Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A488T61 Lonicera japonica HOM05D006645 ORTHO05D008129 3.5e-86 321.6 165 100.0
Sabra15G0128400 Salix brachista HOM05D006645 ORTHO05D008129 8.4e-40 167.5 166 54.2
Lsat_1_v5_gn_4_84301 Lactuca sativa HOM05D006645 ORTHO05D008129 1.1e-39 167.2 168 57.1
Nn4g22122 Nelumbo nucifera HOM05D006645 ORTHO05D008129 2.4e-39 166.0 170 58.8
Potri.015G108100 Populus trichocarpa HOM05D006645 ORTHO05D008129 3.2e-39 165.6 168 53.6
Sabra15G0130800 Salix brachista HOM05D006645 ORTHO05D008129 5.4e-39 164.9 165 53.3
Dinv13711 Davidia involucrata HOM05D006645 ORTHO05D008129 7.8e-38 161.0 161 59.0
TAR622G0574 Trochodendron aralioides HOM05D006645 ORTHO05D008129 2.3e-37 159.5 168 58.3
Manes.06G127300 Manihot esculenta HOM05D006645 ORTHO05D008129 3.0e-37 159.1 168 53.6
vmacro19114 Vaccinium macrocarpon HOM05D006645 ORTHO05D008129 3.9e-37 158.7 180 53.9
vmacro19194 Vaccinium macrocarpon HOM05D006645 ORTHO05D008129 3.9e-37 158.7 180 53.9
CiPaw.12G000500 Carya illinoinensis HOM05D006645 ORTHO05D008129 5.1e-37 158.3 165 55.2
Ca_10875_v3 Cicer arietinum L. HOM05D006645 ORTHO05D008129 5.1e-37 158.3 175 53.1
Rhsim08G0198600 Rhododendron simsii HOM05D006645 ORTHO05D008129 5.1e-37 158.3 168 55.4
TAR371G0070 Trochodendron aralioides HOM05D006645 ORTHO05D008129 5.1e-37 158.3 168 56.0
Cc04_g05780 Coffea canephora HOM05D006645 ORTHO05D008129 6.6e-37 157.9 168 56.5
Cpa.g.sc2215.2 Carica papaya HOM05D006645 ORTHO05D008129 1.5e-36 156.8 166 56.0
DCAR_016335 Daucus carota HOM05D006645 ORTHO05D008129 1.5e-36 156.8 106 72.6
MD06G1129100 Malus domestica HOM05D006645 ORTHO05D008129 1.5e-36 156.8 167 53.9
Lalb_Chr08g0237591 Lupinus albus HOM05D006645 ORTHO05D008129 3.3e-36 155.6 169 53.8
TWI14G0928 Tripterygium wilfordii HOM05D006645 ORTHO05D008129 3.3e-36 155.6 169 53.3
MD14G1146000 Malus domestica HOM05D006645 ORTHO05D008129 2.8e-35 152.5 167 51.5
CSS0045487 Camellia sinensis var. sinensis HOM05D006645 ORTHO05D008129 3.6e-35 152.1 163 55.2
CSS0048618 Camellia sinensis var. sinensis HOM05D006645 ORTHO05D008129 3.6e-35 152.1 163 55.2
Duzib205G0637 Durio zibethinus HOM05D006645 ORTHO05D008129 6.2e-35 151.4 168 53.6
CDE05G3351 Ceratophyllum demersum HOM05D006645 ORTHO05D008129 8.1e-35 151.0 169 53.3
FAN13G1824 Fragaria x ananassa HOM05D006645 ORTHO05D008129 8.1e-35 151.0 168 55.4
Prupe.5G140400 Prunus persica HOM05D006645 ORTHO05D008129 8.1e-35 151.0 169 52.7
Eucgr.K02190 Eucalyptus grandis HOM05D006645 ORTHO05D008129 1.1e-34 150.6 155 50.3
HanXRQChr09g0273781 Helianthus annuus HOM05D006645 ORTHO05D008129 1.1e-34 150.6 168 55.4
Hma1.2p1_0452F.1_g155930 Hydrangea macrophylla HOM05D006645 ORTHO05D008129 1.1e-34 150.6 162 53.1
ECA232G4473 Erigeron canadensis HOM05D000001 ORTHO05D001247 1.4e-34 150.2 113 66.4
Sc22g0003260 Simmondsia chinensis HOM05D006645 ORTHO05D008129 1.8e-34 149.8 168 53.0
