Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A551T50 Lonicera japonica HOM05D002320 ORTHO05D002428 2.5e-46 189.5 197 100.0
DCAR_025039 Daucus carota HOM05D002320 ORTHO05D002428 1.2e-29 134.0 179 92.2
Ca_14792_v3 Cicer arietinum L. HOM05D002320 ORTHO05D002428 4.7e-21 105.5 179 86.0
Lalb_Chr19g0126261 Lupinus albus HOM05D002320 ORTHO05D002428 1.8e-20 103.6 50 90.0
Oeu032491.1 Olea europaea HOM05D002320 ORTHO05D002428 2.0e-19 100.1 50 88.0
Lalb_Chr05g0220861 Lupinus albus HOM05D002320 ORTHO05D002428 2.8e-18 96.3 48 87.5
AL1G35240 Arabidopsis lyrata HOM05D003354 ORTHO05D003786 3.7e-18 95.9 47 83.0
Oeu034850.1 Olea europaea HOM05D002320 ORTHO05D002428 6.3e-18 95.1 50 82.0
BcaC07g38036 Brassica carinata HOM05D002320 ORTHO05D002428 3.1e-17 92.8 43 90.7
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 7.0e-17 91.7 43 93.0
BcaNung00120 Brassica carinata HOM05D002095 ORTHO05D002058 1.2e-16 90.9 172 82.0
arahy.Tifrunner.gnm1.ann1.GIYH3D Arachis hypogaea HOM05D002320 ORTHO05D002428 3.5e-16 89.4 76 55.3
TPR.G28182 Trifolium pratense HOM05D002320 ORTHO05D002428 2.7e-13 79.7 50 70.0
QL04p026587 Quercus lobata HOM05D002320 ORTHO05D002428 3.9e-12 75.9 179 80.4
QL04p026989 Quercus lobata HOM05D002320 ORTHO05D002428 3.9e-12 75.9 179 80.4
BcaB03g15937 Brassica carinata HOM05D003354 ORTHO05D003786 5.2e-12 75.5 47 61.7
COL.COLO4_12365 Corchorus olitorius HOM05D002320 ORTHO05D002428 1.5e-11 73.9 179 80.4
TPR.G32157 Trifolium pratense HOM05D002320 ORTHO05D002428 1.5e-11 73.9 179 78.8
Duzib138G0483 Durio zibethinus HOM05D002320 ORTHO05D002428 2.0e-11 73.6 179 80.4
Glyma.03G106902 Glycine max HOM05D002320 ORTHO05D002428 2.0e-11 73.6 179 78.8
arahy.Tifrunner.gnm1.ann1.7MRV43 Arachis hypogaea HOM05D002320 ORTHO05D002428 2.6e-11 73.2 179 78.2
arahy.Tifrunner.gnm1.ann1.PM0Q6H Arachis hypogaea HOM05D002320 ORTHO05D002428 2.6e-11 73.2 179 78.2
Glyma.07G118501 Glycine max HOM05D002320 ORTHO05D002428 2.6e-11 73.2 179 79.3
Nitab4.5_0000563g0100 Nicotiana tabacum HOM05D002320 ORTHO05D002428 2.6e-11 73.2 179 79.3
Duzib133G1189 Durio zibethinus HOM05D002320 ORTHO05D002428 4.4e-11 72.4 179 79.9
Cfa011036 Carpinus fangiana HOM05D002320 ORTHO05D002428 5.7e-11 72.0 179 79.3
Cc02_g25440 Coffea canephora HOM05D002320 ORTHO05D002428 5.7e-11 72.0 179 79.9
Haze_02889 Corylus avellana HOM05D002320 ORTHO05D002428 5.7e-11 72.0 179 79.3
Thecc.01G401100 Theobroma cacao HOM05D002320 ORTHO05D002428 5.7e-11 72.0 179 79.9
MELO3C020368.2 Cucumis melo HOM05D002320 ORTHO05D002428 7.4e-11 71.6 180 75.6
Gorai.004G167400 Gossypium raimondii HOM05D002320 ORTHO05D002428 7.4e-11 71.6 179 79.9
