Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A557G31 Lonicera japonica HOM05D004530 ORTHO05D005839 1.3e-137 493.0 249 100.0
Dinv44062 Davidia involucrata HOM05D004530 ORTHO05D005839 1.0e-81 307.4 251 65.3
Actinidia12143 Actinidia chinensis HOM05D004530 ORTHO05D005839 2.1e-79 299.7 250 61.6
Rhsim07G0036000 Rhododendron simsii HOM05D004530 ORTHO05D005839 5.4e-75 285.0 250 60.0
Hma1.2p1_0041F.1_g025350 Hydrangea macrophylla HOM05D004530 ORTHO05D005839 4.6e-74 282.0 281 55.5
QL04p030285 Quercus lobata HOM05D004530 ORTHO05D005839 4.6e-74 282.0 250 59.6
HanXRQChr03g0093061 Helianthus annuus HOM05D004530 ORTHO05D005839 1.3e-73 280.4 250 54.8
Thecc.01G394900 Theobroma cacao HOM05D004530 ORTHO05D005839 3.0e-73 279.3 250 58.4
Sopen01g036030 Solanum pennellii HOM05D004530 ORTHO05D005839 3.9e-73 278.9 249 57.0
TAR375G0493 Trochodendron aralioides HOM05D004530 ORTHO05D005839 3.9e-73 278.9 250 56.0
TAR629G3313 Trochodendron aralioides HOM05D004530 ORTHO05D005839 5.1e-73 278.5 251 55.8
Lsat_1_v5_gn_3_126420 Lactuca sativa HOM05D004530 ORTHO05D005839 1.5e-72 276.9 251 56.6
vmacro13497 Vaccinium macrocarpon HOM05D004530 ORTHO05D005839 1.9e-72 276.6 250 58.0
Solyc01g090230.3 Solanum lycopersicum HOM05D004530 ORTHO05D005839 7.3e-72 274.6 249 56.2
GSVIVG01018280001 Vitis vinifera HOM05D004530 ORTHO05D005839 3.6e-71 272.3 250 56.4
COL.COLO4_12407 Corchorus olitorius HOM05D004530 ORTHO05D005839 4.0e-70 268.9 249 56.2
DCAR_029469 Daucus carota HOM05D004530 ORTHO05D005839 3.4e-69 265.8 279 52.3
CAN.G1473.6 Capsicum annuum HOM05D004530 ORTHO05D005839 4.4e-69 265.4 249 54.2
ECA240G1126 Erigeron canadensis HOM05D004530 ORTHO05D005839 9.9e-69 264.2 250 54.0
MSTRG.20690 Avicennia marina HOM05D004530 ORTHO05D005839 2.2e-68 263.1 250 55.2
Cc02_g25120 Coffea canephora HOM05D004530 ORTHO05D005839 6.4e-68 261.5 250 55.6
Nitab4.5_0000920g0020 Nicotiana tabacum HOM05D004530 ORTHO05D005839 6.4e-68 261.5 249 54.2
Atru.chr5.126 Acer truncatum HOM05D004530 ORTHO05D005839 1.1e-67 260.8 250 52.8
CiPaw.13G026100 Carya illinoinensis HOM05D004530 ORTHO05D005839 1.9e-67 260.0 250 57.2
SalBow5G0820 Salvia bowleyana HOM05D004530 ORTHO05D005839 5.4e-67 258.5 264 52.3
Migut.B01535 Erythranthe guttata HOM05D004530 ORTHO05D005839 4.6e-66 255.4 251 53.4
Duzib138G0269 Durio zibethinus HOM05D004530 ORTHO05D005839 7.8e-66 254.6 269 52.0
Haze_02848 Corylus avellana HOM05D004530 ORTHO05D005839 1.0e-65 254.2 251 56.6
RcHm_v2.0_Chr1g0347921 Rosa chinensis HOM05D004530 ORTHO05D005839 3.9e-65 252.3 251 56.2
Eucgr.E01549 Eucalyptus grandis HOM05D004530 ORTHO05D005839 5.1e-65 251.9 255 54.5
MD07G1109200 Malus domestica HOM05D004530 ORTHO05D005839 5.1e-65 251.9 250 55.6
Gorai.004G166100 Gossypium raimondii HOM05D004530 ORTHO05D005839 6.6e-65 251.5 250 52.4
Gohir.D08G159900 Gossypium hirsutum HOM05D004530 ORTHO05D005839 8.7e-65 251.1 250 52.4
Potri.002G137800 Populus trichocarpa HOM05D004530 ORTHO05D005839 5.6e-64 248.4 251 53.0
