Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A474T86 Lonicera japonica HOM05D002896 ORTHO05D235775 5.0e-96 354.4 172 100.0
A03p40500 Brassica napus HOM05D002896 ORTHO05D003263 9.1e-13 77.8 146 33.6
BraA03t13209Z Brassica rapa HOM05D002896 ORTHO05D003263 9.1e-13 77.8 146 33.6
BcaC01g03715 Brassica carinata HOM05D002896 ORTHO05D003263 2.0e-12 76.6 146 34.2
CARHR093340 Cardamine hirsuta HOM05D002896 ORTHO05D003263 2.0e-12 76.6 146 33.6
AT3G18030 Arabidopsis thaliana HOM05D002896 ORTHO05D003263 2.6e-12 76.3 146 33.6
Cfa012436 Carpinus fangiana HOM05D002896 ORTHO05D003263 2.6e-12 76.3 134 32.1
HanXRQChr04g0100751 Helianthus annuus HOM05D002896 ORTHO05D003263 3.4e-12 75.9 131 35.1
ECA247G2468 Erigeron canadensis HOM05D002896 ORTHO05D003263 5.9e-12 75.1 134 33.6
Carub.0003s1774 Capsella rubella HOM05D002896 ORTHO05D003263 7.7e-12 74.7 146 32.9
Aa31LG8G4880 Aethionema arabicum HOM05D002896 ORTHO05D003263 1.0e-11 74.3 146 32.9
AL3G31180 Arabidopsis lyrata HOM05D002896 ORTHO05D003263 1.0e-11 74.3 146 32.9
HanXRQChr02g0035121 Helianthus annuus HOM05D002896 ORTHO05D003263 1.0e-11 74.3 131 34.4
Sp3g16140 Schrenkiella parvula HOM05D002896 ORTHO05D003263 1.0e-11 74.3 146 32.9
THA.LOC104820352 Tarenaya hassleriana HOM05D002896 ORTHO05D003263 1.0e-11 74.3 146 32.2
BcaB06g25870 Brassica carinata HOM05D002896 ORTHO05D003263 1.3e-11 73.9 146 32.9
BcaC01g03713 Brassica carinata HOM05D002896 ORTHO05D003263 1.3e-11 73.9 137 33.6
C03p49340 Brassica napus HOM05D002896 ORTHO05D003263 1.3e-11 73.9 137 33.6
BolC3t17225H Brassica oleracea HOM05D002896 ORTHO05D003263 1.3e-11 73.9 137 33.6
Thhalv10021520m.g Eutrema salsugineum HOM05D002896 ORTHO05D003263 1.3e-11 73.9 146 32.9
Lsat_1_v5_gn_5_13160 Lactuca sativa HOM05D002896 ORTHO05D003263 1.3e-11 73.9 146 32.9
Hund00541 Selenicereus undatus HOM05D002896 ORTHO05D003263 1.3e-11 73.9 137 31.4
EL10Ac1g00873 Beta vulgaris HOM05D002896 ORTHO05D003263 1.7e-11 73.6 131 32.1
AUR62016361 Chenopodium quinoa HOM05D002896 ORTHO05D003263 1.7e-11 73.6 131 32.1
AUR62011542 Chenopodium quinoa HOM05D002896 ORTHO05D003263 2.2e-11 73.2 131 32.1
A05p31770 Brassica napus HOM05D002896 ORTHO05D003263 2.9e-11 72.8 146 32.9
BraA05t22009Z Brassica rapa HOM05D002896 ORTHO05D003263 2.9e-11 72.8 146 32.9
PGR031G0115 Punica granatum HOM05D002896 ORTHO05D003263 2.9e-11 72.8 131 32.8
Hund06571 Selenicereus undatus HOM05D002896 ORTHO05D003263 2.9e-11 72.8 131 32.1
unitig_82.g27137 Utricularia gibba HOM05D002896 ORTHO05D003263 2.9e-11 72.8 131 32.1
CDE09G0352 Ceratophyllum demersum HOM05D002896 ORTHO05D003263 3.8e-11 72.4 134 31.3
