Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A408T85 Lonicera japonica HOM05D007297 ORTHO05D009352 8.0e-140 500.4 242 100.0
Dinv14179 Davidia involucrata HOM05D007297 ORTHO05D009352 7.5e-106 387.5 238 77.3
CSS0008013 Camellia sinensis var. sinensis HOM05D007297 ORTHO05D009352 1.1e-99 367.1 236 72.5
vmacro23445 Vaccinium macrocarpon HOM05D007297 ORTHO05D009352 5.4e-96 354.8 237 71.7
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 2.7e-95 352.4 236 68.6
Oeu032716.1 Olea europaea HOM05D007297 ORTHO05D009352 4.7e-92 341.7 238 68.5
TAR381G0094 Trochodendron aralioides HOM05D007297 ORTHO05D009352 6.2e-92 341.3 238 68.1
ClCG02G003330 Citrullus lanatus HOM05D007297 ORTHO05D009352 6.8e-91 337.8 241 68.0
Rhsim05G0044900 Rhododendron simsii HOM05D007297 ORTHO05D009352 8.9e-91 337.4 263 63.1
Duzib132G0252 Durio zibethinus HOM05D007297 ORTHO05D009352 3.4e-90 335.5 236 66.1
Nn5g31034 Nelumbo nucifera HOM05D007297 ORTHO05D009352 4.4e-90 335.1 241 65.1
Potri.004G207400 Populus trichocarpa HOM05D007297 ORTHO05D009352 7.6e-90 334.3 236 65.3
CiPaw.05G093700 Carya illinoinensis HOM05D007297 ORTHO05D009352 2.2e-89 332.8 238 68.5
MBI05_g18176_MAGBIO Magnolia biondii HOM05D007297 ORTHO05D009352 3.8e-89 332.0 237 65.8
MELO3C015706.2 Cucumis melo HOM05D007297 ORTHO05D009352 4.9e-89 331.6 240 68.3
DCAR_006267 Daucus carota HOM05D007297 ORTHO05D009352 9.3e-88 327.4 235 66.0
MD10G1142400 Malus domestica HOM05D007297 ORTHO05D009352 1.6e-87 326.6 236 62.3
CsaV3_7G002000 Cucumis sativus L. HOM05D007297 ORTHO05D009352 2.7e-87 325.9 240 67.1
Thecc.02G146900 Theobroma cacao HOM05D007297 ORTHO05D009352 4.6e-87 325.1 236 64.4
Cfa010687 Carpinus fangiana HOM05D007297 ORTHO05D009352 6.0e-87 324.7 234 68.4
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 6.0e-87 324.7 242 63.6
MD05G1140800 Malus domestica HOM05D007297 ORTHO05D009352 1.0e-86 323.9 233 61.4
FAN15G2550 Fragaria x ananassa HOM05D007297 ORTHO05D009352 1.3e-86 323.6 237 62.9
FAN27G2312 Fragaria x ananassa HOM05D007297 ORTHO05D009352 1.7e-86 323.2 237 62.9
CSS0007337 Camellia sinensis var. sinensis HOM05D007297 ORTHO05D009352 2.3e-86 322.8 237 65.4
Ciclev10028691m.g Citrus clementina HOM05D007297 ORTHO05D009352 2.3e-86 322.8 237 64.6
Sed0028195 Sechium edule HOM05D007297 ORTHO05D009352 2.3e-86 322.8 238 67.2
CANSAT25G3874 Cannabis sativa HOM05D007297 ORTHO05D009352 3.0e-86 322.4 237 65.0
RcHm_v2.0_Chr6g0281021 Rosa chinensis HOM05D007297 ORTHO05D009352 8.7e-86 320.9 236 64.0
Aqoxy5G00964 Aquilegia oxysepala HOM05D007297 ORTHO05D009352 1.1e-85 320.5 236 65.7
FvH4_2g16900 Fragaria vesca HOM05D007297 ORTHO05D009352 1.1e-85 320.5 236 62.3
