Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A420T36 Lonicera japonica HOM05D003616 ORTHO05D004289 8.6e-87 323.6 156 100.0
Thecc.03G055800 Theobroma cacao HOM05D003616 ORTHO05D004289 9.3e-49 197.2 152 69.7
FvH4_5g17390 Fragaria vesca HOM05D003616 ORTHO05D004289 1.2e-48 196.8 142 71.8
Manes.14G171500 Manihot esculenta HOM05D003616 ORTHO05D004289 1.2e-48 196.8 152 68.4
Duzib084G0113 Durio zibethinus HOM05D003616 ORTHO05D004289 1.6e-48 196.4 152 69.1
HanXRQChr07g0204451 Helianthus annuus HOM05D003616 ORTHO05D004289 1.6e-48 196.4 153 68.6
CANSAT80G0515 Cannabis sativa HOM05D003616 ORTHO05D004289 2.1e-48 196.1 150 69.3
CsaV3_1G004390 Cucumis sativus L. HOM05D003616 ORTHO05D004289 2.1e-48 196.1 152 70.4
Sabra12G0032700 Salix brachista HOM05D003616 ORTHO05D004289 2.1e-48 196.1 155 67.7
Cpa.g.sc3.395 Carica papaya HOM05D003616 ORTHO05D004289 2.7e-48 195.7 152 69.7
Actinidia28138 Actinidia chinensis HOM05D003616 ORTHO05D004289 3.5e-48 195.3 152 68.4
CSS0013276 Camellia sinensis var. sinensis HOM05D003616 ORTHO05D004289 3.5e-48 195.3 152 68.4
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 3.5e-48 195.3 153 68.0
Migut.C00863 Erythranthe guttata HOM05D003616 ORTHO05D004289 4.6e-48 194.9 151 68.2
MD14G1236600 Malus domestica HOM05D003616 ORTHO05D004289 6.0e-48 194.5 152 67.8
Potri.012G046600 Populus trichocarpa HOM05D003616 ORTHO05D004289 7.9e-48 194.1 154 67.5
Glyma.07G102200 Glycine max HOM05D003616 ORTHO05D004289 1.0e-47 193.7 151 67.5
HanXRQChr14g0455291 Helianthus annuus HOM05D003616 ORTHO05D004289 1.0e-47 193.7 152 66.4
Lsat_1_v5_gn_2_108180 Lactuca sativa HOM05D003616 ORTHO05D004289 1.0e-47 193.7 149 67.8
MELO3C017361.2 Cucumis melo HOM05D003616 ORTHO05D004289 1.3e-47 193.4 152 69.7
Glyma.09G177000 Glycine max HOM05D003616 ORTHO05D004289 1.8e-47 193.0 151 66.9
Atru.chr9.1732 Acer truncatum HOM05D003616 ORTHO05D004289 2.3e-47 192.6 152 68.4
Gohir.A03G092600 Gossypium hirsutum HOM05D003616 ORTHO05D004289 3.0e-47 192.2 152 67.8
Gohir.D02G121200 Gossypium hirsutum HOM05D003616 ORTHO05D004289 3.0e-47 192.2 152 67.8
Gorai.005G133000 Gossypium raimondii HOM05D003616 ORTHO05D004289 3.0e-47 192.2 152 67.8
Nn4g24400 Nelumbo nucifera HOM05D003616 ORTHO05D004289 3.0e-47 192.2 152 67.8
TWI60G1662 Tripterygium wilfordii HOM05D003616 ORTHO05D004289 5.1e-47 191.4 153 66.0
Lj2g0015525 Lotus japonicus HOM05D003616 ORTHO05D004289 6.7e-47 191.0 152 66.4
MBI04_g06229_MAGBIO Magnolia biondii HOM05D003616 ORTHO05D004289 6.7e-47 191.0 152 67.1
Phvul.004G150900 Phaseolus vulgaris HOM05D003616 ORTHO05D004289 6.7e-47 191.0 151 66.2
QL10p029638 Quercus lobata HOM05D003616 ORTHO05D004289 6.7e-47 191.0 152 67.8