Sc04g0001010 Simmondsia chinensis HOM05D002896 ORTHO05D003263 3.8e-11 72.4 134 32.1
BcaB04g20800 Brassica carinata HOM05D002896 ORTHO05D003263 5.0e-11 72.0 146 32.2
A01p36420 Brassica napus HOM05D002896 ORTHO05D003263 5.0e-11 72.0 146 32.2
BraA01t03707Z Brassica rapa HOM05D002896 ORTHO05D003263 5.0e-11 72.0 146 32.2
Gohir.D05G197400 Gossypium hirsutum HOM05D002896 ORTHO05D003263 5.0e-11 72.0 137 32.1
Gorai.009G202300 Gossypium raimondii HOM05D002896 ORTHO05D003263 5.0e-11 72.0 137 32.1
BcaC09g48762 Brassica carinata HOM05D002896 ORTHO05D003263 6.5e-11 71.6 146 32.2
C01p46170 Brassica napus HOM05D002896 ORTHO05D003263 6.5e-11 71.6 146 32.2
BolC1t04579H Brassica oleracea HOM05D002896 ORTHO05D003263 6.5e-11 71.6 146 32.2
Gohir.A05G194200 Gossypium hirsutum HOM05D002896 ORTHO05D003263 6.5e-11 71.6 137 32.1
Lsat_1_v5_gn_1_28461 Lactuca sativa HOM05D002896 ORTHO05D003263 6.5e-11 71.6 128 32.0
Sabra15G0112000 Salix brachista HOM05D002896 ORTHO05D003263 6.5e-11 71.6 134 32.1
COL.COLO4_26320 Corchorus olitorius HOM05D002896 ORTHO05D003263 8.5e-11 71.2 134 31.3
Lalb_Chr01g0021271 Lupinus albus HOM05D002896 ORTHO05D003263 8.5e-11 71.2 144 28.5
Phvul.008G074500 Phaseolus vulgaris HOM05D002896 ORTHO05D003263 8.5e-11 71.2 121 33.1
Potri.015G089600 Populus trichocarpa HOM05D002896 ORTHO05D003263 8.5e-11 71.2 134 31.3
Dinv11112 Davidia involucrata HOM05D002896 ORTHO05D003263 1.1e-10 70.9 131 32.1
Duzib116G0381 Durio zibethinus HOM05D002896 ORTHO05D003263 1.1e-10 70.9 137 31.4
SHI04274 Sapria himalayana HOM05D002896 ORTHO05D003263 1.1e-10 70.9 131 32.8
Nitab4.5_0000360g0150 Nicotiana tabacum HOM05D002896 ORTHO05D003263 1.4e-10 70.5 131 31.3
Ah.10g026630 Amaranthus hybridus HOM05D002896 ORTHO05D003263 1.9e-10 70.1 131 30.5
arahy.Tifrunner.gnm1.ann1.ZCQ994 Arachis hypogaea HOM05D002896 ORTHO05D003263 1.9e-10 70.1 134 27.6
Cpa.g.sc36.74 Carica papaya HOM05D002896 ORTHO05D003263 1.9e-10 70.1 155 29.7
FvH4_5g07250 Fragaria vesca HOM05D002896 ORTHO05D003263 1.9e-10 70.1 134 30.6
FAN04G0027 Fragaria x ananassa HOM05D002896 ORTHO05D003263 1.9e-10 70.1 134 31.3
FAN18G1762 Fragaria x ananassa HOM05D002896 ORTHO05D003263 1.9e-10 70.1 134 30.6
Manes.14G106900 Manihot esculenta HOM05D002896 ORTHO05D003263 1.9e-10 70.1 134 30.6
RcHm_v2.0_Chr7g0191381 Rosa chinensis HOM05D002896 ORTHO05D003263 1.9e-10 70.1 134 30.6
unitig_748.g7744 Utricularia gibba HOM05D002896 ORTHO05D003263 2.5e-10 69.7 131 32.1
BcaC05g28724 Brassica carinata HOM05D002896 ORTHO05D003263 3.2e-10 69.3 146 30.8
BolC5t33561H Brassica oleracea HOM05D002896 ORTHO05D003263 3.2e-10 69.3 146 30.8
