Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 2.1e-132 475.7 244 100.0
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 1.8e-78 296.6 232 69.8
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 2.3e-78 296.2 236 69.9
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.3e-73 280.4 236 66.5
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.0e-70 270.8 221 66.5
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 3.9e-70 268.9 252 59.9
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 5.1e-70 268.5 259 59.5
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.0e-69 266.5 218 65.6
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 2.6e-69 266.2 217 66.4
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 2.6e-69 266.2 225 66.2
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.8e-68 261.9 218 64.7
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 2.4e-67 259.6 220 64.5
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 5.3e-67 258.5 229 63.3
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 1.2e-66 257.3 220 62.7
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.0e-65 254.2 223 61.4
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 1.0e-65 254.2 237 62.0
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 1.3e-65 253.8 216 64.4
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 1.7e-65 253.4 238 61.3
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 6.5e-65 251.5 231 62.8
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 1.9e-64 250.0 210 66.7
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 1.9e-64 250.0 247 59.9
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 5.5e-64 248.4 228 64.5
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 9.4e-64 247.7 239 62.3
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.2e-63 247.3 238 59.7
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.6e-63 246.9 238 59.2
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.6e-63 246.9 234 61.1
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 2.1e-63 246.5 233 58.4
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 3.6e-63 245.7 246 61.0
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 4.7e-63 245.4 239 61.5
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 1.0e-62 244.2 236 57.2
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.0e-62 244.2 237 58.2
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 3.0e-62 242.7 251 60.6
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 6.7e-62 241.5 239 60.3
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 8.8e-62 241.1 234 60.3
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 1.5e-61 240.4 245 59.6
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.3e-61 239.2 241 56.8
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.3e-60 237.3 229 57.6
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.2e-60 236.5 221 61.1
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 8.2e-60 234.6 241 56.0
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 1.4e-59 233.8 241 55.6
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.4e-59 233.8 240 56.2
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 1.8e-59 233.4 230 58.3
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 2.4e-59 233.0 244 56.1
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.1e-59 232.6 241 55.2
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 1.2e-58 230.7 231 57.6
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 3.5e-58 229.2 212 59.4
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 1.3e-57 227.3 224 60.3
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 5.0e-57 225.3 261 57.5
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 6.5e-57 224.9 239 55.6
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 6.5e-57 224.9 237 57.0
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 9.4e-56 221.1 230 55.7
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 1.2e-55 220.7 241 53.1
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 2.1e-55 219.9 240 55.4
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 2.1e-55 219.9 234 57.3
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 4.7e-55 218.8 235 55.3
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 6.1e-55 218.4 222 56.8
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 6.1e-55 218.4 235 55.3
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.4e-54 217.2 235 55.3
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 2.3e-54 216.5 229 55.9
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 4.0e-54 215.7 236 53.0
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 6.7e-54 214.9 244 54.1
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 2.6e-53 213.0 231 55.4
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 2.6e-53 213.0 232 52.2
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 3.3e-53 212.6 259 55.2
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 3.3e-53 212.6 242 55.4
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 5.7e-53 211.8 231 57.1
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 3.7e-52 209.1 232 53.9
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 8.2e-52 208.0 237 52.7
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 1.8e-51 206.8 215 57.2
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 9.1e-51 204.5 234 52.1
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 2.7e-50 203.0 253 51.0
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 1.0e-49 201.1 224 54.5
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 1.0e-49 201.1 228 49.6
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 1.3e-49 200.7 232 52.2
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 2.2e-49 199.9 237 52.3
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 2.9e-49 199.5 231 52.8
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 1.1e-48 197.6 233 50.6
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 1.5e-48 197.2 215 53.5
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 4.2e-48 195.7 240 50.8
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 9.4e-48 194.5 229 51.5
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.0e-46 191.0 229 51.1
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 6.8e-46 188.3 244 53.3
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 6.8e-46 188.3 240 49.2
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 2.0e-45 186.8 235 48.5
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 2.0e-45 186.8 217 52.1
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 1.7e-44 183.7 280 44.3
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 3.7e-44 182.6 221 52.5
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 1.1e-43 181.0 238 47.5
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.4e-43 180.6 230 49.6
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 3.1e-43 179.5 230 50.9
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 7.7e-42 174.9 221 50.2
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 1.0e-41 174.5 219 49.3
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 1.7e-41 173.7 171 58.5
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 2.3e-41 173.3 230 50.0
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.9e-40 170.2 184 56.0
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 3.3e-40 169.5 229 47.2
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 1.6e-39 167.2 236 47.9
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 6.1e-39 165.2 230 46.5
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 2.3e-38 163.3 225 48.0
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 6.8e-38 161.8 243 49.4
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 9.8e-37 157.9 246 45.9
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 8.3e-36 154.8 246 45.1
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 1.8e-35 153.7 245 43.7
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 7.0e-35 151.8 172 52.3
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 1.2e-34 151.0 241 45.2
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 2.0e-34 150.2 245 44.9
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 2.7e-34 149.8 246 43.9
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 2.7e-34 149.8 236 46.2
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 3.5e-34 149.4 243 44.4
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 3.5e-34 149.4 245 44.9
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 2.9e-33 146.4 245 44.1
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 2.9e-33 146.4 245 44.1
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 2.9e-33 146.4 245 44.1
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 2.9e-33 146.4 242 44.6
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 2.5e-32 143.3 242 43.4
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 2.5e-32 143.3 242 43.4
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 3.3e-32 142.9 238 44.1
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 4.3e-32 142.5 240 44.2
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 7.3e-32 141.7 238 43.3
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 7.3e-32 141.7 231 42.9
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 8.0e-31 138.3 229 44.5
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 8.0e-31 138.3 232 43.1
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 1.4e-30 137.5 248 42.3
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 3.1e-30 136.3 230 43.5
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 5.2e-30 135.6 226 42.9
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.5e-29 134.0 236 41.5
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 2.6e-29 133.3 242 43.0
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 1.3e-28 131.0 116 57.8
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.4e-27 127.5 211 44.1
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 5.4e-27 125.6 231 39.0
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 8.6e-25 118.2 167 45.5
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.1e-24 117.9 219 40.2
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 1.5e-24 117.5 155 47.7
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 1.4e-22 110.9 276 33.3
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 1.5e-21 107.5 141 43.3
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 6.4e-20 102.1 164 44.5
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 1.1e-19 101.3 192 37.5
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 1.1e-19 101.3 72 72.2
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 4.6e-18 95.9 130 43.8
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 1.3e-17 94.4 65 69.2
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 1.7e-17 94.0 72 69.4
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.1e-16 91.3 112 41.1
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 1.8e-14 84.0 78 59.0
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 5.2e-14 82.4 117 47.9
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 1.9e-11 73.9 69 50.7
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 6.0e-10 68.9 112 35.7
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 5.1e-09 65.9 48 68.8
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 5.1e-09 65.9 112 35.7
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 4.3e-08 62.8 44 68.2
AagrBONN_evm.TU.Sc2ySwM_117.2262 Anthoceros agrestis HOM05D003929 ORTHO05D004499 6.8e-06 55.5 70 44.3
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 6.8e-06 55.5 221 29.4


User provided reference genes

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