Gohir.D12G196500 Gossypium hirsutum HOM05D006645 ORTHO05D008129 2.4e-34 149.4 169 54.4
Peaxi162Scf00314g00728 Petunia axillaris HOM05D006645 ORTHO05D008129 2.4e-34 149.4 166 51.8
Thecc.03G141700 Theobroma cacao HOM05D006645 ORTHO05D008129 2.4e-34 149.4 167 53.3
Gohir.A12G194100 Gossypium hirsutum HOM05D006645 ORTHO05D008129 3.1e-34 149.1 169 54.4
RcHm_v2.0_Chr7g0188541 Rosa chinensis HOM05D006645 ORTHO05D008129 5.2e-34 148.3 166 54.8
MSTRG.22813 Avicennia marina HOM05D006645 ORTHO05D008129 6.9e-34 147.9 167 54.5
Psat5g055480 Pisum sativum HOM05D006645 ORTHO05D008129 6.9e-34 147.9 169 53.8
CDE05G2456 Ceratophyllum demersum HOM05D006645 ORTHO05D008129 8.9e-34 147.5 169 52.7
Ciclev10032925m.g Citrus clementina HOM05D006645 ORTHO05D008129 8.9e-34 147.5 170 53.5
COL.COLO4_37268 Corchorus olitorius HOM05D006645 ORTHO05D008129 8.9e-34 147.5 168 53.0
SGA_v2.0_scaffold37G14674 Striga asiatica HOM05D006645 ORTHO05D008129 8.9e-34 147.5 111 63.1
arahy.Tifrunner.gnm1.ann1.D72E2J Arachis hypogaea HOM05D006645 ORTHO05D008129 1.2e-33 147.1 113 62.8
THA.LOC104811555 Tarenaya hassleriana HOM05D006645 ORTHO05D008129 1.2e-33 147.1 170 54.1
Zm00001eb113350 Zea mays HOM05D006645 ORTHO05D008129 1.2e-33 147.1 104 67.3
CsaV3_1G000140 Cucumis sativus L. HOM05D006645 ORTHO05D008129 1.5e-33 146.7 145 56.6
Gorai.008G211100 Gossypium raimondii HOM05D006645 ORTHO05D008129 1.5e-33 146.7 169 53.8
arahy.Tifrunner.gnm1.ann1.1BW3L6 Arachis hypogaea HOM05D006645 ORTHO05D008129 2.0e-33 146.4 113 62.8
CAN.G1008.52 Capsicum annuum HOM05D006645 ORTHO05D008129 2.6e-33 146.0 164 51.8
Oeu013667.1 Olea europaea HOM05D006645 ORTHO05D008129 2.6e-33 146.0 156 55.1
PSO017G3202 Papaver somniferum HOM05D006645 ORTHO05D008129 2.6e-33 146.0 173 53.8
PSO478G4148 Papaver somniferum HOM05D006645 ORTHO05D008129 2.6e-33 146.0 173 53.2
Solyc03g118130.3 Solanum lycopersicum HOM05D006645 ORTHO05D008129 2.6e-33 146.0 164 51.2
Sopen03g037030 Solanum pennellii HOM05D006645 ORTHO05D008129 3.4e-33 145.6 165 50.9
Duzib084G1311 Durio zibethinus HOM05D006645 ORTHO05D008129 4.4e-33 145.2 166 52.4
Thhalv10014834m.g Eutrema salsugineum HOM05D006645 ORTHO05D008129 4.4e-33 145.2 104 67.3
A03p16420 Brassica napus HOM05D006645 ORTHO05D008129 5.8e-33 144.8 160 53.1
BraA03t10932Z Brassica rapa HOM05D006645 ORTHO05D008129 5.8e-33 144.8 160 53.1
Dinv23234 Davidia involucrata HOM05D006645 ORTHO05D008129 5.8e-33 144.8 100 70.0
ATR0582G272 Amborella trichopoda HOM05D006645 ORTHO05D008129 7.6e-33 144.4 168 52.4
FvH4_5g09700 Fragaria vesca HOM05D006645 ORTHO05D008129 7.6e-33 144.4 166 53.0
PGSC0003DMG400014238 Solanum tuberosum HOM05D006645 ORTHO05D008129 7.6e-33 144.4 165 49.7
ClCG06G018300 Citrullus lanatus HOM05D006645 ORTHO05D008129 9.9e-33 144.1 116 63.8
Nitab4.5_0010893g0030 Nicotiana tabacum HOM05D006645 ORTHO05D008129 1.3e-32 143.7 161 52.2
