Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A412T44 Lonicera japonica HOM05D006487 ORTHO05D007982 8.3e-188 660.2 332 100.0
Dinv03426 Davidia involucrata HOM05D006487 ORTHO05D007982 4.1e-94 349.0 326 62.6
Hma1.2p1_0989F.1_g244820 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 8.5e-92 341.3 328 61.3
Oeu023551.1 Olea europaea HOM05D006487 ORTHO05D007982 3.2e-83 312.8 327 56.9
Actinidia34682 Actinidia chinensis HOM05D006487 ORTHO05D007982 5.5e-83 312.0 326 56.7
TAR629G0717 Trochodendron aralioides HOM05D006487 ORTHO05D007982 9.4e-83 311.2 345 55.7
Nitab4.5_0003040g0090 Nicotiana tabacum HOM05D006487 ORTHO05D007982 1.6e-82 310.5 326 54.0
MSTRG.23212 Avicennia marina HOM05D006487 ORTHO05D007982 3.7e-79 299.3 327 52.9
Nitab4.5_0000782g0060 Nicotiana tabacum HOM05D006487 ORTHO05D007982 3.7e-79 299.3 330 52.4
SGA_v2.0_scaffold90G27746 Striga asiatica HOM05D006487 ORTHO05D007982 8.2e-79 298.1 326 54.3
Solyc03g098620.3 Solanum lycopersicum HOM05D006487 ORTHO05D007982 1.1e-78 297.7 327 52.6
CAN.G929.21 Capsicum annuum HOM05D006487 ORTHO05D007982 2.4e-78 296.6 331 50.8
Peaxi162Scf00171g00242 Petunia axillaris HOM05D006487 ORTHO05D007982 4.5e-77 292.4 325 52.3
Thecc.05G197400 Theobroma cacao HOM05D006487 ORTHO05D007982 1.0e-76 291.2 343 52.8
TWI81G0553 Tripterygium wilfordii HOM05D006487 ORTHO05D007982 1.7e-76 290.4 343 51.0
PGSC0003DMG400010175 Solanum tuberosum HOM05D006487 ORTHO05D007982 2.2e-76 290.0 327 50.8
Lsat_1_v5_gn_0_10541 Lactuca sativa HOM05D006487 ORTHO05D007982 3.2e-75 286.2 331 52.6
Sopen03g029330 Solanum pennellii HOM05D006487 ORTHO05D007982 3.2e-75 286.2 327 50.8
Gohir.A08G225300 Gossypium hirsutum HOM05D006487 ORTHO05D007982 5.5e-75 285.4 340 52.9
DCAR_011682 Daucus carota HOM05D006487 ORTHO05D007982 9.4e-75 284.6 322 52.5
Migut.O00267 Erythranthe guttata HOM05D006487 ORTHO05D007982 3.6e-74 282.7 326 53.7
SalBow5G2999 Salvia bowleyana HOM05D006487 ORTHO05D007982 1.4e-73 280.8 339 53.7
Gorai.004G262200 Gossypium raimondii HOM05D006487 ORTHO05D007982 1.8e-73 280.4 340 52.9
Gohir.D08G245700 Gossypium hirsutum HOM05D006487 ORTHO05D007982 2.3e-73 280.0 340 52.6
CANSAT64G1132 Cannabis sativa HOM05D006487 ORTHO05D007982 3.0e-73 279.6 342 52.9
Glyma.16G213000 Glycine max HOM05D006487 ORTHO05D007982 4.8e-71 272.3 346 50.3
VMungo0464G1082 Vigna mungo HOM05D006487 ORTHO05D007982 4.8e-71 272.3 329 51.4
Glyma.09G164600 Glycine max HOM05D006487 ORTHO05D007982 6.3e-71 271.9 342 49.4
QL10p034099 Quercus lobata HOM05D006487 ORTHO05D007982 8.3e-71 271.6 346 50.9
