Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A429T50 Lonicera japonica HOM05D007696 ORTHO05D009719 1.7e-106 389.4 206 100.0
QL10p022430 Quercus lobata HOM05D007696 ORTHO05D009719 7.2e-65 251.1 203 67.0
Actinidia39813 Actinidia chinensis HOM05D007696 ORTHO05D009719 1.2e-64 250.4 203 65.0
GSVIVG01008244001 Vitis vinifera HOM05D007696 ORTHO05D009719 2.1e-64 249.6 205 66.8
TWI81G0276 Tripterygium wilfordii HOM05D007696 ORTHO05D009719 5.7e-62 241.5 204 64.2
RcHm_v2.0_Chr7g0184691 Rosa chinensis HOM05D007696 ORTHO05D009719 1.7e-61 240.0 201 65.2
FAN13G0134 Fragaria x ananassa HOM05D007696 ORTHO05D009719 8.2e-61 237.7 204 63.2
FAN08G1182 Fragaria x ananassa HOM05D007696 ORTHO05D009719 1.1e-60 237.3 204 63.2
CiPaw.15G127500 Carya illinoinensis HOM05D007696 ORTHO05D009719 1.5e-59 233.4 203 62.1
FvH4_5g12640 Fragaria vesca HOM05D007696 ORTHO05D009719 2.0e-59 233.0 205 63.4
Dinv07368 Davidia involucrata HOM05D007696 ORTHO05D009719 5.9e-59 231.5 206 63.6
Cc04_g07460 Coffea canephora HOM05D007696 ORTHO05D009719 1.7e-58 229.9 204 61.8
Lsat_1_v5_gn_4_115821 Lactuca sativa HOM05D007696 ORTHO05D009719 2.9e-58 229.2 204 62.3
Manes.01G020300 Manihot esculenta HOM05D007696 ORTHO05D009719 5.0e-58 228.4 201 62.2
Atru.chr9.778 Acer truncatum HOM05D007696 ORTHO05D009719 4.2e-57 225.3 199 63.8
FAN18G3725 Fragaria x ananassa HOM05D007696 ORTHO05D009719 4.2e-57 225.3 205 62.4
COL.COLO4_16235 Corchorus olitorius HOM05D007696 ORTHO05D009719 1.4e-55 220.3 172 68.6
Cfa019805 Carpinus fangiana HOM05D007696 ORTHO05D009719 1.8e-55 219.9 197 61.4
vmacro17668 Vaccinium macrocarpon HOM05D007696 ORTHO05D009719 1.8e-55 219.9 205 59.5
ECA232G0656 Erigeron canadensis HOM05D007696 ORTHO05D009719 2.3e-55 219.5 204 57.8
Potri.015G049800 Populus trichocarpa HOM05D007696 ORTHO05D009719 3.0e-55 219.2 204 61.3
Lalb_Chr19g0140261 Lupinus albus HOM05D007696 ORTHO05D009719 6.7e-55 218.0 203 58.1
Gohir.D08G105400 Gossypium hirsutum HOM05D007696 ORTHO05D009719 8.8e-55 217.6 172 67.4
Gohir.A08G094200 Gossypium hirsutum HOM05D007696 ORTHO05D009719 1.1e-54 217.2 172 66.9
Gorai.004G112300 Gossypium raimondii HOM05D007696 ORTHO05D009719 1.1e-54 217.2 172 67.4
FAN04G2461 Fragaria x ananassa HOM05D007696 ORTHO05D009719 2.0e-54 216.5 217 57.1
Thecc.03G029300 Theobroma cacao HOM05D007696 ORTHO05D009719 1.3e-53 213.8 172 68.0
Duzib068G0054 Durio zibethinus HOM05D007696 ORTHO05D009719 1.4e-52 210.3 172 65.1
Prupe.5G218000 Prunus persica HOM05D007696 ORTHO05D009719 3.1e-52 209.1 205 56.6
Aqoxy3G03910 Aquilegia oxysepala HOM05D007696 ORTHO05D009719 7.0e-52 208.0 199 57.8
MD14G1222400 Malus domestica HOM05D007696 ORTHO05D009719 9.1e-52 207.6 201 57.7
Sc04g0003700 Simmondsia chinensis HOM05D007696 ORTHO05D009719 2.6e-51 206.1 199 54.8
CANSAT54G0455 Cannabis sativa HOM05D007696 ORTHO05D009719 2.9e-50 202.6 203 54.7
Oeu055893.1 Olea europaea HOM05D007696 ORTHO05D009719 5.0e-50 201.8 169 64.5
TAR622G0575 Trochodendron aralioides HOM05D007696 ORTHO05D009719 1.1e-49 200.7 172 61.6
Phvul.011G012300 Phaseolus vulgaris HOM05D007696 ORTHO05D009719 3.2e-49 199.1 203 55.7
CANSAT54G2838 Cannabis sativa HOM05D007696 ORTHO05D009719 4.2e-49 198.7 203 54.2
Ciclev10022427m.g Citrus clementina HOM05D007696 ORTHO05D009719 1.2e-48 197.2 172 62.8
AUR62032195 Chenopodium quinoa HOM05D007696 ORTHO05D009719 2.1e-48 196.4 204 53.4
arahy.Tifrunner.gnm1.ann1.ISQN6X Arachis hypogaea HOM05D007696 ORTHO05D009719 1.0e-47 194.1 203 55.7
Lj3g0018148 Lotus japonicus HOM05D007696 ORTHO05D009719 8.8e-47 191.0 203 54.7
MBI13_g27794_MAGBIO Magnolia biondii HOM05D007696 ORTHO05D009719 7.5e-46 188.0 191 54.5
HanXRQChr09g0269891 Helianthus annuus HOM05D007696 ORTHO05D009719 1.4e-44 183.7 220 48.2
AUR62036960 Chenopodium quinoa HOM05D007696 ORTHO05D009719 1.8e-44 183.3 204 52.0