SGA_v2.0_scaffold92G28201 Striga asiatica HOM05D003616 ORTHO05D004289 6.7e-47 191.0 149 67.1
TPR.G8619 Trifolium pratense HOM05D003616 ORTHO05D004289 6.7e-47 191.0 152 67.1
arahy.Tifrunner.gnm1.ann1.0SP0C0 Arachis hypogaea HOM05D003616 ORTHO05D004289 8.7e-47 190.7 149 67.8
arahy.Tifrunner.gnm1.ann1.YQ88M5 Arachis hypogaea HOM05D003616 ORTHO05D004289 8.7e-47 190.7 149 67.8
Potri.015G038300 Populus trichocarpa HOM05D003616 ORTHO05D004289 8.7e-47 190.7 154 65.6
VMungo0464G1067 Vigna mungo HOM05D003616 ORTHO05D004289 8.7e-47 190.7 151 66.2
ClCG06G014280 Citrullus lanatus HOM05D003616 ORTHO05D004289 1.1e-46 190.3 152 68.4
Medtr6g069420 Medicago truncatula HOM05D003616 ORTHO05D004289 1.1e-46 190.3 154 64.9
Cfa019655 Carpinus fangiana HOM05D003616 ORTHO05D004289 1.5e-46 189.9 154 66.9
Lj5A158G70 Lonicera japonica HOM05D003616 ORTHO05D004289 1.5e-46 189.9 183 59.0
Haze_18855 Corylus avellana HOM05D003616 ORTHO05D004289 1.9e-46 189.5 154 65.6
TAR625G0790 Trochodendron aralioides HOM05D003616 ORTHO05D004289 1.9e-46 189.5 152 66.4
Sed0021008 Sechium edule HOM05D003616 ORTHO05D004289 2.5e-46 189.1 147 69.4
CiPaw.15G143500 Carya illinoinensis HOM05D003616 ORTHO05D004289 3.3e-46 188.7 152 67.1
Ciclev10008944m.g Citrus clementina HOM05D003616 ORTHO05D004289 3.3e-46 188.7 152 66.4
RcHm_v2.0_Chr7g0178351 Rosa chinensis HOM05D003616 ORTHO05D004289 3.3e-46 188.7 157 65.0
FAN04G2471 Fragaria x ananassa HOM05D003616 ORTHO05D004289 5.6e-46 188.0 157 64.3
FAN18G4023 Fragaria x ananassa HOM05D003616 ORTHO05D004289 5.6e-46 188.0 157 65.0
unitig_748.g7720 Utricularia gibba HOM05D003616 ORTHO05D004289 5.6e-46 188.0 151 66.2
Psat1g033600 Pisum sativum HOM05D003616 ORTHO05D004289 7.4e-46 187.6 152 65.1
TAR629G1297 Trochodendron aralioides HOM05D003616 ORTHO05D004289 9.6e-46 187.2 152 66.4
Eucgr.B01000 Eucalyptus grandis HOM05D003616 ORTHO05D004289 1.3e-45 186.8 154 65.6
PGR083G0078 Punica granatum HOM05D003616 ORTHO05D004289 1.3e-45 186.8 152 65.1
Cc02_g37150 Coffea canephora HOM05D003616 ORTHO05D004289 1.6e-45 186.4 152 65.8
PSO541G0876 Papaver somniferum HOM05D003616 ORTHO05D004289 1.6e-45 186.4 153 64.7
PSO675G9362 Papaver somniferum HOM05D003616 ORTHO05D004289 1.6e-45 186.4 153 64.7
Sed0005025 Sechium edule HOM05D003616 ORTHO05D004289 1.6e-45 186.4 153 66.0
FAN08G3458 Fragaria x ananassa HOM05D003616 ORTHO05D004289 2.1e-45 186.0 157 63.7
Lalb_Chr14g0370571 Lupinus albus HOM05D003616 ORTHO05D004289 2.1e-45 186.0 149 65.1
Ca_25333_v3 Cicer arietinum L. HOM05D003616 ORTHO05D004289 2.8e-45 185.7 152 63.2
Solyc04g081740.3 Solanum lycopersicum HOM05D003616 ORTHO05D004289 2.8e-45 185.7 149 64.4