Nitab4.5_0002341g0040 Nicotiana tabacum HOM05D002320 ORTHO05D002428 7.4e-11 71.6 179 78.2
Sed0019875 Sechium edule HOM05D002320 ORTHO05D002428 7.4e-11 71.6 180 76.1
C06p51660 Brassica napus HOM05D003354 ORTHO05D003786 9.7e-11 71.2 39 64.1
ClCG06G008100 Citrullus lanatus HOM05D002320 ORTHO05D002428 9.7e-11 71.2 180 75.0
CsaV3_2G011090 Cucumis sativus L. HOM05D002320 ORTHO05D002428 9.7e-11 71.2 180 75.0
AL6G53550 Arabidopsis lyrata HOM05D002320 ORTHO05D002428 1.3e-10 70.9 179 78.2
Gohir.A11G074400 Gossypium hirsutum HOM05D002320 ORTHO05D002428 1.3e-10 70.9 179 78.2
Gohir.D11G079100 Gossypium hirsutum HOM05D002320 ORTHO05D002428 1.3e-10 70.9 179 78.2
Gorai.007G084700 Gossypium raimondii HOM05D002320 ORTHO05D002428 1.3e-10 70.9 179 78.2
Prupe.2G119300 Prunus persica HOM05D002320 ORTHO05D002428 1.7e-10 70.5 190 75.8
Ciclev10019866m.g Citrus clementina HOM05D002320 ORTHO05D002428 2.2e-10 70.1 179 78.2
MD07G1094800 Malus domestica HOM05D002320 ORTHO05D002428 2.2e-10 70.1 190 75.3
Potri.002G140000 Populus trichocarpa HOM05D002320 ORTHO05D002428 2.2e-10 70.1 179 78.8
Actinidia21624 Actinidia chinensis HOM05D002320 ORTHO05D002428 2.8e-10 69.7 179 77.7
CiPaw.13G023000 Carya illinoinensis HOM05D002320 ORTHO05D002428 2.8e-10 69.7 179 78.8
Rhsim07G0038400 Rhododendron simsii HOM05D002320 ORTHO05D002428 3.7e-10 69.3 179 78.2
vmacro13526 Vaccinium macrocarpon HOM05D002320 ORTHO05D002428 3.7e-10 69.3 179 78.2
GSVIVG01018327001 Vitis vinifera HOM05D002320 ORTHO05D002428 3.7e-10 69.3 179 78.8
Gorai.008G110800 Gossypium raimondii HOM05D002320 ORTHO05D002428 4.8e-10 68.9 179 78.8
Prupe.5G052900 Prunus persica HOM05D002320 ORTHO05D002428 4.8e-10 68.9 179 77.7
Hma1.2p1_1397F.1_g280690 Hydrangea macrophylla HOM05D002320 ORTHO05D002428 6.3e-10 68.6 179 78.8
Sed0021076 Sechium edule HOM05D002320 ORTHO05D002428 6.3e-10 68.6 180 74.4
Sopen10g026210 Solanum pennellii HOM05D002320 ORTHO05D002428 8.2e-10 68.2 179 77.1
AUR62013774 Chenopodium quinoa HOM05D002320 ORTHO05D002428 1.1e-09 67.8 179 78.8
AUR62023382 Chenopodium quinoa HOM05D002320 ORTHO05D002428 1.1e-09 67.8 179 78.8
Actinidia05782 Actinidia chinensis HOM05D002320 ORTHO05D002428 1.4e-09 67.4 179 77.7
Sabra02G0109300 Salix brachista HOM05D002320 ORTHO05D002428 1.4e-09 67.4 179 78.8
ECA248G1070 Erigeron canadensis HOM05D001479 ORTHO05D001401 1.8e-09 67.0 33 87.9
Lsat_1_v5_gn_1_83741 Lactuca sativa HOM05D002320 ORTHO05D002428 1.8e-09 67.0 33 87.9
Manes.01G273200 Manihot esculenta HOM05D002320 ORTHO05D002428 1.8e-09 67.0 179 78.2
PGSC0003DMG400013126 Solanum tuberosum HOM05D002320 ORTHO05D002428 1.8e-09 67.0 179 77.1