FAN13G3304 Fragaria x ananassa HOM05D002896 ORTHO05D003263 3.2e-10 69.3 131 31.3
MD06G1157900 Malus domestica HOM05D002896 ORTHO05D003263 3.2e-10 69.3 134 29.9
TWI63G1061 Tripterygium wilfordii HOM05D002896 ORTHO05D003263 3.2e-10 69.3 146 30.8
vmacro16704 Vaccinium macrocarpon HOM05D002896 ORTHO05D003263 3.2e-10 69.3 131 30.5
VMungo1383G0995 Vigna mungo HOM05D002896 ORTHO05D003263 3.2e-10 69.3 121 32.2
Glyma.18G223550 Glycine max HOM05D002896 ORTHO05D003263 4.2e-10 68.9 133 31.6
Prupe.5G158000 Prunus persica HOM05D002896 ORTHO05D003263 4.2e-10 68.9 137 30.7
QL10p005413 Quercus lobata HOM05D002896 ORTHO05D003263 4.2e-10 68.9 134 30.6
Rhsim04G0164200 Rhododendron simsii HOM05D002896 ORTHO05D003263 4.2e-10 68.9 131 31.3
vmacro22315 Vaccinium macrocarpon HOM05D002896 ORTHO05D003263 4.2e-10 68.9 122 31.1
CARHR038210 Cardamine hirsuta HOM05D002896 ORTHO05D003263 5.5e-10 68.6 131 29.8
CiPaw.12G063500 Carya illinoinensis HOM05D002896 ORTHO05D003263 5.5e-10 68.6 134 29.9
Ciclev10022229m.g Citrus clementina HOM05D002896 ORTHO05D003263 5.5e-10 68.6 134 30.6
Glyma.18G223700 Glycine max HOM05D002896 ORTHO05D003263 5.5e-10 68.6 122 31.1
SGA_v2.0_scaffold118G32461 Striga asiatica HOM05D002896 ORTHO05D003263 5.5e-10 68.6 131 31.3
Zm00001eb005060 Zea mays HOM05D002896 ORTHO05D003263 5.5e-10 68.6 136 31.6
Actinidia36784 Actinidia chinensis HOM05D002896 ORTHO05D003263 7.2e-10 68.2 131 31.3
Aqoxy2G02471 Aquilegia oxysepala HOM05D002896 ORTHO05D003263 7.2e-10 68.2 134 29.9
Hma1.2p1_0046F.1_g027650 Hydrangea macrophylla HOM05D002896 ORTHO05D003263 7.2e-10 68.2 131 30.5
Rhsim12G0171600 Rhododendron simsii HOM05D002896 ORTHO05D003263 7.2e-10 68.2 131 31.3
Zm00001eb373930 Zea mays HOM05D002896 ORTHO05D003263 7.2e-10 68.2 136 31.6
AT1G48605 Arabidopsis thaliana HOM05D002896 ORTHO05D003263 9.4e-10 67.8 131 29.8
MD14G1164500 Malus domestica HOM05D002896 ORTHO05D003263 9.4e-10 67.8 134 31.3
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 9.4e-10 67.8 135 31.9
Nitab4.5_0015143g0010 Nicotiana tabacum HOM05D002896 ORTHO05D003263 9.4e-10 67.8 131 30.5
PSO339G3213 Papaver somniferum HOM05D002896 ORTHO05D003263 9.4e-10 67.8 134 30.6
PSO782G5438 Papaver somniferum HOM05D002896 ORTHO05D003263 9.4e-10 67.8 131 31.3
TWI39G0772 Tripterygium wilfordii HOM05D002896 ORTHO05D003263 9.4e-10 67.8 134 30.6
Aqoxy3G03446 Aquilegia oxysepala HOM05D002896 ORTHO05D003263 1.2e-09 67.4 134 31.3
Aqoxy3G03447 Aquilegia oxysepala HOM05D002896 ORTHO05D003263 1.2e-09 67.4 134 31.3
Lj5A100T67 Lonicera japonica HOM05D002896 ORTHO05D003263 1.2e-09 67.4 131 31.3
