Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 4.4e-242 840.9 423 100.0
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 2.0e-122 443.4 448 58.5
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 8.2e-108 394.8 443 56.7
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 8.2e-108 394.8 443 56.7
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 4.4e-101 372.5 450 52.9
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 2.4e-99 366.7 449 51.7
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 1.5e-96 357.5 458 49.8
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 3.3e-96 356.3 455 52.3
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 5.2e-94 349.0 457 49.9
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 6.8e-94 348.6 447 49.4
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 1.3e-89 334.3 449 48.1
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 6.6e-89 332.0 458 47.4
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 1.2e-85 321.2 449 47.9
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 5.8e-85 318.9 450 47.6
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 3.2e-83 313.2 468 43.4
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 2.0e-82 310.5 453 46.1
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 1.0e-81 308.1 384 50.0
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 3.9e-81 306.2 398 49.0
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 6.6e-81 305.4 455 43.7
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 1.9e-80 303.9 442 45.7
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 7.3e-80 302.0 458 45.2
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 2.8e-79 300.1 454 45.2
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 1.2e-77 294.7 459 44.4
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 3.4e-77 293.1 445 46.7
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 2.2e-76 290.4 453 43.9
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 2.9e-76 290.0 440 45.2
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 8.3e-76 288.5 440 44.8
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 4.1e-75 286.2 440 44.5
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 4.6e-74 282.7 440 43.6
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 4.6e-74 282.7 454 43.8
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 6.0e-74 282.3 440 43.0
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 3.0e-73 280.0 453 43.9
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 6.2e-71 272.3 465 42.2
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 6.8e-70 268.9 454 43.2
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 3.4e-69 266.5 400 43.5
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 4.4e-69 266.2 436 44.0
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 5.8e-69 265.8 457 42.5
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 1.7e-68 264.2 404 42.8
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 8.3e-68 261.9 442 40.5
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 1.1e-67 261.5 456 41.7
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 1.4e-67 261.2 467 42.0
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 2.4e-67 260.4 472 40.3
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 2.4e-67 260.4 479 40.1
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 3.5e-66 256.5 429 42.2
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 4.6e-66 256.1 447 40.7
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 3.9e-65 253.1 470 40.9
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 2.1e-63 247.3 470 39.1
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 2.1e-63 247.3 417 41.0
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 3.6e-63 246.5 435 38.9
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 4.7e-63 246.1 455 39.3
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 1.8e-62 244.2 431 40.1
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 5.2e-62 242.7 364 43.1
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 2.0e-61 240.7 413 43.8
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 9.9e-61 238.4 436 41.7
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 9.9e-61 238.4 438 42.9
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 1.3e-60 238.0 484 37.4
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 1.3e-60 238.0 444 40.5
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 1.7e-60 237.7 480 37.1
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 2.9e-60 236.9 413 43.6
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 8.4e-60 235.3 403 42.4
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 2.4e-59 233.8 438 42.5
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 3.2e-59 233.4 444 39.9
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 5.4e-59 232.6 419 38.7
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 4.6e-58 229.6 451 36.8
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 2.1e-55 220.7 433 36.7
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 6.2e-55 219.2 431 39.4
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 8.1e-55 218.8 439 37.8
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 1.1e-54 218.4 395 38.5
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 3.1e-54 216.9 423 36.9
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 6.9e-54 215.7 399 38.8
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 6.9e-54 215.7 306 48.7
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 9.0e-54 215.3 303 49.2
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.2e-52 210.7 423 36.6
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 2.9e-52 210.3 423 36.9
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 4.9e-52 209.5 448 35.9
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 2.4e-51 207.2 391 39.1
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 4.2e-51 206.5 408 35.5
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 7.1e-51 205.7 427 35.8
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 9.3e-51 205.3 442 38.5
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 9.3e-51 205.3 417 38.1
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 9.3e-51 205.3 417 38.1
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 1.6e-50 204.5 383 38.1
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 2.7e-50 203.8 408 35.0
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 6.6e-49 199.1 340 42.9
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 1.5e-48 198.0 298 43.0
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 9.6e-48 195.3 394 36.0
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 2.1e-47 194.1 455 36.3
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 3.6e-47 193.4 402 36.6
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 2.4e-46 190.7 453 35.1
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 7.6e-45 185.7 413 36.1
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 2.9e-44 183.7 401 36.4
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 1.9e-43 181.0 402 34.6
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 3.2e-43 180.3 404 34.4
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 4.2e-43 179.9 406 36.2
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 6.0e-42 176.0 376 34.0
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 7.9e-42 175.6 381 36.2
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 4.8e-39 166.4 378 34.1
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 4.8e-39 166.4 378 34.1
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 4.8e-39 166.4 378 34.1
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 1.8e-38 164.5 385 35.6
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 2.4e-38 164.1 386 34.5
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 1.5e-37 161.4 393 34.6
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 2.2e-36 157.5 414 32.6
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 4.2e-35 153.3 429 32.9
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 1.7e-28 131.3 190 46.3
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 1.0e-25 122.1 340 32.1
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 1.1e-24 118.6 218 38.1
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 2.5e-19 100.9 276 33.3
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 3.6e-18 97.1 161 41.6
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 3.6e-18 97.1 169 36.7
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 6.9e-14 82.8 166 34.9
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 4.2e-11 73.6 239 27.6
C03p36010 Brassica napus HOM05D006741 ORTHO05D008434 6.7e-09 66.2 57 64.9
BolC3t15911H Brassica oleracea HOM05D006741 ORTHO05D008434 6.7e-09 66.2 57 64.9
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.1e-08 65.5 71 50.7
ECA234G0697 Erigeron canadensis HOM05D006741 ORTHO05D008434 4.4e-08 63.5 132 34.8
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.1e-06 58.9 114 35.1
Dinv11548 Davidia involucrata HOM05D065926 ORTHO05D008434 3.1e-06 57.4 68 51.5


User provided reference genes

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