THA.LOC104814106 Tarenaya hassleriana HOM05D002320 ORTHO05D002428 1.8e-09 67.0 179 78.2
CiPaw.14G017800 Carya illinoinensis HOM05D002320 ORTHO05D002428 2.4e-09 66.6 179 77.1
Ca_07417_v3 Cicer arietinum L. HOM05D002320 ORTHO05D002428 2.4e-09 66.6 179 77.1
Psat3g153400 Pisum sativum HOM05D002320 ORTHO05D002428 2.4e-09 66.6 179 77.7
TPR.G10189 Trifolium pratense HOM05D002320 ORTHO05D002428 2.4e-09 66.6 179 75.4
Sc26g0001690 Simmondsia chinensis HOM05D002320 ORTHO05D002428 3.1e-09 66.2 179 78.8
TWI14G0379 Tripterygium wilfordii HOM05D002320 ORTHO05D002428 3.1e-09 66.2 33 90.9
TWI59G1296 Tripterygium wilfordii HOM05D002320 ORTHO05D002428 3.1e-09 66.2 33 90.9
RcHm_v2.0_Chr1g0344931 Rosa chinensis HOM05D002320 ORTHO05D002428 4.1e-09 65.9 44 72.7
FAN03G0444 Fragaria x ananassa HOM05D002320 ORTHO05D002428 5.3e-09 65.5 44 72.7
FAN10G0730 Fragaria x ananassa HOM05D002320 ORTHO05D002428 5.3e-09 65.5 44 72.7
Potri.014G052300 Populus trichocarpa HOM05D002320 ORTHO05D002428 5.3e-09 65.5 33 90.9
vmacro21070 Vaccinium macrocarpon HOM05D002320 ORTHO05D002428 5.3e-09 65.5 33 90.9
CANSAT25G2111 Cannabis sativa HOM05D002320 ORTHO05D002428 7.0e-09 65.1 33 84.8
CAN.G586.2 Capsicum annuum HOM05D002320 ORTHO05D002428 7.0e-09 65.1 179 76.0
Thhalv10028664m.g Eutrema salsugineum HOM05D002320 ORTHO05D002428 7.0e-09 65.1 179 77.7
Gohir.D06G130300 Gossypium hirsutum HOM05D002320 ORTHO05D002428 7.0e-09 65.1 35 88.6
Gohir.D12G101700 Gossypium hirsutum HOM05D002320 ORTHO05D002428 9.1e-09 64.7 33 87.9
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 9.1e-09 64.7 33 87.9
Solyc10g061960.2 Solanum lycopersicum HOM05D002320 ORTHO05D002428 9.1e-09 64.7 179 76.5
AL2G37860 Arabidopsis lyrata HOM05D003354 ORTHO05D003786 1.2e-08 64.3 38 60.5
FAN01G0449 Fragaria x ananassa HOM05D002320 ORTHO05D002428 1.2e-08 64.3 44 72.7
Medtr7g451440 Medicago truncatula HOM05D002320 ORTHO05D002428 1.2e-08 64.3 179 76.5
Nitab4.5_0006060g0020 Nicotiana tabacum HOM05D002320 ORTHO05D002428 1.2e-08 64.3 179 77.1
PGR042G2252 Punica granatum HOM05D002320 ORTHO05D002428 1.2e-08 64.3 179 77.7
SalBow5G1443 Salvia bowleyana HOM05D002320 ORTHO05D002428 1.2e-08 64.3 179 77.7
FvH4_7g09080 Fragaria vesca HOM05D002320 ORTHO05D002428 1.6e-08 63.9 44 70.5
MSTRG.20668 Avicennia marina HOM05D002320 ORTHO05D002428 2.0e-08 63.5 179 78.2
Manes.05G057300 Manihot esculenta HOM05D002320 ORTHO05D002428 2.0e-08 63.5 31 96.8
Medtr8g007500 Medicago truncatula HOM05D002320 ORTHO05D002428 2.6e-08 63.2 179 74.9
Peaxi162Scf00793g00346 Petunia axillaris HOM05D002320 ORTHO05D002428 2.6e-08 63.2 173 78.6
Hund17117 Selenicereus undatus HOM05D002320 ORTHO05D002428 2.6e-08 63.2 179 77.7