Sopen04g035370 Solanum pennellii HOM05D003616 ORTHO05D004289 2.8e-45 185.7 149 64.4
DCAR_003546 Daucus carota HOM05D003616 ORTHO05D004289 4.8e-45 184.9 152 64.5
TWI15G0798 Tripterygium wilfordii HOM05D003616 ORTHO05D004289 4.8e-45 184.9 153 64.1
MSTRG.24236 Avicennia marina HOM05D003616 ORTHO05D004289 6.2e-45 184.5 152 65.1
Thhalv10027850m.g Eutrema salsugineum HOM05D003616 ORTHO05D004289 6.2e-45 184.5 149 64.4
CAN.G311.50 Capsicum annuum HOM05D003616 ORTHO05D004289 1.1e-44 183.7 152 64.5
Gorai.009G193000 Gossypium raimondii HOM05D003616 ORTHO05D004289 1.4e-44 183.3 147 65.3
CARHR284720 Cardamine hirsuta HOM05D003616 ORTHO05D004289 2.4e-44 182.6 149 63.1
BcaC03g16480 Brassica carinata HOM05D003616 ORTHO05D004289 3.1e-44 182.2 149 63.8
A02p27080 Brassica napus HOM05D003616 ORTHO05D004289 3.1e-44 182.2 149 63.8
C02p42910 Brassica napus HOM05D003616 ORTHO05D004289 3.1e-44 182.2 149 63.8
BolC2t10330H Brassica oleracea HOM05D003616 ORTHO05D004289 3.1e-44 182.2 149 63.8
BraA02t07726Z Brassica rapa HOM05D003616 ORTHO05D004289 3.1e-44 182.2 149 63.8
Duzib093G0398 Durio zibethinus HOM05D003616 ORTHO05D004289 3.1e-44 182.2 149 64.4
Prupe.1G362400 Prunus persica HOM05D003616 ORTHO05D004289 3.1e-44 182.2 152 64.5
Thecc.08G048000 Theobroma cacao HOM05D003616 ORTHO05D004289 4.0e-44 181.8 149 64.4
AL8G19670 Arabidopsis lyrata HOM05D003616 ORTHO05D004289 5.3e-44 181.4 149 63.1
Gohir.A05G184900 Gossypium hirsutum HOM05D003616 ORTHO05D004289 5.3e-44 181.4 147 64.6
Rhsim06G0018600 Rhododendron simsii HOM05D003616 ORTHO05D004289 5.3e-44 181.4 146 65.1
Actinidia15440 Actinidia chinensis HOM05D003616 ORTHO05D004289 6.9e-44 181.0 155 61.9
Carub.0008s0714 Capsella rubella HOM05D003616 ORTHO05D004289 6.9e-44 181.0 149 62.4
CDE05G1955 Ceratophyllum demersum HOM05D003616 ORTHO05D004289 6.9e-44 181.0 148 65.5
Cc10_g01410 Coffea canephora HOM05D003616 ORTHO05D004289 6.9e-44 181.0 153 64.1
Gohir.D05G187700 Gossypium hirsutum HOM05D003616 ORTHO05D004289 6.9e-44 181.0 147 64.6
Oeu026133.1 Olea europaea HOM05D003616 ORTHO05D004289 6.9e-44 181.0 148 64.2
GSVIVG01008442001 Vitis vinifera HOM05D003616 ORTHO05D004289 6.9e-44 181.0 151 63.6
Cfa013983 Carpinus fangiana HOM05D003616 ORTHO05D004289 9.0e-44 180.6 149 63.8
Manes.18G011100 Manihot esculenta HOM05D003616 ORTHO05D004289 1.2e-43 180.3 149 62.4
Aqoxy2G03601 Aquilegia oxysepala HOM05D003616 ORTHO05D004289 1.5e-43 179.9 150 64.0
AT5G42150 Arabidopsis thaliana HOM05D003616 ORTHO05D004289 1.5e-43 179.9 149 62.4
Oeu007366.1 Olea europaea HOM05D003616 ORTHO05D004289 1.5e-43 179.9 141 66.0