MBI14_g44928_MAGBIO Magnolia biondii HOM05D002896 ORTHO05D003263 1.2e-09 67.4 132 31.1
Manes.06G064800 Manihot esculenta HOM05D002896 ORTHO05D003263 1.2e-09 67.4 155 30.3
Peaxi162Scf00119g00619 Petunia axillaris HOM05D002896 ORTHO05D003263 1.2e-09 67.4 131 30.5
Solyc08g080920.3 Solanum lycopersicum HOM05D002896 ORTHO05D003263 1.2e-09 67.4 131 30.5
Sopen08g029230 Solanum pennellii HOM05D002896 ORTHO05D003263 1.2e-09 67.4 131 30.5
Thecc.08G026400 Theobroma cacao HOM05D002896 ORTHO05D003263 1.2e-09 67.4 134 29.9
TAR374G1192 Trochodendron aralioides HOM05D002896 ORTHO05D003263 1.2e-09 67.4 136 28.7
AL1G55260 Arabidopsis lyrata HOM05D002896 ORTHO05D003263 1.6e-09 67.0 131 29.8
CAN.G774.4 Capsicum annuum HOM05D002896 ORTHO05D003263 1.6e-09 67.0 131 30.5
DCAR_021602 Daucus carota HOM05D002896 ORTHO05D003263 1.6e-09 67.0 134 30.6
Lalb_Chr13g0291641 Lupinus albus HOM05D002896 ORTHO05D003263 1.6e-09 67.0 131 29.8
Os06g0199500 Oryza sativa ssp. japonica HOM05D002896 ORTHO05D003263 1.6e-09 67.0 134 31.3
Sed0003126 Sechium edule HOM05D002896 ORTHO05D003263 2.1e-09 66.6 131 30.5
VMungo0331G1155 Vigna mungo HOM05D002896 ORTHO05D003263 2.1e-09 66.6 131 29.8
Atru.chr9.1000 Acer truncatum HOM05D002896 ORTHO05D003263 2.7e-09 66.2 134 29.1
CSS0017851 Camellia sinensis var. sinensis HOM05D002896 ORTHO05D003263 2.7e-09 66.2 131 30.5
ClCG03G003440 Citrullus lanatus HOM05D002896 ORTHO05D003263 2.7e-09 66.2 131 30.5
Cc06_g20670 Coffea canephora HOM05D002896 ORTHO05D003263 2.7e-09 66.2 131 29.0
CsaV3_1G009240 Cucumis sativus L. HOM05D002896 ORTHO05D003263 2.7e-09 66.2 131 30.5
Migut.C01237 Erythranthe guttata HOM05D002896 ORTHO05D003263 2.7e-09 66.2 134 31.3
Eucgr.K01291 Eucalyptus grandis HOM05D002896 ORTHO05D003263 2.7e-09 66.2 131 29.8
Glyma.03G020900 Glycine max HOM05D002896 ORTHO05D003263 2.7e-09 66.2 131 30.5
Nitab4.5_0000580g0010 Nicotiana tabacum HOM05D002896 ORTHO05D003263 2.7e-09 66.2 131 30.5
Oeu030585.1 Olea europaea HOM05D002896 ORTHO05D003263 2.7e-09 66.2 134 29.1
TAR622G0791 Trochodendron aralioides HOM05D002896 ORTHO05D003263 2.7e-09 66.2 127 29.9
ATR1134G062 Amborella trichopoda HOM05D002896 ORTHO05D003263 3.6e-09 65.9 145 33.8
Glyma.18G223800 Glycine max HOM05D002896 ORTHO05D003263 3.6e-09 65.9 134 32.1
Phvul.010G086000 Phaseolus vulgaris HOM05D002896 ORTHO05D003263 3.6e-09 65.9 131 29.8
Glyma.18G223400 Glycine max HOM05D002896 ORTHO05D003263 4.7e-09 65.5 125 30.4
PSO063G0222 Papaver somniferum HOM05D002896 ORTHO05D003263 4.7e-09 65.5 155 28.4
Ca_23821_v3 Cicer arietinum L. HOM05D002896 ORTHO05D003263 6.1e-09 65.1 131 29.0
