Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 8.3e-163 577.0 300 100.0
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 6.9e-109 397.9 252 79.8
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 2.2e-107 392.9 254 79.1
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 2.9e-107 392.5 246 81.7
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 2.5e-106 389.4 250 79.6
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 1.0e-104 384.0 278 70.5
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 2.3e-104 382.9 250 77.2
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 2.5e-103 379.4 291 68.7
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 3.4e-100 369.0 252 74.2
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 7.7e-100 367.9 252 72.6
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 3.8e-99 365.5 249 74.7
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 8.5e-99 364.4 252 73.8
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 1.4e-98 363.6 249 73.9
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 1.4e-98 363.6 247 72.5
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 1.9e-98 363.2 246 73.2
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.9e-98 363.2 246 73.2
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 1.9e-98 363.2 247 73.7
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 2.5e-98 362.8 253 71.5
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 4.2e-98 362.1 247 73.7
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 1.6e-97 360.1 246 73.2
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 6.1e-97 358.2 256 71.5
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 1.4e-96 357.1 250 71.2
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 2.3e-96 356.3 247 73.7
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 2.3e-96 356.3 248 72.6
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 4.3e-95 352.1 245 72.2
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 4.3e-95 352.1 246 71.5
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 5.7e-95 351.7 250 71.6
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 6.3e-94 348.2 259 70.3
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 8.2e-94 347.8 246 72.0
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 1.1e-93 347.4 246 72.0
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 1.1e-93 347.4 245 71.8
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 1.1e-93 347.4 248 71.0
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 1.8e-93 346.7 245 71.0
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 4.1e-93 345.5 250 70.0
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 5.3e-93 345.1 249 71.5
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 6.9e-93 344.7 250 70.4
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 9.1e-93 344.4 248 69.8
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 9.1e-93 344.4 252 68.7
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 2.6e-92 342.8 249 71.1
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 4.5e-92 342.0 250 68.4
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 5.9e-92 341.7 246 71.5
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 7.7e-92 341.3 252 68.3
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 1.0e-91 340.9 300 62.3
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 1.3e-91 340.5 252 69.4
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 2.9e-91 339.3 249 68.3
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 1.1e-90 337.4 247 68.8
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 7.2e-90 334.7 248 69.4
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 1.2e-89 334.0 247 69.2
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 3.6e-89 332.4 218 75.7
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 6.1e-89 331.6 247 68.4
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 1.4e-88 330.5 249 67.5
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 1.4e-88 330.5 249 67.5
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 2.3e-88 329.7 248 66.9
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 5.1e-88 328.6 245 69.8
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 1.5e-87 327.0 264 62.9
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 2.0e-87 326.6 247 67.6
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 9.7e-87 324.3 250 65.2
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 2.8e-86 322.8 302 59.3
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 1.4e-85 320.5 252 67.1
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 3.1e-85 319.3 249 65.5
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 9.1e-85 317.8 256 64.8
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 2.0e-84 316.6 282 59.2
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 2.6e-84 316.2 256 64.1
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 4.5e-84 315.5 248 64.5
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 2.5e-82 309.7 240 65.8
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 3.2e-82 309.3 238 65.5
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 9.4e-82 307.8 255 64.7
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 9.4e-82 307.8 246 63.4
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 2.7e-81 306.2 254 65.0
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 4.0e-80 302.4 253 61.3
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 4.8e-78 295.4 249 61.0
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 8.2e-78 294.7 294 53.7
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 2.4e-77 293.1 254 58.3
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 3.1e-77 292.7 254 58.7
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 9.1e-77 291.2 250 61.6
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 1.6e-76 290.4 251 58.6
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 4.5e-76 288.9 252 62.7
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 5.9e-76 288.5 254 59.1
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 5.9e-76 288.5 254 59.1
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 6.5e-75 285.0 253 58.9