Potri.004G069400 Populus trichocarpa HOM05D006487 ORTHO05D007982 1.1e-70 271.2 337 51.9
Phvul.004G139000 Phaseolus vulgaris HOM05D006487 ORTHO05D007982 1.4e-70 270.8 336 49.1
Ca_11836_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 1.8e-70 270.4 323 50.8
Haze_18332 Corylus avellana HOM05D006487 ORTHO05D007982 2.4e-70 270.0 361 46.8
HanXRQChr15g0492111 Helianthus annuus HOM05D006487 ORTHO05D007982 5.4e-70 268.9 327 52.3
Prupe.5G243800 Prunus persica HOM05D006487 ORTHO05D007982 9.1e-70 268.1 340 51.2
Manes.02G218400 Manihot esculenta HOM05D006487 ORTHO05D007982 3.5e-69 266.2 343 50.1
arahy.Tifrunner.gnm1.ann1.FG107U Arachis hypogaea HOM05D006487 ORTHO05D007982 4.5e-69 265.8 344 48.8
RcHm_v2.0_Chr7g0177071 Rosa chinensis HOM05D006487 ORTHO05D007982 4.5e-69 265.8 352 49.7
Nn4g25081 Nelumbo nucifera HOM05D006487 ORTHO05D007982 2.3e-68 263.5 333 50.8
COL.COLO4_24904 Corchorus olitorius HOM05D006487 ORTHO05D007982 5.0e-68 262.3 326 49.4
arahy.Tifrunner.gnm1.ann1.49K0I5 Arachis hypogaea HOM05D006487 ORTHO05D007982 3.3e-67 259.6 342 48.8
Psat1g121120 Pisum sativum HOM05D006487 ORTHO05D007982 4.2e-67 259.2 320 50.0
GSVIVG01027119001 Vitis vinifera HOM05D006487 ORTHO05D007982 7.2e-67 258.5 331 49.8
Lj2g0009690 Lotus japonicus HOM05D006487 ORTHO05D007982 1.6e-66 257.3 343 47.2
Sabra04G0046600 Salix brachista HOM05D006487 ORTHO05D007982 3.6e-66 256.1 371 47.2
Rhsim08G0124800 Rhododendron simsii HOM05D006487 ORTHO05D007982 6.1e-66 255.4 458 41.5
vmacro17744 Vaccinium macrocarpon HOM05D006487 ORTHO05D007982 5.2e-65 252.3 286 50.0
FvH4_5g18410 Fragaria vesca HOM05D006487 ORTHO05D007982 6.8e-65 251.9 342 47.7
MBI06_g27513_MAGBIO Magnolia biondii HOM05D006487 ORTHO05D007982 6.8e-65 251.9 341 45.5
Medtr6g077860 Medicago truncatula HOM05D006487 ORTHO05D007982 1.2e-64 251.1 333 48.0
Lalb_Chr22g0353991 Lupinus albus HOM05D006487 ORTHO05D007982 1.5e-64 250.8 331 47.7
Ciclev10020398m.g Citrus clementina HOM05D006487 ORTHO05D007982 2.2e-63 246.9 342 47.7
PSO782G2052 Papaver somniferum HOM05D006487 ORTHO05D007982 3.7e-63 246.1 340 46.8
PSO063G4419 Papaver somniferum HOM05D006487 ORTHO05D007982 1.1e-62 244.6 337 46.6
PGR083G2465 Punica granatum HOM05D006487 ORTHO05D007982 1.8e-62 243.8 326 46.0
MD14G1245900 Malus domestica HOM05D006487 ORTHO05D007982 5.9e-61 238.8 338 45.3
Aqoxy3G04297 Aquilegia oxysepala HOM05D006487 ORTHO05D007982 1.3e-60 237.7 330 46.7
FAN13G0937 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.1e-59 234.6 334 44.9
Cc04_g08450 Coffea canephora HOM05D006487 ORTHO05D007982 5.6e-59 232.3 354 45.5
