Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 3.8e-74 281.6 156 100.0
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 1.1e-36 157.1 148 64.2
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 6.9e-36 154.5 148 64.2
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 6.9e-36 154.5 148 64.2
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 2.7e-32 142.5 147 61.2
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 2.3e-31 139.4 145 59.3
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 5.7e-30 134.8 145 57.9
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 5.7e-30 134.8 148 56.1
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.3e-29 133.7 148 56.1
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 6.3e-29 131.3 148 55.4
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 2.0e-27 126.3 148 57.4
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 3.4e-27 125.6 143 56.6
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.0e-26 124.0 145 55.2
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.0e-26 124.0 135 57.8
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 2.9e-26 122.5 148 53.4
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 8.5e-26 120.9 146 53.4
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 8.5e-26 120.9 145 56.6
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 1.1e-25 120.6 148 53.4
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 1.9e-25 119.8 135 56.3
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 2.5e-25 119.4 148 52.7
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 3.2e-25 119.0 146 53.4
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 3.2e-25 119.0 148 50.7
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 3.2e-25 119.0 143 51.7
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 4.2e-25 118.6 145 55.2
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 9.4e-25 117.5 143 51.7
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 9.4e-25 117.5 143 51.7
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 2.7e-24 115.9 147 52.4
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 2.7e-24 115.9 146 52.7
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 2.7e-24 115.9 147 53.1
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 3.6e-24 115.5 148 50.7
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 1.0e-23 114.0 148 53.4
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 1.8e-23 113.2 148 51.4
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 3.0e-23 112.5 146 48.6
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 3.9e-23 112.1 143 51.0
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 5.1e-23 111.7 146 52.7
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 5.1e-23 111.7 144 54.2
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 5.1e-23 111.7 144 48.6
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 6.7e-23 111.3 148 51.4
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 8.8e-23 110.9 146 52.1
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 1.5e-22 110.2 146 49.3
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 3.3e-22 109.0 148 48.6
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.3e-22 109.0 147 50.3
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 9.7e-22 107.5 146 51.4
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 9.7e-22 107.5 141 50.4
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 9.7e-22 107.5 148 50.7
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 9.7e-22 107.5 150 51.3
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 1.7e-21 106.7 148 47.3
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 1.7e-21 106.7 146 49.3
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 3.7e-21 105.5 145 51.0
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.8e-21 105.1 147 50.3
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 4.8e-21 105.1 135 48.9
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 8.2e-21 104.4 135 50.4
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.8e-20 103.2 148 45.9
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 1.8e-20 103.2 146 50.7
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 4.1e-20 102.1 148 48.0
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 4.1e-20 102.1 148 48.6
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 7.0e-20 101.3 151 48.3
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 2.0e-19 99.8 148 48.6
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 3.5e-19 99.0 135 48.9
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 4.5e-19 98.6 146 47.9
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 5.9e-19 98.2 148 49.3
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 5.9e-19 98.2 148 48.0
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 7.7e-19 97.8 148 49.3
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.0e-18 97.4 143 44.1
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 1.0e-18 97.4 148 47.3
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 1.0e-18 97.4 148 48.0
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 1.3e-18 97.1 139 45.3
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 1.7e-18 96.7 148 45.9
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 2.2e-18 96.3 144 45.8
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 2.9e-18 95.9 146 44.5
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 8.5e-18 94.4 148 44.6
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 8.5e-18 94.4 135 47.4
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 1.4e-17 93.6 118 50.8
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 1.9e-17 93.2 148 48.6
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 3.2e-17 92.4 140 46.4
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 4.2e-17 92.0 148 45.9
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 5.5e-17 91.7 135 49.6
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 7.2e-17 91.3 135 48.1
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 9.4e-17 90.9 138 48.6
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 1.2e-16 90.5 145 46.9
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.6e-16 90.1 135 48.1
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.6e-16 90.1 135 48.1
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 1.6e-16 90.1 148 46.6
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 1.6e-16 90.1 148 45.9
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 2.1e-16 89.7 135 48.9
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 2.1e-16 89.7 135 48.9
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 2.1e-16 89.7 69 71.0
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 2.1e-16 89.7 130 47.7
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 2.7e-16 89.4 135 44.4
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 3.6e-16 89.0 141 46.1
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 4.7e-16 88.6 135 47.4
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 8.0e-16 87.8 135 47.4
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 1.4e-15 87.0 135 48.9
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 1.4e-15 87.0 148 43.9
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 3.0e-15 85.9 152 47.4
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 5.2e-15 85.1 164 42.1
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 2.0e-14 83.2 73 67.1
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 2.0e-14 83.2 69 66.7
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 5.7e-14 81.6 144 43.1
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 9.7e-14 80.9 135 43.0
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 6.3e-13 78.2 145 41.4
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 1.8e-12 76.6 118 44.9
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 5.3e-12 75.1 134 46.3
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 5.3e-12 75.1 134 46.3
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.0e-12 74.7 135 43.7
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 7.0e-12 74.7 146 41.8
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 2.6e-11 72.8 149 38.9
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 3.5e-11 72.4 146 39.7
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 4.5e-11 72.0 69 62.3
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 4.5e-11 72.0 147 36.7
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 2.2e-10 69.7 147 38.1
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 2.2e-10 69.7 148 37.8
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 2.9e-10 69.3 127 44.1
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 3.8e-10 68.9 148 39.2
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 5.0e-10 68.6 150 38.7
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 5.0e-10 68.6 147 36.7
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 6.5e-10 68.2 144 41.0
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 6.5e-10 68.2 143 42.7
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 3.2e-09 65.9 135 40.0
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.2e-09 65.9 46 71.7
SEGI_01314 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 3.2e-09 65.9 45 71.1
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 1.2e-08 63.9 142 37.3
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 1.6e-08 63.5 135 39.3
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 2.1e-08 63.2 146 38.4
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 2.7e-08 62.8 139 35.3
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 3.6e-08 62.4 146 36.3
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 1.0e-07 60.8 150 35.3
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 3.0e-07 59.3 125 36.8
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 3.0e-07 59.3 93 45.2
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 3.0e-07 59.3 63 58.7
PSO017G4858 Papaver somniferum HOM05D000007 ORTHO05D000017 4.0e-07 58.9 127 34.6
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 8.8e-07 57.8 129 41.1
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 2.6e-06 56.2 59 64.4
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 3.3e-06 55.8 43 72.1
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 7.5e-06 54.7 59 61.0


User provided reference genes

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