Ca_23826_v3 Cicer arietinum L. HOM05D002896 ORTHO05D003263 6.1e-09 65.1 131 29.0
SMO134G0228 Selaginella moellendorffii HOM05D002896 ORTHO05D003263 6.1e-09 65.1 135 28.9
TPR.G19629 Trifolium pratense HOM05D002896 ORTHO05D003263 6.1e-09 65.1 122 30.3
unitig_46.g18023 Utricularia gibba HOM05D002896 ORTHO05D003263 6.1e-09 65.1 131 31.3
CiPaw.11G092900 Carya illinoinensis HOM05D002896 ORTHO05D003263 8.0e-09 64.7 131 30.5
Migut.N00872 Erythranthe guttata HOM05D002896 ORTHO05D003263 8.0e-09 64.7 131 29.8
Gohir.D06G007700 Gossypium hirsutum HOM05D002896 ORTHO05D003263 8.0e-09 64.7 127 30.7
Lj1g0020531 Lotus japonicus HOM05D002896 ORTHO05D003263 8.0e-09 64.7 131 29.0
Phvul.008G074300 Phaseolus vulgaris HOM05D002896 ORTHO05D003263 8.0e-09 64.7 121 34.7
Psat4g196200 Pisum sativum HOM05D002896 ORTHO05D003263 8.0e-09 64.7 122 30.3
Zm00001eb120850 Zea mays HOM05D002896 ORTHO05D003263 8.0e-09 64.7 122 31.1
Aa31LG7G2850 Aethionema arabicum HOM05D002896 ORTHO05D003263 1.0e-08 64.3 135 31.1
DCAR_016748 Daucus carota HOM05D002896 ORTHO05D003263 1.0e-08 64.3 134 29.9
Glyma.07G082800 Glycine max HOM05D002896 ORTHO05D003263 1.0e-08 64.3 130 29.2
Psat4g223920 Pisum sativum HOM05D002896 ORTHO05D003263 1.0e-08 64.3 131 29.0
AagrBONN_evm.TU.Sc2ySwM_117.2391 Anthoceros agrestis HOM05D002896 ORTHO05D003263 1.4e-08 63.9 122 33.6
arahy.Tifrunner.gnm1.ann1.EPGX33 Arachis hypogaea HOM05D002896 ORTHO05D003263 1.4e-08 63.9 131 29.8
Cc05_g01460 Coffea canephora HOM05D002896 ORTHO05D003263 1.4e-08 63.9 131 29.0
Migut.C00391 Erythranthe guttata HOM05D002896 ORTHO05D003263 1.4e-08 63.9 141 29.1
arahy.Tifrunner.gnm1.ann1.LP7NGD Arachis hypogaea HOM05D002896 ORTHO05D003263 1.8e-08 63.5 131 29.8
Gorai.010G010400 Gossypium raimondii HOM05D002896 ORTHO05D003263 1.8e-08 63.5 127 30.7
MD14G1015700 Malus domestica HOM05D002896 ORTHO05D003263 1.8e-08 63.5 121 31.4
Medtr7g075760 Medicago truncatula HOM05D002896 ORTHO05D003263 1.8e-08 63.5 123 29.3
Medtr7g076050 Medicago truncatula HOM05D002896 ORTHO05D003263 1.8e-08 63.5 123 29.3
arahy.Tifrunner.gnm1.ann1.67MFWE Arachis hypogaea HOM05D002896 ORTHO05D003263 2.3e-08 63.2 131 29.8
arahy.Tifrunner.gnm1.ann1.M733BB Arachis hypogaea HOM05D002896 ORTHO05D003263 2.3e-08 63.2 131 29.8
Lj1g0011280 Lotus japonicus HOM05D002896 ORTHO05D003263 3.0e-08 62.8 144 29.9
Solyc12g056270.2 Solanum lycopersicum HOM05D002896 ORTHO05D003263 3.0e-08 62.8 134 28.4
PGSC0003DMG400004975 Solanum tuberosum HOM05D002896 ORTHO05D003263 3.0e-08 62.8 134 28.4
arahy.Tifrunner.gnm1.ann1.3XG8T9 Arachis hypogaea HOM05D002896 ORTHO05D003263 3.9e-08 62.4 127 32.3