unitig_0.g1334 Utricularia gibba HOM05D002320 ORTHO05D002428 2.6e-08 63.2 27 96.3
EL10Ac1g00731 Beta vulgaris HOM05D002320 ORTHO05D002428 3.5e-08 62.8 179 78.2
BcaC08g47598 Brassica carinata HOM05D003354 ORTHO05D003786 3.5e-08 62.8 39 59.0
BolC6t40185H Brassica oleracea HOM05D003354 ORTHO05D003786 3.5e-08 62.8 39 59.0
BolC6t40188H Brassica oleracea HOM05D003354 ORTHO05D003786 3.5e-08 62.8 39 59.0
CARHR247980 Cardamine hirsuta HOM05D002320 ORTHO05D002428 4.5e-08 62.4 33 87.9
Lj3g0021219 Lotus japonicus HOM05D002320 ORTHO05D002428 4.5e-08 62.4 33 84.8
Lalb_Chr03g0040921 Lupinus albus HOM05D002320 ORTHO05D002428 4.5e-08 62.4 33 81.8
MD02G1221500 Malus domestica HOM05D002320 ORTHO05D002428 4.5e-08 62.4 44 68.2
Atru.chr5.85 Acer truncatum HOM05D002320 ORTHO05D002428 5.9e-08 62.0 33 84.8
arahy.Tifrunner.gnm1.ann1.QT0HNX Arachis hypogaea HOM05D002320 ORTHO05D002428 5.9e-08 62.0 33 81.8
Carub.0006s3724 Capsella rubella HOM05D002320 ORTHO05D002428 5.9e-08 62.0 33 84.8
Cpa.g.sc52.80 Carica papaya HOM05D002320 ORTHO05D002428 5.9e-08 62.0 33 87.9
HanXRQChr11g0344021 Helianthus annuus HOM05D002320 ORTHO05D002428 5.9e-08 62.0 33 81.8
Lj1g0016906 Lotus japonicus HOM05D002320 ORTHO05D002428 5.9e-08 62.0 33 81.8
Rhsim01G0141900 Rhododendron simsii HOM05D002320 ORTHO05D002428 5.9e-08 62.0 35 85.7
Sabra14G0037100 Salix brachista HOM05D002320 ORTHO05D002428 5.9e-08 62.0 31 93.5
Sabra14G0039200 Salix brachista HOM05D002320 ORTHO05D002428 5.9e-08 62.0 31 93.5
Migut.B01501 Erythranthe guttata HOM05D002320 ORTHO05D002428 7.7e-08 61.6 179 75.4
TPR.G32137 Trifolium pratense HOM05D002320 ORTHO05D002428 7.7e-08 61.6 33 81.8
Nitab4.5_0000293g0110 Nicotiana tabacum HOM05D002320 ORTHO05D002428 1.0e-07 61.2 33 78.8
Psat4g222720 Pisum sativum HOM05D002320 ORTHO05D002428 1.0e-07 61.2 33 78.8
QL09p040324 Quercus lobata HOM05D002320 ORTHO05D002428 1.0e-07 61.2 31 90.3
HanXRQChr01g0015531 Helianthus annuus HOM05D002320 ORTHO05D002428 1.3e-07 60.8 33 78.8
Phvul.008G138500 Phaseolus vulgaris HOM05D002320 ORTHO05D002428 1.3e-07 60.8 33 81.8
QL05p013783 Quercus lobata HOM05D002320 ORTHO05D002428 1.3e-07 60.8 31 87.1
SGA_v2.0_scaffold52G19259 Striga asiatica HOM05D002320 ORTHO05D002428 1.3e-07 60.8 33 84.8
Dinv01442 Davidia involucrata HOM05D002320 ORTHO05D002428 1.7e-07 60.5 48 52.1
Glyma.01G094800 Glycine max HOM05D002320 ORTHO05D002428 2.2e-07 60.1 33 81.8
Glyma.08G340800 Glycine max HOM05D002320 ORTHO05D002428 2.2e-07 60.1 33 78.8
Lj7C550G3 Lonicera japonica HOM05D002320 ORTHO05D002428 2.2e-07 60.1 31 90.3
FAN10G2100 Fragaria x ananassa HOM05D002320 ORTHO05D002428 3.8e-07 59.3 42 71.4