PGR142G3652 Punica granatum HOM05D006645 ORTHO05D008129 1.7e-32 143.3 103 67.0
TWI39G0437 Tripterygium wilfordii HOM05D006645 ORTHO05D008129 2.2e-32 142.9 169 50.3
VMungo0251G1538 Vigna mungo HOM05D006645 ORTHO05D008129 2.2e-32 142.9 123 59.3
Aqoxy3G01868 Aquilegia oxysepala HOM05D006645 ORTHO05D008129 2.9e-32 142.5 171 52.0
BcaC01g06063 Brassica carinata HOM05D006645 ORTHO05D008129 2.9e-32 142.5 164 50.6
C03p19310 Brassica napus HOM05D006645 ORTHO05D008129 2.9e-32 142.5 164 50.6
AT5G51010 Arabidopsis thaliana HOM05D006645 ORTHO05D008129 4.9e-32 141.7 114 61.4
BcaC01g06113 Brassica carinata HOM05D006645 ORTHO05D008129 4.9e-32 141.7 104 65.4
BolC3t14317H Brassica oleracea HOM05D006645 ORTHO05D008129 4.9e-32 141.7 164 51.8
Carub.0008s1101 Capsella rubella HOM05D006645 ORTHO05D008129 4.9e-32 141.7 104 65.4
Glyma.04G202300 Glycine max HOM05D006645 ORTHO05D008129 6.4e-32 141.4 169 49.7
Nitab4.5_0000976g0110 Nicotiana tabacum HOM05D006645 ORTHO05D008129 6.4e-32 141.4 168 50.0
Aa31LG3G7470 Aethionema arabicum HOM05D006645 ORTHO05D008129 8.4e-32 141.0 142 54.9
CARHR257180 Cardamine hirsuta HOM05D006645 ORTHO05D008129 8.4e-32 141.0 104 64.4
AUR62032209 Chenopodium quinoa HOM05D006645 ORTHO05D008129 8.4e-32 141.0 172 50.0
Medtr3g098520 Medicago truncatula HOM05D006645 ORTHO05D008129 8.4e-32 141.0 168 49.4
Sp6g13160 Schrenkiella parvula HOM05D006645 ORTHO05D008129 1.1e-31 140.6 160 52.5
Migut.I00665 Erythranthe guttata HOM05D006645 ORTHO05D008129 1.4e-31 140.2 168 50.6
Ah.11g046980 Amaranthus hybridus HOM05D006645 ORTHO05D008129 1.9e-31 139.8 153 53.6
Phvul.002G280900 Phaseolus vulgaris HOM05D006645 ORTHO05D008129 1.9e-31 139.8 167 49.7
GSVIVG01008662001 Vitis vinifera HOM05D006645 ORTHO05D008129 1.9e-31 139.8 98 69.4
Glyma.05G199700 Glycine max HOM05D006645 ORTHO05D008129 2.4e-31 139.4 117 60.7
Atru.chr6.1936 Acer truncatum HOM05D006645 ORTHO05D008129 3.2e-31 139.0 169 50.9
Lj1g0000604 Lotus japonicus HOM05D006645 ORTHO05D008129 3.2e-31 139.0 167 50.3
AL8G25220 Arabidopsis lyrata HOM05D006645 ORTHO05D008129 4.2e-31 138.7 142 54.9
EL10Ac5g11273 Beta vulgaris HOM05D006645 ORTHO05D008129 5.4e-31 138.3 172 50.6
AUR62043377 Chenopodium quinoa HOM05D006645 ORTHO05D008129 7.1e-31 137.9 171 50.9
Haze_07089 Corylus avellana HOM05D006645 ORTHO05D008129 9.3e-31 137.5 193 47.2
Glyma.08G007200 Glycine max HOM05D006645 ORTHO05D008129 9.3e-31 137.5 172 48.3
SalBow7G0306 Salvia bowleyana HOM05D006645 ORTHO05D008129 1.2e-30 137.1 167 50.9
Lj4g0018315 Lotus japonicus HOM05D006645 ORTHO05D008129 2.1e-30 136.3 172 48.8
Os11g0528500 Oryza sativa ssp. japonica HOM05D006645 ORTHO05D008129 3.5e-30 135.6 108 62.0
arahy.Tifrunner.gnm1.ann1.FT61ID Arachis hypogaea HOM05D006645 ORTHO05D008129 4.6e-30 135.2 130 56.2