Atru.chr9.84 Acer truncatum HOM05D006487 ORTHO05D007982 7.3e-59 231.9 230 53.9
AL1G54980 Arabidopsis lyrata HOM05D006487 ORTHO05D007982 1.6e-58 230.7 336 44.3
CARHR037990 Cardamine hirsuta HOM05D006487 ORTHO05D007982 1.8e-57 227.3 334 42.8
AUR62033020 Chenopodium quinoa HOM05D006487 ORTHO05D007982 3.0e-57 226.5 336 44.6
AUR62040775 Chenopodium quinoa HOM05D006487 ORTHO05D007982 1.5e-56 224.2 248 53.2
Carub.0001s3750 Capsella rubella HOM05D006487 ORTHO05D007982 2.0e-56 223.8 339 43.1
MELO3C002168.2 Cucumis melo HOM05D006487 ORTHO05D007982 2.6e-56 223.4 331 44.4
Sc07g0007560 Simmondsia chinensis HOM05D006487 ORTHO05D007982 3.4e-56 223.0 332 46.1
Hund22367 Selenicereus undatus HOM05D006487 ORTHO05D007982 4.4e-56 222.6 252 49.6
FAN08G3399 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.3e-55 221.1 344 43.9
Thhalv10011620m.g Eutrema salsugineum HOM05D006487 ORTHO05D007982 1.7e-55 220.7 339 41.9
Sed0005317 Sechium edule HOM05D006487 ORTHO05D007982 2.2e-55 220.3 334 43.7
TPR.G19888 Trifolium pratense HOM05D006487 ORTHO05D007982 3.7e-55 219.5 288 48.3
CsaV3_1G007510 Cucumis sativus L. HOM05D006487 ORTHO05D007982 7.0e-54 215.3 325 44.9
AT1G48380 Arabidopsis thaliana HOM05D006487 ORTHO05D007982 1.6e-53 214.2 343 42.0
BcaB04g17434 Brassica carinata HOM05D006487 ORTHO05D007982 1.6e-53 214.2 336 42.3
FAN18G0592 Fragaria x ananassa HOM05D006487 ORTHO05D007982 7.8e-53 211.8 336 42.6
ATR0618G270 Amborella trichopoda HOM05D006487 ORTHO05D007982 1.7e-52 210.7 341 40.8
Cpa.g.sc168.16 Carica papaya HOM05D006487 ORTHO05D007982 1.7e-52 210.7 223 53.4
Sp1g35330 Schrenkiella parvula HOM05D006487 ORTHO05D007982 1.7e-52 210.7 336 40.2
BcaC07g37138 Brassica carinata HOM05D006487 ORTHO05D007982 6.6e-52 208.8 341 41.9
C08p05120 Brassica napus HOM05D006487 ORTHO05D007982 8.6e-52 208.4 343 41.1
BolC8t47322H Brassica oleracea HOM05D006487 ORTHO05D007982 1.5e-51 207.6 340 41.8
A08p04750 Brassica napus HOM05D006487 ORTHO05D007982 2.5e-51 206.8 339 41.9
BraA08t32504Z Brassica rapa HOM05D006487 ORTHO05D007982 2.5e-51 206.8 339 41.9
EL10Ac8g19478 Beta vulgaris HOM05D006487 ORTHO05D007982 3.3e-51 206.5 308 43.8
THA.LOC104820327 Tarenaya hassleriana HOM05D006487 ORTHO05D007982 4.3e-51 206.1 344 41.6
ClCG01G014820 Citrullus lanatus HOM05D006487 ORTHO05D007982 7.3e-51 205.3 222 53.2
Eucgr.H00648 Eucalyptus grandis HOM05D006487 ORTHO05D007982 1.2e-50 204.5 195 56.9
TAR629G1006 Trochodendron aralioides HOM05D006487 ORTHO05D007982 1.1e-49 201.4 112 85.7
FAN04G2664 Fragaria x ananassa HOM05D006487 ORTHO05D007982 4.0e-49 199.5 335 40.6