arahy.Tifrunner.gnm1.ann1.49BGXI Arachis hypogaea HOM05D002896 ORTHO05D003263 3.9e-08 62.4 127 32.3
arahy.Tifrunner.gnm1.ann1.L5RF1Z Arachis hypogaea HOM05D002896 ORTHO05D003263 3.9e-08 62.4 126 29.4
MELO3C026216.2 Cucumis melo HOM05D002896 ORTHO05D003263 3.9e-08 62.4 118 32.2
CsaV3_1G000770 Cucumis sativus L. HOM05D002896 ORTHO05D003263 3.9e-08 62.4 118 32.2
GSVIVG01007555001 Vitis vinifera HOM05D002896 ORTHO05D003263 3.9e-08 62.4 134 29.1
ATR1120G083 Amborella trichopoda HOM05D002896 ORTHO05D003263 5.2e-08 62.0 137 26.3
Medtr8g035610 Medicago truncatula HOM05D002896 ORTHO05D003263 5.2e-08 62.0 122 28.7
Sp1g35570 Schrenkiella parvula HOM05D002896 ORTHO05D003263 5.2e-08 62.0 131 27.5
Sopen12g028790 Solanum pennellii HOM05D002896 ORTHO05D003263 5.2e-08 62.0 134 28.4
Cpa.g.sc4.63 Carica papaya HOM05D002896 ORTHO05D003263 6.7e-08 61.6 122 30.3
Duzib041G0791 Durio zibethinus HOM05D002896 ORTHO05D003263 6.7e-08 61.6 125 28.8
arahy.Tifrunner.gnm1.ann1.2J6PAY Arachis hypogaea HOM05D002896 ORTHO05D003263 8.8e-08 61.2 126 29.4
BcaB04g18977 Brassica carinata HOM05D002896 ORTHO05D003263 1.1e-07 60.8 141 33.3
arahy.Tifrunner.gnm1.ann1.3XM56G Arachis hypogaea HOM05D002896 ORTHO05D003263 1.5e-07 60.5 127 31.5
ClCG06G017690 Citrullus lanatus HOM05D002896 ORTHO05D003263 1.5e-07 60.5 118 31.4
Manes.06G064700 Manihot esculenta HOM05D002896 ORTHO05D003263 1.5e-07 60.5 134 30.6
Gohir.A06G010300 Gossypium hirsutum HOM05D002896 ORTHO05D003263 2.0e-07 60.1 128 30.5
MELO3C002329.2 Cucumis melo HOM05D002896 ORTHO05D003263 2.6e-07 59.7 143 28.0
ATR1120G133 Amborella trichopoda HOM05D002896 ORTHO05D003263 3.3e-07 59.3 135 27.4
arahy.Tifrunner.gnm1.ann1.B6R500 Arachis hypogaea HOM05D002896 ORTHO05D003263 3.3e-07 59.3 134 25.4
AagrBONN_evm.TU.Sc2ySwM_344.685 Anthoceros agrestis HOM05D000001 ORTHO05D003263 4.4e-07 58.9 119 35.3
Pp3c13_11510 Physcomitrium patens HOM05D002896 ORTHO05D003263 4.4e-07 58.9 135 28.9
Pp3c4_31830 Physcomitrium patens HOM05D002896 ORTHO05D003263 4.4e-07 58.9 135 28.9
RcHm_v2.0_Chr3g0460241 Rosa chinensis HOM05D002896 ORTHO05D003263 4.4e-07 58.9 123 30.9
Sed0022612 Sechium edule HOM05D002896 ORTHO05D003263 4.4e-07 58.9 118 31.4
THA.LOC104812168 Tarenaya hassleriana HOM05D002896 ORTHO05D003263 7.4e-07 58.2 135 28.9
ATR1120G027 Amborella trichopoda HOM05D002896 ORTHO05D003263 9.7e-07 57.8 135 26.7
Thhalv10012360m.g Eutrema salsugineum HOM05D002896 ORTHO05D003263 1.3e-06 57.4 117 29.9
CBR_g28078 Chara braunii HOM05D002896 ORTHO05D003263 8.2e-06 54.7 121 28.9


User provided reference genes

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