CSS0016648 Camellia sinensis var. sinensis HOM05D003616 ORTHO05D004289 2.0e-43 179.5 155 61.9
MD08G1010100 Malus domestica HOM05D003616 ORTHO05D004289 2.0e-43 179.5 151 61.6
COL.COLO4_26116 Corchorus olitorius HOM05D003616 ORTHO05D004289 2.6e-43 179.1 149 63.1
Nitab4.5_0006505g0020 Nicotiana tabacum HOM05D003616 ORTHO05D004289 2.6e-43 179.1 149 63.1
BcaB04g19405 Brassica carinata HOM05D003616 ORTHO05D004289 3.4e-43 178.7 152 61.2
vmacro07569 Vaccinium macrocarpon HOM05D003616 ORTHO05D004289 3.4e-43 178.7 178 55.6
Zm00001eb086680 Zea mays HOM05D003616 ORTHO05D004289 3.4e-43 178.7 148 62.2
CiPaw.07G146600 Carya illinoinensis HOM05D003616 ORTHO05D004289 4.5e-43 178.3 149 64.4
Dinv39539 Davidia involucrata HOM05D003616 ORTHO05D004289 5.8e-43 177.9 152 61.8
ECA238G4543 Erigeron canadensis HOM05D003616 ORTHO05D004289 5.8e-43 177.9 148 62.8
QL02p012220 Quercus lobata HOM05D003616 ORTHO05D004289 5.8e-43 177.9 152 62.5
SGA_v2.0_scaffold19G08556 Striga asiatica HOM05D003616 ORTHO05D004289 5.8e-43 177.9 169 58.0
Peaxi162Scf00860g00047 Petunia axillaris HOM05D003616 ORTHO05D004289 7.6e-43 177.6 149 62.4
PSO170G1220 Papaver somniferum HOM05D003616 ORTHO05D004289 1.0e-42 177.2 152 61.8
PSO700G0251 Papaver somniferum HOM05D003616 ORTHO05D004289 1.3e-42 176.8 152 61.8
Sp7g08670 Schrenkiella parvula HOM05D003616 ORTHO05D004289 1.3e-42 176.8 149 61.7
Os04g0244400 Oryza sativa ssp. japonica HOM05D003616 ORTHO05D004289 1.7e-42 176.4 148 61.5
SalBow8G4338 Salvia bowleyana HOM05D003616 ORTHO05D004289 1.7e-42 176.4 159 58.5
Phvul.009G009900 Phaseolus vulgaris HOM05D003616 ORTHO05D004289 2.2e-42 176.0 148 61.5
Atru.chr13.252 Acer truncatum HOM05D003616 ORTHO05D004289 2.9e-42 175.6 149 63.1
Glyma.04G023200 Glycine max HOM05D003616 ORTHO05D004289 2.9e-42 175.6 148 61.5
HanXRQChr06g0183781 Helianthus annuus HOM05D003616 ORTHO05D004289 2.9e-42 175.6 148 59.5
Lj4A21T62 Lonicera japonica HOM05D003616 ORTHO05D004289 2.9e-42 175.6 152 61.2
Lalb_Chr08g0246201 Lupinus albus HOM05D003616 ORTHO05D004289 4.9e-42 174.9 148 60.1
Hund05170 Selenicereus undatus HOM05D003616 ORTHO05D004289 4.9e-42 174.9 152 60.5
SEGI_35058 Sequoiadendron giganteum HOM05D003616 ORTHO05D004289 6.5e-42 174.5 152 60.5
Hma1.2p1_0023F.1_g015660 Hydrangea macrophylla HOM05D003616 ORTHO05D004289 8.4e-42 174.1 152 61.2
VMungo1309G2159 Vigna mungo HOM05D003616 ORTHO05D004289 8.4e-42 174.1 148 60.8
Ciclev10001861m.g Citrus clementina HOM05D003616 ORTHO05D004289 1.1e-41 173.7 149 61.7
SGA_v2.0_scaffold25G11209 Striga asiatica HOM05D003616 ORTHO05D004289 1.1e-41 173.7 170 57.1
EL10Ac1g02157 Beta vulgaris HOM05D003616 ORTHO05D004289 1.4e-41 173.3 149 59.7