Sed0010334 Sechium edule HOM05D006645 ORTHO05D008129 4.6e-30 135.2 108 64.8
Actinidia18289 Actinidia chinensis HOM05D006645 ORTHO05D008129 1.3e-29 133.7 170 48.2
Hund10027 Selenicereus undatus HOM05D006645 ORTHO05D008129 1.7e-29 133.3 170 50.0
arahy.Tifrunner.gnm1.ann1.Z544U3 Arachis hypogaea HOM05D006645 ORTHO05D008129 5.1e-29 131.7 130 54.6
unitig_52.g17484 Utricularia gibba HOM05D006645 ORTHO05D008129 8.7e-29 131.0 103 55.3
Lj5C86G18 Lonicera japonica HOM05D006645 ORTHO05D008129 1.1e-28 130.6 138 55.8
Phvul.009G160600 Phaseolus vulgaris HOM05D006645 ORTHO05D008129 1.1e-28 130.6 169 47.3
MELO3C026168.2 Cucumis melo HOM05D006645 ORTHO05D008129 1.5e-25 120.2 113 57.5
SMO116G0387 Selaginella moellendorffii HOM05D006645 ORTHO05D008129 7.6e-25 117.9 154 43.5
Actinidia25512 Actinidia chinensis HOM05D006645 ORTHO05D008129 4.6e-22 108.6 80 63.8
Mapoly0188s0012 Marchantia polymorpha HOM05D006645 ORTHO05D008129 6.0e-22 108.2 174 39.7
Pp3c20_8260 Physcomitrium patens HOM05D006645 ORTHO05D008129 7.9e-22 107.8 107 48.6
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 5.6e-20 101.7 73 58.9
QL10p000304 Quercus lobata HOM05D006645 ORTHO05D008129 3.1e-18 95.9 292 31.5
SEGI_04043 Sequoiadendron giganteum HOM05D006645 ORTHO05D008129 5.5e-15 85.1 167 36.5
Glyma.17G183301 Glycine max HOM05D006645 ORTHO05D008129 3.1e-10 69.3 46 63.0
Potri.012G109700 Populus trichocarpa HOM05D006645 ORTHO05D008129 6.9e-10 68.2 94 43.6
Pp3c2_6110 Physcomitrium patens HOM05D006645 ORTHO05D008129 1.0e-08 64.3 83 38.6
MSTRG.26938 Avicennia marina HOM05D006062 ORTHO05D007613 4.9e-08 62.0 93 34.4
Cre24.g755197 Chlamydomonas reinhardtii HOM05D006645 ORTHO05D008129 4.9e-08 62.0 115 34.8
Pp3c14_10490 Physcomitrium patens HOM05D006645 ORTHO05D008129 4.9e-08 62.0 61 42.6
Thecc.05G207500 Theobroma cacao HOM05D006062 ORTHO05D007613 3.2e-07 59.3 93 30.1
Cre12.g510400 Chlamydomonas reinhardtii HOM05D006062 ORTHO05D007613 5.5e-07 58.5 106 34.9
Duzib177G0391 Durio zibethinus HOM05D006062 ORTHO05D007613 5.5e-07 58.5 93 31.2
QL09p026245 Quercus lobata HOM05D006062 ORTHO05D007613 7.1e-07 58.2 100 28.0
TWI60G0061 Tripterygium wilfordii HOM05D006062 ORTHO05D007613 7.1e-07 58.2 60 38.3
arahy.Tifrunner.gnm1.ann1.GUDI7G Arachis hypogaea HOM05D006062 ORTHO05D007613 9.3e-07 57.8 83 32.5
arahy.Tifrunner.gnm1.ann1.GZNV26 Arachis hypogaea HOM05D006062 ORTHO05D007613 9.3e-07 57.8 83 32.5
Duzib106G1742 Durio zibethinus HOM05D006062 ORTHO05D007613 9.3e-07 57.8 93 29.0
Gohir.A02G139100 Gossypium hirsutum HOM05D006062 ORTHO05D007613 9.3e-07 57.8 60 36.7
Sed0000932 Sechium edule HOM05D006062 ORTHO05D007613 9.3e-07 57.8 60 40.0
MELO3C005432.2 Cucumis melo HOM05D006062 ORTHO05D007613 1.2e-06 57.4 60 38.3
Gohir.D03G049700 Gossypium hirsutum HOM05D006062 ORTHO05D007613 1.2e-06 57.4 60 36.7
Gorai.003G051200 Gossypium raimondii HOM05D006062 ORTHO05D007613 1.2e-06 57.4 60 36.7
