Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A429T53 Lonicera japonica HOM05D005975 ORTHO05D007373 1.8e-27 125.2 63 100.0
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 5.9e-10 67.0 50 64.0
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 7.7e-10 66.6 39 79.5
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 1.0e-09 66.2 48 75.0
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 1.0e-09 66.2 50 64.0
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 1.3e-09 65.9 49 63.3
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 1.7e-09 65.5 42 71.4
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 1.7e-09 65.5 50 66.0
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 2.9e-09 64.7 40 77.5
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 2.9e-09 64.7 47 66.0
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 3.8e-09 64.3 47 68.1
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 5.0e-09 63.9 55 63.6
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 5.0e-09 63.9 49 69.4
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 5.0e-09 63.9 49 69.4
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 6.5e-09 63.5 56 57.1
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 8.5e-09 63.2 47 66.0
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 8.5e-09 63.2 42 71.4
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 8.5e-09 63.2 42 71.4
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 1.1e-08 62.8 38 78.9
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 1.1e-08 62.8 42 73.8
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 1.4e-08 62.4 50 60.0
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 1.4e-08 62.4 44 63.6
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 1.4e-08 62.4 42 71.4
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 1.9e-08 62.0 42 66.7
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 2.5e-08 61.6 39 71.8
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 3.2e-08 61.2 45 66.7
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 3.2e-08 61.2 40 72.5
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 4.2e-08 60.8 38 76.3
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 4.2e-08 60.8 38 76.3
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 4.2e-08 60.8 38 76.3
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 4.2e-08 60.8 47 66.0
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 5.5e-08 60.5 42 71.4
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 5.5e-08 60.5 50 60.0
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 7.2e-08 60.1 38 76.3
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 7.2e-08 60.1 47 61.7
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 7.2e-08 60.1 42 64.3
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 7.2e-08 60.1 45 64.4
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 1.2e-07 59.3 50 54.0
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 1.2e-07 59.3 48 56.2
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.2e-07 59.3 46 60.9
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 2.1e-07 58.5 51 54.9
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 2.1e-07 58.5 42 69.0
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 2.1e-07 58.5 42 61.9
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 2.1e-07 58.5 61 54.1
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 2.1e-07 58.5 40 70.0
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 2.1e-07 58.5 38 73.7
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 2.7e-07 58.2 45 66.7
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 2.7e-07 58.2 44 65.9
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 2.7e-07 58.2 48 58.3
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 3.6e-07 57.8 40 70.0
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 4.6e-07 57.4 40 67.5
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 4.6e-07 57.4 43 67.4
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 4.6e-07 57.4 43 67.4
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 4.6e-07 57.4 40 65.0
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 4.6e-07 57.4 45 64.4
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 6.1e-07 57.0 42 69.0
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 6.1e-07 57.0 40 70.0
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 6.1e-07 57.0 40 70.0
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 6.1e-07 57.0 40 70.0
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 7.9e-07 56.6 45 64.4
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 7.9e-07 56.6 45 64.4
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 7.9e-07 56.6 45 64.4
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 7.9e-07 56.6 45 64.4
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 1.0e-06 56.2 45 64.4
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 1.0e-06 56.2 50 54.0
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 1.4e-06 55.8 42 69.0
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.8e-06 55.5 43 58.1
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 1.8e-06 55.5 43 65.1
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 1.8e-06 55.5 36 75.0
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 3.0e-06 54.7 50 58.0
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 3.0e-06 54.7 50 52.0
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 3.9e-06 54.3 42 61.9
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 3.9e-06 54.3 43 60.5
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 3.9e-06 54.3 49 55.1
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 3.9e-06 54.3 35 71.4
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 6.7e-06 53.5 38 68.4
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 6.7e-06 53.5 43 67.4
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 6.7e-06 53.5 38 65.8
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 8.8e-06 53.1 33 69.7
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 8.8e-06 53.1 51 54.9
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 8.8e-06 53.1 51 54.9


User provided reference genes

Program Settings