PGR042G2176 Punica granatum HOM05D004530 ORTHO05D005839 5.6e-64 248.4 252 55.2
Ciclev10019258m.g Citrus clementina HOM05D004530 ORTHO05D005839 2.1e-63 246.5 253 53.4
Manes.01G274600 Manihot esculenta HOM05D004530 ORTHO05D005839 3.6e-63 245.7 253 51.4
Nn1g00849 Nelumbo nucifera HOM05D004530 ORTHO05D005839 4.8e-63 245.4 250 52.0
Prupe.2G131900 Prunus persica HOM05D004530 ORTHO05D005839 8.1e-63 244.6 251 54.2
Duzib133G0606 Durio zibethinus HOM05D004530 ORTHO05D005839 2.4e-62 243.0 271 50.9
Gohir.A08G138600 Gossypium hirsutum HOM05D004530 ORTHO05D005839 2.4e-62 243.0 250 51.6
MD02G1212800 Malus domestica HOM05D004530 ORTHO05D005839 1.5e-61 240.4 250 56.0
Ah.05g173100 Amaranthus hybridus HOM05D004530 ORTHO05D005839 2.6e-61 239.6 249 52.6
Hund27405 Selenicereus undatus HOM05D004530 ORTHO05D005839 2.9e-60 236.1 251 49.4
Nn6g33827 Nelumbo nucifera HOM05D004530 ORTHO05D005839 3.8e-60 235.7 249 51.4
AUR62013743 Chenopodium quinoa HOM05D004530 ORTHO05D005839 4.9e-60 235.3 248 49.6
THA.LOC104817000 Tarenaya hassleriana HOM05D004530 ORTHO05D005839 8.4e-60 234.6 255 48.6
arahy.Tifrunner.gnm1.ann1.BH8PB4 Arachis hypogaea HOM05D004530 ORTHO05D005839 1.1e-59 234.2 249 48.2
Gohir.D12G099900 Gossypium hirsutum HOM05D004530 ORTHO05D005839 1.4e-59 233.8 250 49.2
arahy.Tifrunner.gnm1.ann1.WR8IC8 Arachis hypogaea HOM05D004530 ORTHO05D005839 2.4e-59 233.0 249 47.8
AUR62043872 Chenopodium quinoa HOM05D004530 ORTHO05D005839 2.4e-59 233.0 247 48.2
MBI04_g41763_MAGBIO Magnolia biondii HOM05D004530 ORTHO05D005839 5.4e-59 231.9 262 45.8
Nitab4.5_0007027g0030 Nicotiana tabacum HOM05D004530 ORTHO05D005839 7.1e-59 231.5 241 51.5
AUR62023408 Chenopodium quinoa HOM05D004530 ORTHO05D005839 9.3e-59 231.1 250 48.8
Aqoxy7G00763 Aquilegia oxysepala HOM05D004530 ORTHO05D005839 1.6e-58 230.3 251 49.4
Medtr8g006895 Medicago truncatula HOM05D004530 ORTHO05D005839 1.6e-58 230.3 251 50.2
TWI59G1339 Tripterygium wilfordii HOM05D004530 ORTHO05D005839 2.1e-58 229.9 251 49.0
Potri.014G047600 Populus trichocarpa HOM05D004530 ORTHO05D005839 2.7e-58 229.6 250 49.6
Sc26g0001580 Simmondsia chinensis HOM05D004530 ORTHO05D005839 2.7e-58 229.6 254 47.6
Psat4g224840 Pisum sativum HOM05D004530 ORTHO05D005839 3.5e-58 229.2 250 49.2
Gorai.008G108800 Gossypium raimondii HOM05D004530 ORTHO05D005839 4.6e-58 228.8 250 48.4
Lj3g0003084 Lotus japonicus HOM05D004530 ORTHO05D005839 4.6e-58 228.8 250 49.6
MELO3C005943.2 Cucumis melo HOM05D004530 ORTHO05D005839 6.0e-58 228.4 249 52.2
Ca_25804_v3 Cicer arietinum L. HOM05D004530 ORTHO05D005839 7.9e-58 228.0 250 49.2
CsaV3_3G007220 Cucumis sativus L. HOM05D004530 ORTHO05D005839 1.0e-57 227.6 249 51.8
Glyma.20G070800 Glycine max HOM05D004530 ORTHO05D005839 1.0e-57 227.6 250 50.8
Carub.0001s0010 Capsella rubella HOM05D004530 ORTHO05D005839 1.8e-57 226.9 248 48.0
CDE06G0463 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 1.8e-57 226.9 252 46.4
Hund17085 Selenicereus undatus HOM05D004530 ORTHO05D005839 1.8e-57 226.9 250 48.4