VMungo1127G1702 Vigna mungo HOM05D007696 ORTHO05D009719 1.8e-44 183.3 203 53.2
Nn4g23733 Nelumbo nucifera HOM05D007696 ORTHO05D009719 5.3e-44 181.8 204 51.5
Eucgr.K02660 Eucalyptus grandis HOM05D007696 ORTHO05D009719 1.6e-43 180.3 178 54.5
PSO063G6876 Papaver somniferum HOM05D007696 ORTHO05D009719 2.0e-43 179.9 202 52.5
THA.LOC104821847 Tarenaya hassleriana HOM05D007696 ORTHO05D009719 2.0e-43 179.9 167 55.1
FAN18G2008 Fragaria x ananassa HOM05D007696 ORTHO05D009719 5.9e-43 178.3 231 48.9
BcaB01g01733 Brassica carinata HOM05D007696 ORTHO05D009719 3.8e-42 175.6 167 54.5
TPR.G30177 Trifolium pratense HOM05D007696 ORTHO05D009719 2.5e-41 172.9 193 51.3
arahy.Tifrunner.gnm1.ann1.2ZW1BF Arachis hypogaea HOM05D007696 ORTHO05D009719 4.2e-41 172.2 238 46.6
Thhalv10027967m.g Eutrema salsugineum HOM05D007696 ORTHO05D009719 2.7e-40 169.5 167 53.9
Sp7g03680 Schrenkiella parvula HOM05D007696 ORTHO05D009719 8.0e-40 167.9 167 53.3
Hund10004 Selenicereus undatus HOM05D007696 ORTHO05D009719 4.0e-39 165.6 204 49.5
EL10Ac5g11256 Beta vulgaris HOM05D007696 ORTHO05D009719 1.2e-38 164.1 204 47.5
Glyma.09G227800 Glycine max HOM05D007696 ORTHO05D009719 1.2e-38 164.1 172 54.7
CAN.G438.120 Capsicum annuum HOM05D007696 ORTHO05D009719 1.8e-36 156.8 167 52.7
DCAR_011551 Daucus carota HOM05D007696 ORTHO05D009719 1.3e-34 150.6 106 73.6
AL2G14870 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 1.5e-33 147.1 167 48.5
AT1G61415 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 4.2e-33 145.6 167 48.5
AL2G14920 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 5.5e-33 145.2 167 48.5
CARHR051130 Cardamine hirsuta HOM05D007696 ORTHO05D009719 1.6e-32 143.7 167 47.3
Psat7g166400 Pisum sativum HOM05D007696 ORTHO05D009719 1.6e-32 143.7 178 47.8
Rhsim08G0136100 Rhododendron simsii HOM05D007696 ORTHO05D009719 2.1e-32 143.3 266 39.1
CSS0029722 Camellia sinensis var. sinensis HOM05D007696 ORTHO05D009719 4.7e-32 142.1 110 71.8
A09p26940 Brassica napus HOM05D007696 ORTHO05D009719 8.9e-31 137.9 167 46.7
BraA09t38264Z Brassica rapa HOM05D007696 ORTHO05D009719 8.9e-31 137.9 167 46.7
BcaC04g21230 Brassica carinata HOM05D007696 ORTHO05D009719 6.3e-29 131.7 167 44.3
C09p34110 Brassica napus HOM05D007696 ORTHO05D009719 6.3e-29 131.7 167 44.3
BolC9t56248H Brassica oleracea HOM05D007696 ORTHO05D009719 6.3e-29 131.7 167 44.3
Cpa.g.sc13.41 Carica papaya HOM05D007696 ORTHO05D009719 6.3e-29 131.7 106 67.0
Medtr0085s0020 Medicago truncatula HOM05D007696 ORTHO05D009719 9.2e-28 127.9 126 55.6
Zm00001eb347780 Zea mays HOM05D007696 ORTHO05D009719 1.3e-26 124.0 200 40.5
Carub.0002s0377 Capsella rubella HOM05D007696 ORTHO05D009719 1.7e-26 123.6 167 44.3
Hma1.2p1_0340F.1_g129840 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 5.0e-26 122.1 95 65.3
Hma1.2p1_0340F.1_g129846 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 5.0e-26 122.1 95 65.3
Hma1.2p1_0340F.1_g129830 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 6.1e-24 115.2 74 78.4
Hma1.2p1_0340F.1_g129843 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 6.1e-24 115.2 74 78.4
Os05g0275600 Oryza sativa ssp. japonica HOM05D007696 ORTHO05D009719 8.9e-23 111.3 203 37.9
CDE02G2124 Ceratophyllum demersum HOM05D007696 ORTHO05D009719 2.4e-20 103.2 105 54.3
Haze_18634 Corylus avellana HOM05D007696 ORTHO05D009719 5.0e-18 95.5 74 68.9
AT1G61450 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 1.2e-16 90.9 107 50.5
Sabra15G0078100 Salix brachista HOM05D007696 ORTHO05D009719 8.0e-16 88.2 111 45.9
Lsat_1_v5_gn_9_67701 Lactuca sativa HOM05D007696 ORTHO05D009719 3.1e-15 86.3 57 78.9
Aa31LG8G5380 Aethionema arabicum HOM05D007696 ORTHO05D009719 3.2e-12 76.3 148 34.5
VMungo0251G1113 Vigna mungo HOM05D007696 ORTHO05D009719 2.8e-08 63.2 70 52.9


User provided reference genes

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