CANSAT25G0701 Cannabis sativa HOM05D003616 ORTHO05D004289 1.9e-41 172.9 152 59.2
Ca_15480_v3 Cicer arietinum L. HOM05D003616 ORTHO05D004289 1.9e-41 172.9 148 60.8
Eucgr.H00953 Eucalyptus grandis HOM05D003616 ORTHO05D004289 1.9e-41 172.9 148 61.5
Mapoly0126s0030 Marchantia polymorpha HOM05D003616 ORTHO05D004289 1.9e-41 172.9 150 58.0
Potri.005G242500 Populus trichocarpa HOM05D003616 ORTHO05D004289 1.9e-41 172.9 149 61.1
ATR0180G023 Amborella trichopoda HOM05D003616 ORTHO05D004289 2.5e-41 172.6 152 61.8
FvH4_2g38150 Fragaria vesca HOM05D003616 ORTHO05D004289 2.5e-41 172.6 152 61.2
FAN27G0470 Fragaria x ananassa HOM05D003616 ORTHO05D004289 2.5e-41 172.6 152 61.2
Lsat_1_v5_gn_2_9140 Lactuca sativa HOM05D003616 ORTHO05D004289 2.5e-41 172.6 148 59.5
Lj1g0017366 Lotus japonicus HOM05D003616 ORTHO05D004289 2.5e-41 172.6 148 60.1
arahy.Tifrunner.gnm1.ann1.MX1HG7 Arachis hypogaea HOM05D003616 ORTHO05D004289 4.2e-41 171.8 148 60.1
arahy.Tifrunner.gnm1.ann1.TXJ4LD Arachis hypogaea HOM05D003616 ORTHO05D004289 4.2e-41 171.8 148 60.1
Psat5g012880 Pisum sativum HOM05D003616 ORTHO05D004289 4.2e-41 171.8 148 60.8
Sc02g0008690 Simmondsia chinensis HOM05D003616 ORTHO05D004289 5.5e-41 171.4 152 58.6
Migut.N03175 Erythranthe guttata HOM05D003616 ORTHO05D004289 7.1e-41 171.0 152 59.9
Haze_22668 Corylus avellana HOM05D003616 ORTHO05D004289 9.3e-41 170.6 159 58.5
FAN15G3669 Fragaria x ananassa HOM05D003616 ORTHO05D004289 1.6e-40 169.9 152 59.9
RcHm_v2.0_Chr6g0303331 Rosa chinensis HOM05D003616 ORTHO05D004289 1.6e-40 169.9 152 59.9
GSVIVG01009954001 Vitis vinifera HOM05D003616 ORTHO05D004289 2.1e-40 169.5 152 59.2
ATR0626G339 Amborella trichopoda HOM05D003616 ORTHO05D004289 4.6e-40 168.3 151 57.6
Sabra05G0187700 Salix brachista HOM05D003616 ORTHO05D004289 1.0e-39 167.2 158 58.9
THA.LOC104798670 Tarenaya hassleriana HOM05D003616 ORTHO05D004289 1.0e-39 167.2 149 59.1
TWI12G0315 Tripterygium wilfordii HOM05D003616 ORTHO05D004289 1.0e-39 167.2 149 57.0
AUR62013931 Chenopodium quinoa HOM05D003616 ORTHO05D004289 1.3e-39 166.8 152 55.9
Medtr3g114070 Medicago truncatula HOM05D003616 ORTHO05D004289 1.3e-39 166.8 148 58.8
AUR62040567 Chenopodium quinoa HOM05D003616 ORTHO05D004289 1.8e-39 166.4 152 55.9
HPP92_015015 Vanilla planifolia HOM05D003616 ORTHO05D004289 2.3e-39 166.0 148 58.8
Aa31LG9G12310 Aethionema arabicum HOM05D003616 ORTHO05D004289 3.0e-39 165.6 149 59.1
PGR031G0359 Punica granatum HOM05D003616 ORTHO05D004289 1.1e-38 163.7 148 59.5
Ah.11g040000 Amaranthus hybridus HOM05D003616 ORTHO05D004289 1.9e-38 162.9 152 55.9
CsaV3_2G024290 Cucumis sativus L. HOM05D003616 ORTHO05D004289 2.5e-38 162.5 149 58.4