Oeu037425.1 Olea europaea HOM05D002320 ORTHO05D002428 3.8e-07 59.3 25 96.0
Oeu037426.1 Olea europaea HOM05D002320 ORTHO05D002428 3.8e-07 59.3 25 96.0
Aa31LG9G15160 Aethionema arabicum HOM05D002320 ORTHO05D002428 5.0e-07 58.9 28 78.6
Ciclev10023356m.g Citrus clementina HOM05D002320 ORTHO05D002428 5.0e-07 58.9 31 80.6
Actinidia12636 Actinidia chinensis HOM05D002320 ORTHO05D002428 6.5e-07 58.5 44 65.9
Dinv44036 Davidia involucrata HOM05D002320 ORTHO05D002428 8.5e-07 58.2 31 87.1
ECA240G3835 Erigeron canadensis HOM05D002320 ORTHO05D002428 1.1e-06 57.8 27 85.2
Dinv43597 Davidia involucrata HOM05D002320 ORTHO05D002428 1.5e-06 57.4 24 95.8
FAN06G0692 Fragaria x ananassa HOM05D002320 ORTHO05D002428 1.5e-06 57.4 42 69.0
Gohir.A08G140100 Gossypium hirsutum HOM05D002320 ORTHO05D002428 1.5e-06 57.4 24 95.8
Gohir.D08G161100 Gossypium hirsutum HOM05D002320 ORTHO05D002428 1.5e-06 57.4 24 95.8
DCAR_005591 Daucus carota HOM05D002320 ORTHO05D002428 1.9e-06 57.0 26 84.6
Gohir.D11G297300 Gossypium hirsutum HOM05D002320 ORTHO05D002428 2.5e-06 56.6 33 78.8
Gorai.007G322000 Gossypium raimondii HOM05D002320 ORTHO05D002428 2.5e-06 56.6 33 78.8
HanXRQChr16g0520991 Helianthus annuus HOM05D002320 ORTHO05D002428 2.5e-06 56.6 34 70.6
Nn1g00726 Nelumbo nucifera HOM05D002320 ORTHO05D002428 2.5e-06 56.6 33 84.8
MBI06_g44270_MAGBIO Magnolia biondii HOM05D003354 ORTHO05D003786 3.2e-06 56.2 27 74.1
SEGI_10019 Sequoiadendron giganteum HOM05D002320 ORTHO05D002428 3.2e-06 56.2 24 91.7
Gohir.A12G098500 Gossypium hirsutum HOM05D002320 ORTHO05D002428 4.2e-06 55.8 24 91.7
Psat4g077360 Pisum sativum HOM05D002320 ORTHO05D002428 4.2e-06 55.8 24 91.7
SGA_v2.0_scaffold340G49341 Striga asiatica HOM05D002320 ORTHO05D002428 4.2e-06 55.8 24 91.7
GSVIVG01013279001 Vitis vinifera HOM05D002320 ORTHO05D002428 4.2e-06 55.8 179 75.4
Actinidia30945 Actinidia chinensis HOM05D002320 ORTHO05D002428 5.5e-06 55.5 31 83.9
Ca_22024_v3 Cicer arietinum L. HOM05D002320 ORTHO05D002428 5.5e-06 55.5 24 87.5
ECA234G4533 Erigeron canadensis HOM05D002320 ORTHO05D002428 5.5e-06 55.5 33 72.7
Aqoxy3G02604 Aquilegia oxysepala HOM05D002320 ORTHO05D002428 9.4e-06 54.7 33 78.8
COL.COLO4_06695 Corchorus olitorius HOM05D002320 ORTHO05D002428 9.4e-06 54.7 24 87.5
Gohir.D09G192000 Gossypium hirsutum HOM05D002320 ORTHO05D002428 9.4e-06 54.7 24 87.5
Oeu012025.1 Olea europaea HOM05D002320 ORTHO05D002428 9.4e-06 54.7 31 83.9
QL12p008422 Quercus lobata HOM05D002320 ORTHO05D002428 9.4e-06 54.7 25 84.0
SMO203G0279 Selaginella moellendorffii HOM05D002320 ORTHO05D002428 9.4e-06 54.7 24 91.7


User provided reference genes

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