Sed0010787 Sechium edule HOM05D004530 ORTHO05D005839 2.3e-57 226.5 249 51.4
BcaB03g13633 Brassica carinata HOM05D004530 ORTHO05D005839 1.1e-56 224.2 252 50.0
VMungo0331G0336 Vigna mungo HOM05D004530 ORTHO05D005839 1.9e-56 223.4 249 48.6
AT1G02120 Arabidopsis thaliana HOM05D004530 ORTHO05D005839 3.3e-56 222.6 249 49.4
Lalb_Chr12g0210571 Lupinus albus HOM05D004530 ORTHO05D005839 4.3e-56 222.2 250 48.8
FAN10G4098 Fragaria x ananassa HOM05D004530 ORTHO05D005839 5.6e-56 221.9 252 49.2
Glyma.10G120400 Glycine max HOM05D004530 ORTHO05D005839 5.6e-56 221.9 252 49.2
EL10Ac1g00762 Beta vulgaris HOM05D004530 ORTHO05D005839 9.6e-56 221.1 248 47.2
C05p00080 Brassica napus HOM05D004530 ORTHO05D005839 1.3e-55 220.7 251 49.8
BolC5t28795H Brassica oleracea HOM05D004530 ORTHO05D005839 1.3e-55 220.7 251 49.8
FAN06G5079 Fragaria x ananassa HOM05D004530 ORTHO05D005839 1.6e-55 220.3 252 48.4
FAN10G1666 Fragaria x ananassa HOM05D004530 ORTHO05D005839 1.6e-55 220.3 252 48.8
PSO675G1201 Papaver somniferum HOM05D004530 ORTHO05D005839 1.6e-55 220.3 255 48.6
CARHR000210 Cardamine hirsuta HOM05D004530 ORTHO05D005839 2.1e-55 219.9 250 48.8
ATR0057G115 Amborella trichopoda HOM05D004530 ORTHO05D005839 2.8e-55 219.5 256 46.5
FAN01G0552 Fragaria x ananassa HOM05D004530 ORTHO05D005839 3.7e-55 219.2 252 48.4
FvH4_7g10200 Fragaria vesca HOM05D004530 ORTHO05D005839 6.2e-55 218.4 252 48.0
Thhalv10007106m.g Eutrema salsugineum HOM05D004530 ORTHO05D005839 8.1e-55 218.0 250 49.2
AL1G10110 Arabidopsis lyrata HOM05D004530 ORTHO05D005839 1.4e-54 217.2 252 47.6
A10p00110 Brassica napus HOM05D004530 ORTHO05D005839 1.4e-54 217.2 251 49.4
BraA10t42289Z Brassica rapa HOM05D004530 ORTHO05D005839 1.4e-54 217.2 251 49.4
Lalb_Chr07g0195421 Lupinus albus HOM05D004530 ORTHO05D005839 1.4e-54 217.2 251 49.0
Gohir.D08G067550 Gossypium hirsutum HOM05D004530 ORTHO05D005839 1.8e-54 216.9 275 46.5
PSO732G0778 Papaver somniferum HOM05D004530 ORTHO05D005839 2.4e-54 216.5 256 48.0
TPR.G33134 Trifolium pratense HOM05D004530 ORTHO05D005839 2.4e-54 216.5 250 48.0
Phvul.010G049900 Phaseolus vulgaris HOM05D004530 ORTHO05D005839 4.0e-54 215.7 249 47.4
FAN03G1354 Fragaria x ananassa HOM05D004530 ORTHO05D005839 6.9e-54 214.9 252 48.0
PSO832G0798 Papaver somniferum HOM05D004530 ORTHO05D005839 2.0e-53 213.4 255 45.5
Gorai.004G070300 Gossypium raimondii HOM05D004530 ORTHO05D005839 1.7e-52 210.3 275 46.2
Sabra14G0034600 Salix brachista HOM05D004530 ORTHO05D005839 2.9e-52 209.5 236 48.3
HPP92_022509 Vanilla planifolia HOM05D004530 ORTHO05D005839 1.3e-49 200.7 267 40.4
Lj7A546T14 Lonicera japonica HOM05D004530 ORTHO05D005839 2.3e-49 199.9 165 61.8
SEGI_20424 Sequoiadendron giganteum HOM05D004530 ORTHO05D005839 2.3e-49 199.9 263 42.2
Zm00001eb105340 Zea mays HOM05D004530 ORTHO05D005839 4.3e-48 195.7 250 43.6
Zm00001eb321770 Zea mays HOM05D004530 ORTHO05D005839 3.7e-47 192.6 258 43.0
unitig_26.g9593 Utricularia gibba HOM05D004530 ORTHO05D005839 5.3e-46 188.7 250 44.4
