Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 8.4e-196 686.8 339 100.0
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 5.7e-136 488.0 341 74.2
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 1.0e-132 477.2 352 70.5
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 1.5e-131 473.4 362 71.5
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 1.5e-131 473.4 357 71.1
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 3.3e-131 472.2 347 72.0
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 3.3e-131 472.2 347 72.0
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 2.8e-130 469.2 364 69.2
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 3.6e-130 468.8 362 70.2
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 3.6e-130 468.8 348 71.3
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 1.0e-129 467.2 355 70.1
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 8.9e-129 464.2 366 68.9
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 8.9e-129 464.2 344 71.5
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 3.4e-128 462.2 353 68.8
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 1.3e-127 460.3 354 68.4
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 2.2e-127 459.5 354 68.4
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 2.2e-127 459.5 355 68.7
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 6.4e-127 458.0 352 67.9
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 8.3e-127 457.6 359 68.0
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 4.1e-126 455.3 367 67.0
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 5.4e-126 454.9 379 65.2
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 9.2e-126 454.1 378 66.7
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 1.2e-125 453.8 349 67.9
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 1.6e-125 453.4 362 66.6
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 1.6e-125 453.4 359 68.2
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 2.7e-125 452.6 380 66.1
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 3.9e-124 448.7 381 64.8
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 6.6e-124 448.0 363 66.7
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 6.6e-124 448.0 361 67.6
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 4.3e-123 445.3 388 64.2
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 9.5e-123 444.1 365 67.1
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 1.2e-122 443.7 362 67.1
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 2.1e-122 443.0 385 63.6
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 2.3e-121 439.5 365 65.5
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 2.3e-121 439.5 373 64.6
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 6.8e-121 438.0 365 65.2
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 8.9e-121 437.6 348 67.2
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 4.4e-120 435.3 379 63.9
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 1.3e-119 433.7 349 65.9
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 1.7e-119 433.3 369 64.8
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 4.9e-119 431.8 327 69.4
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 4.9e-119 431.8 361 64.8
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 8.3e-119 431.0 352 66.8
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 1.9e-118 429.9 392 61.2
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 7.0e-118 427.9 377 63.1
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 2.1e-117 426.4 356 64.3
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 1.0e-116 424.1 379 63.1
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 1.7e-116 423.3 358 64.8
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 3.0e-116 422.5 380 62.9
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 1.1e-115 420.6 387 61.0
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 1.9e-115 419.9 392 59.2
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 3.3e-115 419.1 330 68.8
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 1.4e-113 413.7 365 63.8
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 1.2e-112 410.6 389 60.9
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 1.5e-112 410.2 374 61.8
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 5.8e-112 408.3 388 60.8
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 5.8e-112 408.3 372 62.6
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 1.7e-111 406.8 372 62.4
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 2.9e-111 406.0 348 66.1
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 3.7e-111 405.6 340 64.7
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 4.9e-111 405.2 362 62.7
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 8.3e-111 404.4 340 64.7
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 8.3e-111 404.4 381 59.3
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 4.1e-110 402.1 363 62.5
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 2.1e-109 399.8 372 61.3
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 6.0e-109 398.3 377 58.4
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 3.0e-108 396.0 388 57.7
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.5e-107 393.7 382 57.1
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.5e-107 393.7 380 57.6
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 1.5e-107 393.7 354 62.1
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 5.6e-107 391.7 372 58.3
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 1.1e-105 387.5 333 64.9
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 2.4e-105 386.3 376 58.5
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 2.4e-105 386.3 322 64.9
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 4.2e-102 375.6 378 56.9
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 5.4e-102 375.2 368 58.4
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 7.1e-102 374.8 371 57.1
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 1.2e-101 374.0 295 66.1
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 1.0e-100 370.9 383 55.9
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 1.0e-100 370.9 383 55.9
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 1.7e-100 370.2 380 55.8
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 2.3e-100 369.8 385 56.1
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 2.3e-100 369.8 382 56.3
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 2.3e-100 369.8 382 56.3
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 1.2e-98 364.0 332 60.5
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 3.6e-98 362.5 300 65.7
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 4.7e-98 362.1 382 54.7
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 6.2e-98 361.7 381 55.1
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 1.4e-97 360.5 370 54.3
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 1.4e-97 360.5 378 54.8
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 1.8e-97 360.1 304 62.5
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 1.8e-97 360.1 369 56.6
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 1.8e-97 360.1 442 50.7
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 1.2e-96 357.5 375 55.7
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 1.5e-96 357.1 373 54.4
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 3.4e-96 355.9 304 62.2
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 7.6e-96 354.8 291 66.0
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 2.2e-95 353.2 378 54.5
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 2.2e-95 353.2 378 54.5
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 4.9e-95 352.1 382 53.7
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 6.4e-95 351.7 379 55.1
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 1.2e-93 347.4 382 53.9
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 1.0e-92 344.4 355 56.6
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 1.0e-92 344.4 480 46.7
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 1.9e-91 340.1 277 66.8
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 3.3e-91 339.3 277 63.2
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 3.6e-90 335.9 277 66.1
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 6.2e-90 335.1 374 52.7
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.1e-89 334.3 374 52.4
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 1.2e-88 330.9 370 53.0
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.6e-88 329.7 370 52.7
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 7.6e-88 328.2 392 51.3
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 9.9e-88 327.8 337 54.9
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 4.9e-87 325.5 369 50.9
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.4e-86 323.9 372 51.3
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 4.2e-86 322.4 370 51.9
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 3.9e-84 315.8 376 51.6
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 6.9e-81 305.1 358 50.6
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 8.4e-79 298.1 386 49.2
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 3.9e-76 289.3 277 61.0
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 5.6e-75 285.4 309 52.1
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 2.1e-74 283.5 274 60.2
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 2.4e-73 280.0 298 53.4
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 9.0e-73 278.1 370 48.6
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 2.2e-71 273.5 283 54.1
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 6.5e-71 271.9 290 54.1
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 2.3e-68 263.5 295 53.9
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 4.3e-67 259.2 258 55.4
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 6.9e-65 251.9 252 59.1
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 5.9e-64 248.8 146 81.5
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 1.0e-60 238.0 145 78.6
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 1.0e-55 221.5 154 76.6
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 2.4e-41 173.7 148 62.8
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 5.3e-41 172.6 107 78.5
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 2.8e-34 150.2 263 39.9
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 2.4e-33 147.1 260 38.8
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 2.4e-33 147.1 91 79.1
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 4.5e-32 142.9 78 83.3
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 8.5e-31 138.7 91 73.6
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.4e-25 120.6 145 46.9
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 3.1e-25 120.2 100 63.0
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 4.4e-19 99.8 69 69.6
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 7.0e-17 92.4 94 47.9
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 5.6e-14 82.8 93 52.7
unitig_61.g26223 Utricularia gibba HOM05D005199 ORTHO05D006277 9.2e-09 65.5 59 55.9
unitig_0.g1098 Utricularia gibba HOM05D005199 ORTHO05D006277 7.8e-08 62.4 72 45.8


User provided reference genes

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