08 62.0 86 41.9
ATR0757G115 Amborella trichopoda HOM05D006557 ORTHO05D008177 6.2e-08 60.8 86 47.7
Zm00001eb269430 Zea mays HOM05D006557 ORTHO05D008177 1.8e-07 59.3 80 46.2
Mapoly0052s0068 Marchantia polymorpha HOM05D006557 ORTHO05D008177 3.1e-07 58.5 88 40.9
CDE11G0468 Ceratophyllum demersum HOM05D006557 ORTHO05D008177 4.0e-07 58.2 85 40.0
unitig_8.g3814 Utricularia gibba HOM05D006557 ORTHO05D008177 9.9e-06 53.5 77 44.2


User provided reference genes

Program Settings