Gohir.A08G058400 Gossypium hirsutum HOM05D004530 ORTHO05D005839 8.4e-44 181.4 273 40.7
Pp3c9_25660 Physcomitrium patens HOM05D004530 ORTHO05D005839 3.2e-43 179.5 272 38.2
TWI14G0541 Tripterygium wilfordii HOM05D004530 ORTHO05D005839 4.2e-43 179.1 236 45.3
Mapoly0083s0023 Marchantia polymorpha HOM05D004530 ORTHO05D005839 3.9e-41 172.6 271 37.6
Gohir.A12G097000 Gossypium hirsutum HOM05D004530 ORTHO05D005839 2.5e-40 169.9 292 38.4
CDE06G1928 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 2.5e-35 153.3 242 38.8
Gorai.008G121000 Gossypium raimondii HOM05D004530 ORTHO05D005839 2.3e-33 146.7 90 71.1
Gohir.D12G111650 Gossypium hirsutum HOM05D004530 ORTHO05D005839 1.5e-32 144.1 90 70.0
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 3.7e-31 139.4 251 37.5
FAN06G2217 Fragaria x ananassa HOM05D004530 ORTHO05D005839 1.8e-30 137.1 205 42.4
Cpa.g.sc22.81 Carica papaya HOM05D004530 ORTHO05D005839 2.4e-30 136.7 160 52.5
CBR_g3459 Chara braunii HOM05D004530 ORTHO05D000353 9.1e-30 134.8 284 31.0
ClCG05G000120 Citrullus lanatus HOM05D004530 ORTHO05D005839 1.2e-29 134.4 252 38.1
AagrBONN_evm.TU.Sc2ySwM_117.1176 Anthoceros agrestis HOM05D004530 ORTHO05D005839 4.5e-29 132.5 267 35.2
CDE11G0737 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 1.0e-25 121.3 248 36.3
SGA_v2.0_scaffold52G19226 Striga asiatica HOM05D004530 ORTHO05D005839 4.8e-23 112.5 220 35.9
Ah.05g174030 Amaranthus hybridus HOM05D004530 ORTHO05D005839 8.2e-23 111.7 204 35.8
CiPaw.03G262200 Carya illinoinensis HOM05D004530 ORTHO05D005839 4.1e-22 109.4 147 47.6
Aa31LG1G11490 Aethionema arabicum HOM05D004530 ORTHO05D005839 1.4e-17 94.4 226 35.4
SMO228G0106 Selaginella moellendorffii HOM05D004530 ORTHO05D005839 3.0e-17 93.2 248 30.2
CSS0024507 Camellia sinensis var. sinensis HOM05D004530 ORTHO05D005839 1.5e-16 90.9 110 50.9
CSS0020970 Camellia sinensis var. sinensis HOM05D004530 ORTHO05D005839 6.3e-15 85.5 317 28.4
arahy.Tifrunner.gnm1.ann1.VG61HV Arachis hypogaea HOM05D000043 ORTHO05D001371 1.6e-13 80.9 58 62.1
arahy.Tifrunner.gnm1.ann1.8E8ZZ7 Arachis hypogaea HOM05D004530 ORTHO05D001371 5.9e-13 79.0 71 53.5
Aa31LG1G11480 Aethionema arabicum HOM05D004530 ORTHO05D005839 1.3e-12 77.8 45 71.1
arahy.Tifrunner.gnm1.ann1.11RBMI Arachis hypogaea HOM05D004530 ORTHO05D085463 2.2e-12 77.0 58 58.6
CDE07G0055 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 1.9e-11 73.9 59 55.9
MCO09G309 Micromonas commoda HOM05D004530 ORTHO05D005839 9.4e-11 71.6 246 26.4
RcHm_v2.0_Chr1g0323881 Rosa chinensis HOM05D000518 ORTHO05D037482 8.8e-09 65.1 117 38.5
Cre16.g664050 Chlamydomonas reinhardtii HOM05D004530 ORTHO05D005839 5.7e-08 62.4 250 28.0
arahy.Tifrunner.gnm1.ann1.T8K23Z Arachis hypogaea HOM05D000043 ORTHO05D001371 7.5e-08 62.0 44 63.6
PRCOL_00001515 Prasinoderma coloniale HOM05D004530 ORTHO05D005839 3.7e-07 59.7 311 23.8


User provided reference genes

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