unitig_52.g17696 Utricularia gibba HOM05D006062 ORTHO05D007613 1.2e-06 57.4 80 33.8
Aqoxy3G02060 Aquilegia oxysepala HOM05D006062 ORTHO05D007613 1.6e-06 57.0 60 36.7
Eucgr.K00099 Eucalyptus grandis HOM05D006062 ORTHO05D007613 1.6e-06 57.0 93 29.0
Prupe.2G323500 Prunus persica HOM05D006062 ORTHO05D007613 1.6e-06 57.0 60 36.7
PGR142G0857 Punica granatum HOM05D006062 ORTHO05D007613 1.6e-06 57.0 93 30.1
Cfa015906 Carpinus fangiana HOM05D006062 ORTHO05D007613 2.1e-06 56.6 93 30.1
Glyma.01G229800 Glycine max HOM05D006062 ORTHO05D007613 2.1e-06 56.6 60 36.7
HPP92_025509 Vanilla planifolia HOM05D006062 ORTHO05D007613 2.1e-06 56.6 67 35.8
HPP92_025526 Vanilla planifolia HOM05D006062 ORTHO05D007613 2.1e-06 56.6 67 35.8
Atru.chr12.2018 Acer truncatum HOM05D006062 ORTHO05D007613 2.7e-06 56.2 93 30.1
Cpa.g.sc39.53 Carica papaya HOM05D006062 ORTHO05D007613 2.7e-06 56.2 98 30.6
CsaV3_5G005280 Cucumis sativus L. HOM05D006062 ORTHO05D007613 2.7e-06 56.2 93 31.2
ECA233G2527 Erigeron canadensis HOM05D006062 ORTHO05D007613 2.7e-06 56.2 94 29.8
Manes.08G164800 Manihot esculenta HOM05D006062 ORTHO05D007613 2.7e-06 56.2 93 29.0
SalBow4G0173 Salvia bowleyana HOM05D006062 ORTHO05D007613 2.7e-06 56.2 88 30.7
SMO140G0084 Selaginella moellendorffii HOM05D006062 ORTHO05D007613 2.7e-06 56.2 93 31.2
SMO165G0067 Selaginella moellendorffii HOM05D006645 ORTHO05D008129 2.7e-06 56.2 59 42.4
ATR0829G005 Amborella trichopoda HOM05D006062 ORTHO05D007613 3.5e-06 55.8 84 34.5
Lalb_Chr05g0211331 Lupinus albus HOM05D006062 ORTHO05D007613 3.5e-06 55.8 93 29.0
PSO063G5144 Papaver somniferum HOM05D006062 ORTHO05D007613 3.5e-06 55.8 96 30.2
PSO782G5695 Papaver somniferum HOM05D006062 ORTHO05D007613 3.5e-06 55.8 96 30.2
VMungo0720G1055 Vigna mungo HOM05D006062 ORTHO05D007613 3.5e-06 55.8 93 30.1
HanXRQChr04g0105241 Helianthus annuus HOM05D006062 ORTHO05D007613 4.6e-06 55.5 93 30.1
MD07G1305400 Malus domestica HOM05D006062 ORTHO05D007613 4.6e-06 55.5 60 35.0
CBR_g41690 Chara braunii HOM05D006062 ORTHO05D008129 6.0e-06 55.1 44 45.5
Ciclev10012505m.g Citrus clementina HOM05D006062 ORTHO05D007613 6.0e-06 55.1 94 29.8
Thhalv10014045m.g Eutrema salsugineum HOM05D006062 ORTHO05D007613 6.0e-06 55.1 100 29.0
LjContig00222g0021869 Lotus japonicus HOM05D006062 ORTHO05D007613 6.0e-06 55.1 93 28.0
Hund02967 Selenicereus undatus HOM05D006062 ORTHO05D007613 6.0e-06 55.1 86 30.2
THA.LOC104820874 Tarenaya hassleriana HOM05D006062 ORTHO05D007613 6.0e-06 55.1 60 35.0
AagrBONN_evm.TU.Sc2ySwM_362.1750 Anthoceros agrestis HOM05D006645 ORTHO05D008129 7.9e-06 54.7 68 42.6
DCAR_014570 Daucus carota HOM05D006062 ORTHO05D007613 7.9e-06 54.7 98 32.7
Os08g0162600 Oryza sativa ssp. japonica HOM05D006062 ORTHO05D007613 7.9e-06 54.7 105 28.6


User provided reference genes

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