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 1.1e-74 284.3 249 60.2
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 1.5e-74 283.9 276 55.1
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 1.5e-74 283.9 276 55.1
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 2.1e-73 280.0 254 57.1
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 1.4e-72 277.3 219 64.4
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 1.2e-71 274.2 219 63.9
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 3.4e-71 272.7 252 57.1
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 8.3e-70 268.1 170 79.4
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 1.1e-69 267.7 203 66.0
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 3.2e-66 256.1 309 50.2
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 4.2e-66 255.8 220 60.0
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 5.2e-64 248.8 249 54.2
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 2.0e-63 246.9 209 66.5
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 2.0e-63 246.9 250 51.2
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 7.5e-63 245.0 193 64.8
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 5.4e-61 238.8 201 61.2
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 8.6e-59 231.5 167 67.1
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 1.1e-58 231.1 196 58.7
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 1.5e-50 204.1 191 57.6
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 6.4e-46 188.7 230 43.5
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 4.3e-42 176.0 131 67.9
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 4.4e-39 166.0 143 56.6
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 2.6e-31 140.2 128 61.7
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 3.5e-28 129.8 136 52.2
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 7.1e-21 105.5 198 35.9
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 1.4e-16 91.3 283 31.1
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 9.0e-16 88.6 108 45.4
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 1.2e-15 88.2 235 31.9
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 6.4e-14 82.4 55 72.7
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 7.1e-13 79.0 55 69.1
MD03G1169200 Malus domestica HOM05D006655 ORTHO05D007986 1.8e-08 64.3 279 25.4
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 2.4e-08 63.9 211 29.4
Mapoly0030s0154 Marchantia polymorpha HOM05D006979 ORTHO05D008857 3.1e-08 63.5 61 45.9
RcHm_v2.0_Chr5g0050831 Rosa chinensis HOM05D006655 ORTHO05D007986 3.1e-08 63.5 247 25.9
Hund21967 Selenicereus undatus HOM05D006655 ORTHO05D007986 3.1e-08 63.5 272 26.5
EL10Ac4g10174 Beta vulgaris HOM05D006655 ORTHO05D007986 4.0e-08 63.2 259 25.9
Phvul.010G032900 Phaseolus vulgaris HOM05D006655 ORTHO05D007986 4.0e-08 63.2 251 26.7
arahy.Tifrunner.gnm1.ann1.760I9C Arachis hypogaea HOM05D006655 ORTHO05D007986 5.3e-08 62.8 247 26.3
ECA248G0748 Erigeron canadensis HOM05D006655 ORTHO05D007986 5.3e-08 62.8 257 26.8
Thhalv10025684m.g Eutrema salsugineum HOM05D006655 ORTHO05D007986 5.3e-08 62.8 253 26.1
VMungo0331G0819 Vigna mungo HOM05D006655 ORTHO05D007986 1.2e-07 61.6 247 26.3
Zm00001eb394530 Zea mays HOM05D006655 ORTHO05D007986 1.2e-07 61.6 247 25.9
AUR62000173 Chenopodium quinoa HOM05D006655 ORTHO05D007986 1.5e-07 61.2 253 26.5
GSVIVG01037232001 Vitis vinifera HOM05D006655 ORTHO05D007986 1.5e-07 61.2 281 24.6
Cc01_g05880 Coffea canephora HOM05D006655 ORTHO05D007986 2.0e-07 60.8 288 25.3
MBI13_g19379_MAGBIO Magnolia biondii HOM05D006655 ORTHO05D007986 2.0e-07 60.8 247 26.7
Carub.0007s0904 Capsella rubella HOM05D006655 ORTHO05D007986 2.6e-07 60.5 250 24.8
AUR62039838 Chenopodium quinoa HOM05D006655 ORTHO05D007986 2.6e-07 60.5 253 28.1
Lsat_1_v5_gn_1_77640 Lactuca sativa HOM05D006655 ORTHO05D007986 2.6e-07 60.5 270 25.9
Cpa.g.sc84.14 Carica papaya HOM05D006655 ORTHO05D007986 3.4e-07 60.1 269 24.5
Actinidia06937 Actinidia chinensis HOM05D006655 ORTHO05D007986 4.5e-07 59.7 278 24.8
MSTRG.18452 Avicennia marina HOM05D006655 ORTHO05D007986 4.5e-07 59.7 267 25.1
Haze_23196 Corylus avellana HOM05D006655 ORTHO05D007986 4.5e-07 59.7 247 26.3
Glyma.16G082200 Glycine max HOM05D006655 ORTHO05D007986 4.5e-07 59.7 268 25.4
HanXRQChr01g0023951 Helianthus annuus HOM05D006655 ORTHO05D007986 4.5e-07 59.7 267 25.1
C07p58710 Brassica napus HOM05D006655 ORTHO05D007986 5.8e-07 59.3 282 25.5
ClCG03G012910 Citrullus lanatus HOM05D006655 ORTHO05D007986 7.6e-07 58.9 279 25.1
Lj3g0004618 Lotus japonicus HOM05D006655 ORTHO05D007986 7.6e-07 58.9 277 25.3
CARHR239410 Cardamine hirsuta HOM05D006655 ORTHO05D007986 9.9e-07 58.5 276 25.4
AT4G31530 Arabidopsis thaliana HOM05D006655 ORTHO05D007986 1.3e-06 58.2 277 24.5
CiPaw.14G115600 Carya illinoinensis HOM05D006655 ORTHO05D007986 1.3e-06 58.2 279 25.1
MELO3C015152.2 Cucumis melo HOM05D006655 ORTHO05D007986 1.3e-06 58.2 279 24.4
Dinv36200 Davidia involucrata HOM05D006655 ORTHO05D007986 1.3e-06 58.2 275 24.0
BolC7t46320H Brassica oleracea HOM05D006655 ORTHO05D007986 1.7e-06 57.8 256 24.2
Ciclev10015876m.g Citrus clementina HOM05D006655 ORTHO05D007986 1.7e-06 57.8 277 25.6
QL01p017764 Quercus lobata HOM05D006655 ORTHO05D007986 1.7e-06 57.8 257 24.9
SGA_v2.0_scaffold8G04557 Striga asiatica HOM05D006655 ORTHO05D007986 1.7e-06 57.8 244 26.2
AL7G20510 Arabidopsis lyrata HOM05D006655 ORTHO05D007986 2.2e-06 57.4 277 24.2
Pp3c15_7750 Physcomitrium patens HOM05D005785 ORTHO05D007017 2.2e-06 57.4 227 25.6
BcaNung04132 Brassica carinata HOM05D006655 ORTHO05D007986 2.9e-06 57.0 275 24.7
DCAR_029978 Daucus carota HOM05D006655 ORTHO05D007986 2.9e-06 57.0 245 25.7
Cfa009833 Carpinus fangiana HOM05D006655 ORTHO05D007986 3.8e-06 56.6 279 24.7
Rhsim13G0216500 Rhododendron simsii HOM05D006655 ORTHO05D007986 3.8e-06 56.6 269 25.3
Pp3c5_8450 Physcomitrium patens HOM05D006655 ORTHO05D030199 6.4e-06 55.8 231 25.1
SEGI_01007 Sequoiadendron giganteum HOM05D006655 ORTHO05D007986 6.4e-06 55.8 248 25.4
PSO063G2886 Papaver somniferum HOM05D003730 ORTHO05D004458 8.4e-06 55.5 106 30.2


User provided reference genes

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