MELO3C011352.2 Cucumis melo HOM05D003616 ORTHO05D004289 5.7e-38 161.4 152 57.2
Sed0022788 Sechium edule HOM05D003616 ORTHO05D004289 7.4e-38 161.0 149 58.4
MD15G1010000 Malus domestica HOM05D003616 ORTHO05D004289 4.8e-37 158.3 149 57.0
Lsat_1_v5_gn_8_25101 Lactuca sativa HOM05D003616 ORTHO05D004289 1.4e-36 156.8 133 63.9
CBR_g28548 Chara braunii HOM05D003616 ORTHO05D004289 1.2e-35 153.7 147 55.1
SMO140G0111 Selaginella moellendorffii HOM05D003616 ORTHO05D004289 1.2e-35 153.7 169 50.9
Pp3c22_13980 Physcomitrium patens HOM05D003616 ORTHO05D004289 2.6e-35 152.5 154 51.9
Prupe.5G233700 Prunus persica HOM05D003616 ORTHO05D004289 7.7e-35 151.0 93 79.6
Pp3c19_15500 Physcomitrium patens HOM05D003616 ORTHO05D004289 2.5e-33 146.0 154 48.7
ClCG08G014130 Citrullus lanatus HOM05D003616 ORTHO05D004289 4.2e-33 145.2 149 55.0
Lalb_Chr22g0353551 Lupinus albus HOM05D003616 ORTHO05D004289 3.6e-32 142.1 93 75.3
Dinv17550 Davidia involucrata HOM05D003616 ORTHO05D004289 6.1e-32 141.4 93 75.3
vmacro17781 Vaccinium macrocarpon HOM05D003616 ORTHO05D004289 6.1e-32 141.4 92 77.2
Eucgr.H00955 Eucalyptus grandis HOM05D003616 ORTHO05D004289 3.0e-31 139.0 148 52.7
Sabra15G0037200 Salix brachista HOM05D003616 ORTHO05D004289 4.3e-30 135.2 91 72.5
Nn3g18380 Nelumbo nucifera HOM05D003616 ORTHO05D004289 3.2e-25 119.0 141 49.6
Sc10g0009170 Simmondsia chinensis HOM05D003616 ORTHO05D004289 5.5e-25 118.2 109 56.9
VMungo1309G0063 Vigna mungo HOM05D003616 ORTHO05D004289 9.4e-25 117.5 141 45.4
Oeu010273.1 Olea europaea HOM05D003616 ORTHO05D004289 1.0e-23 114.0 92 65.2
VMungo1309G1258 Vigna mungo HOM05D003616 ORTHO05D004289 6.7e-23 111.3 139 42.4
PRCOL_00004876 Prasinoderma coloniale HOM05D003616 ORTHO05D004289 2.0e-22 109.8 163 39.3
MCO10G259 Micromonas commoda HOM05D003616 ORTHO05D004289 8.2e-21 104.4 160 40.0
Prupe.1G007300 Prunus persica HOM05D003616 ORTHO05D335316 5.3e-12 75.1 82 50.0
TPR.G243 Trifolium pratense HOM05D003616 ORTHO05D004289 9.1e-12 74.3 51 68.6
Actinidia17002 Actinidia chinensis HOM05D003616 ORTHO05D004289 1.2e-11 73.9 59 59.3
Oeu051168.1 Olea europaea HOM05D003616 ORTHO05D004289 1.2e-11 73.9 39 89.7
TPR.G38175 Trifolium pratense HOM05D003616 ORTHO05D004289 7.7e-11 71.2 65 53.8
FAN07G0700 Fragaria x ananassa HOM05D003616 ORTHO05D205289 4.2e-09 65.5 32 90.6
Sabra15G0037100 Salix brachista HOM05D003616 ORTHO05D004289 1.6e-08 63.5 36 80.6
vmacro17780 Vaccinium macrocarpon HOM05D003616 ORTHO05D004289 3.6e-08 62.4 30 90.0
Cre07.g319100 Chlamydomonas reinhardtii HOM05D003616 ORTHO05D004289 8.8e-07 57.8 205 24.4


User provided reference genes

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