Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 5.0e-140 501.1 260 100.0
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 1.9e-62 243.4 221 62.0
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 4.2e-62 242.3 224 62.1
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 5.5e-62 241.9 220 60.9
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 4.6e-61 238.8 217 60.4
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 1.0e-60 237.7 220 60.9
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.0e-59 233.4 220 59.5
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 2.6e-59 233.0 214 61.2
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 4.4e-59 232.3 216 59.7
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 4.4e-59 232.3 220 59.1
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 5.7e-59 231.9 220 59.1
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.3e-58 230.7 215 61.9
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 1.3e-58 230.7 216 61.1
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.3e-58 230.7 217 60.4
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 1.3e-58 230.7 223 58.3
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.3e-58 230.7 220 58.6
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 2.2e-58 229.9 220 59.1
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 2.8e-58 229.6 220 59.1
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 2.8e-58 229.6 220 58.6
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 4.8e-58 228.8 216 59.7
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 6.3e-58 228.4 220 58.6
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.4e-57 227.3 225 57.8
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 1.8e-57 226.9 213 61.0
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 5.3e-57 225.3 223 56.1
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 9.1e-57 224.6 236 58.5
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 2.0e-56 223.4 211 60.2
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.4e-56 222.6 227 58.6
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 7.7e-56 221.5 220 57.3
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 1.0e-55 221.1 219 56.6
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 1.3e-55 220.7 228 61.0
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 1.3e-55 220.7 217 56.7
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 3.8e-55 219.2 215 58.6
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 5.0e-55 218.8 207 60.4
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 6.5e-55 218.4 220 57.3
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 6.5e-55 218.4 215 58.6
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 8.5e-55 218.0 220 55.5
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 1.1e-54 217.6 216 57.4
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 1.1e-54 217.6 227 57.7
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 1.1e-54 217.6 220 57.7
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 1.1e-54 217.6 214 57.0
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 1.4e-54 217.2 216 57.9
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 1.4e-54 217.2 222 55.4
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 1.4e-54 217.2 217 55.8
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 1.4e-54 217.2 215 56.3
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.5e-54 216.5 218 57.3
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 3.2e-54 216.1 220 56.4
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 4.2e-54 215.7 233 51.9
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 4.2e-54 215.7 220 54.5
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 5.5e-54 215.3 214 56.1
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 1.2e-53 214.2 215 55.3
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.2e-53 214.2 223 53.8
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.2e-53 214.2 220 57.3
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.6e-53 213.8 215 55.3
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 1.6e-53 213.8 216 54.2
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.1e-53 213.4 220 58.2
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.7e-53 213.0 217 54.4
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 2.7e-53 213.0 223 54.3
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 3.6e-53 212.6 220 56.4
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 3.6e-53 212.6 218 56.4
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 4.7e-53 212.2 215 54.9
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 4.7e-53 212.2 215 55.8
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 4.7e-53 212.2 224 53.6
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 1.0e-52 211.1 206 56.8
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 1.4e-52 210.7 214 55.6
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 1.8e-52 210.3 213 54.5
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 8.8e-52 208.0 225 53.3
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 8.8e-52 208.0 217 54.4
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.5e-51 207.2 217 52.5
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 1.5e-51 207.2 206 55.8
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 2.0e-51 206.8 215 53.5
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 2.0e-51 206.8 206 56.3
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 2.0e-51 206.8 216 57.4
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 2.6e-51 206.5 214 57.0
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 5.7e-51 205.3 216 56.9
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 7.4e-51 204.9 220 51.8
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 1.3e-50 204.1 215 54.9
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 1.7e-50 203.8 210 54.8
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 1.7e-50 203.8 220 55.0
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 1.7e-50 203.8 215 55.8
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 2.2e-50 203.4 206 55.8
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 2.2e-50 203.4 215 53.0
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 2.8e-50 203.0 224 52.2
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 2.8e-50 203.0 221 52.0
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 6.3e-50 201.8 221 52.9
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 6.3e-50 201.8 224 53.6
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 8.2e-50 201.4 207 55.6
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 8.2e-50 201.4 209 56.0
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 8.2e-50 201.4 223 52.5
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 1.1e-49 201.1 214 56.1
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 1.1e-49 201.1 215 56.7
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 1.4e-49 200.7 214 53.7
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 1.8e-49 200.3 214 53.3
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.4e-49 199.9 217 51.2
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 2.4e-49 199.9 214 53.3
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 2.4e-49 199.9 214 53.3
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 4.1e-49 199.1 220 53.6
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 4.1e-49 199.1 216 52.8
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 7.0e-49 198.4 214 54.2
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 7.0e-49 198.4 216 56.0
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.6e-48 197.2 217 50.2
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 4.5e-48 195.7 220 50.9
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 1.0e-47 194.5 221 51.1
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 1.3e-47 194.1 229 50.2
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 1.7e-47 193.7 224 50.9
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 4.2e-46 189.1 245 47.8
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.2e-43 181.0 211 52.6
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 3.3e-43 179.5 228 47.4
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 4.4e-43 179.1 240 47.9
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 9.7e-43 177.9 304 40.8
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.8e-42 176.4 212 46.7
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 9.1e-41 171.4 314 38.5
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.2e-39 166.8 212 46.7
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 1.1e-38 164.5 215 48.8
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 4.2e-38 162.5 219 48.9
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 4.2e-38 162.5 106 72.6
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 6.8e-36 155.2 224 46.4
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 3.4e-35 152.9 106 71.7
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 5.7e-35 152.1 216 44.0
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 7.5e-35 151.8 223 43.0
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 2.2e-34 150.2 220 43.2
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 4.8e-34 149.1 164 56.1
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 4.1e-33 146.0 101 67.3
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 9.1e-33 144.8 96 75.0
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 7.7e-32 141.7 94 71.3
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 7.2e-30 135.2 223 40.4
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 1.8e-28 130.6 255 36.9
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 6.8e-28 128.6 211 40.3
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 5.7e-27 125.6 155 52.9
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.8e-26 123.2 306 34.0
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 4.1e-25 119.4 224 41.1
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 8.0e-21 105.1 66 69.7
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.5e-19 100.9 58 75.9
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.5e-19 100.9 58 75.9
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 1.7e-18 97.4 171 40.4
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 8.3e-18 95.1 198 34.8
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 7.8e-16 88.6 51 78.4
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 3.0e-15 86.7 46 93.5
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 5.6e-14 82.4 212 30.7
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 1.4e-12 77.8 237 31.6
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 1.4e-12 77.8 240 31.7
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 1.9e-09 67.4 46 65.2
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.2e-08 64.7 108 39.8
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 2.1e-08 63.9 48 64.6
TAR497G0002 Trochodendron aralioides HOM05D005017 ORTHO05D006044 5.6e-06 55.8 35 74.3


User provided reference genes

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