CDE04G1004 Ceratophyllum demersum HOM05D006487 ORTHO05D007982 5.2e-49 199.1 326 41.1
HPP92_014774 Vanilla planifolia HOM05D006487 ORTHO05D007982 1.1e-46 191.4 332 39.5
Os07g0172200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 7.0e-46 188.7 326 41.4
Prupe.4G244900 Prunus persica HOM05D006487 ORTHO05D007982 1.7e-44 184.1 268 45.5
Zm00001eb271770 Zea mays HOM05D006487 ORTHO05D007982 3.3e-43 179.9 321 38.6
Cfa017861 Carpinus fangiana HOM05D006487 ORTHO05D007982 4.7e-42 176.0 267 44.6
FAN09G4505 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.2e-40 171.4 110 70.9
Hma1.2p1_0989F.1_g244830 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 1.2e-40 171.4 185 53.0
FAN09G0815 Fragaria x ananassa HOM05D006487 ORTHO05D007982 2.4e-38 163.7 113 68.1
SEGI_16734 Sequoiadendron giganteum HOM05D006487 ORTHO05D007982 1.5e-35 154.5 348 32.5
CiPaw.16G073400 Carya illinoinensis HOM05D006487 ORTHO05D007982 1.6e-34 151.0 269 43.1
AagrBONN_evm.TU.Sc2ySwM_228.567 Anthoceros agrestis HOM05D006487 ORTHO05D007982 2.6e-32 143.7 253 34.4
Mapoly0080s0074 Marchantia polymorpha HOM05D006487 ORTHO05D007982 3.8e-31 139.8 290 34.1
SMO117G0078 Selaginella moellendorffii HOM05D006487 ORTHO05D007982 1.1e-30 138.3 105 58.1
Pp3c5_25480 Physcomitrium patens HOM05D006487 ORTHO05D007982 1.9e-30 137.5 374 29.9
Aa31LG10G5380 Aethionema arabicum HOM05D006487 ORTHO05D007982 6.0e-29 132.5 268 35.4
Pp3c25_9140 Physcomitrium patens HOM05D006487 ORTHO05D007982 9.6e-27 125.2 295 32.2
Os06g0730200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 4.0e-25 119.8 87 66.7
CSS0035874 Camellia sinensis var. sinensis HOM05D006487 ORTHO05D007982 6.4e-23 112.5 203 41.4
Ca_30285_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 1.9e-22 110.9 174 46.6
Prupe.2G315400 Prunus persica HOM05D006487 ORTHO05D007982 1.9e-22 110.9 220 39.5
ECA232G2176 Erigeron canadensis HOM05D006487 ORTHO05D007982 1.5e-16 91.3 183 39.3
CBR_g34174 Chara braunii HOM05D006487 ORTHO05D007982 1.3e-15 88.2 60 60.0
TPR.G27400 Trifolium pratense HOM05D006487 ORTHO05D007982 2.1e-13 80.9 51 72.5
Ah.14g085790 Amaranthus hybridus HOM05D006487 ORTHO05D007982 1.1e-11 75.1 53 66.0
Cre13.g576500 Chlamydomonas reinhardtii HOM05D006487 ORTHO05D007982 2.5e-11 73.9 107 35.5
MCO12G143 Micromonas commoda HOM05D006487 ORTHO05D007982 4.3e-11 73.2 109 42.2
PRCOL_00006754 Prasinoderma coloniale HOM05D006487 ORTHO05D007982 7.4e-11 72.4 215 26.5
vmacro17743 Vaccinium macrocarpon HOM05D006487 ORTHO05D007982 1.4e-06 58.2 130 39.2


User provided reference genes

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