PSO170G5512 Papaver somniferum HOM05D007297 ORTHO05D009352 1.1e-85 320.5 236 63.6
Lj5g0024553 Lotus japonicus HOM05D007297 ORTHO05D009352 2.5e-85 319.3 237 63.7
HanXRQChr16g0515151 Helianthus annuus HOM05D007297 ORTHO05D009352 2.1e-84 316.2 239 63.2
QL11p056524 Quercus lobata HOM05D007297 ORTHO05D009352 2.1e-84 316.2 236 65.7
arahy.Tifrunner.gnm1.ann1.114EL0 Arachis hypogaea HOM05D007297 ORTHO05D009352 3.6e-84 315.5 238 65.1
TWI79G0145 Tripterygium wilfordii HOM05D007297 ORTHO05D009352 3.6e-84 315.5 236 61.9
ECA233G4247 Erigeron canadensis HOM05D007297 ORTHO05D009352 4.8e-84 315.1 238 61.8
EL10Ac9g21544 Beta vulgaris HOM05D007297 ORTHO05D009352 6.2e-84 314.7 237 61.6
Sopen10g027070 Solanum pennellii HOM05D007297 ORTHO05D009352 6.2e-84 314.7 242 61.6
PGSC0003DMG400016829 Solanum tuberosum HOM05D007297 ORTHO05D009352 1.1e-83 313.9 242 61.2
Solyc10g074580.2 Solanum lycopersicum HOM05D007297 ORTHO05D009352 2.4e-83 312.8 242 61.6
AUR62013182 Chenopodium quinoa HOM05D007297 ORTHO05D009352 1.3e-81 307.0 237 60.3
AUR62010181 Chenopodium quinoa HOM05D007297 ORTHO05D009352 1.7e-81 306.6 237 60.8
Eucgr.H04994 Eucalyptus grandis HOM05D007297 ORTHO05D009352 4.9e-81 305.1 236 58.9
Glyma.10G244200 Glycine max HOM05D007297 ORTHO05D009352 6.4e-81 304.7 237 60.3
Ca_10853_v3 Cicer arietinum L. HOM05D007297 ORTHO05D009352 8.4e-81 304.3 237 62.0
PGR042G0917 Punica granatum HOM05D007297 ORTHO05D009352 8.4e-81 304.3 239 61.1
Manes.15G114700 Manihot esculenta HOM05D007297 ORTHO05D009352 1.4e-80 303.5 236 60.2
Gohir.D01G012700 Gossypium hirsutum HOM05D007297 ORTHO05D009352 1.9e-80 303.1 236 61.0
Gorai.002G014500 Gossypium raimondii HOM05D007297 ORTHO05D009352 1.9e-80 303.1 236 61.0
Lsat_1_v5_gn_8_120880 Lactuca sativa HOM05D007297 ORTHO05D009352 3.2e-80 302.4 239 61.9
Gohir.A01G011500 Gossypium hirsutum HOM05D007297 ORTHO05D009352 1.2e-79 300.4 236 61.0
Nitab4.5_0001700g0150 Nicotiana tabacum HOM05D007297 ORTHO05D009352 1.6e-79 300.1 245 59.2
COL.COLO4_33139 Corchorus olitorius HOM05D007297 ORTHO05D009352 2.7e-79 299.3 212 66.5
Hund06358 Selenicereus undatus HOM05D007297 ORTHO05D009352 2.7e-79 299.3 237 58.2
Peaxi162Scf00374g00734 Petunia axillaris HOM05D007297 ORTHO05D009352 3.5e-79 298.9 266 54.5
Phvul.007G061600 Phaseolus vulgaris HOM05D007297 ORTHO05D009352 1.0e-78 297.4 235 60.0
VMungo0720G0116 Vigna mungo HOM05D007297 ORTHO05D009352 1.7e-78 296.6 235 60.4
Psat6g204280 Pisum sativum HOM05D007297 ORTHO05D009352 2.3e-78 296.2 237 58.6
MD05G1140400 Malus domestica HOM05D007297 ORTHO05D009352 3.0e-78 295.8 236 57.6
Sc18g0005810 Simmondsia chinensis HOM05D007297 ORTHO05D009352 3.9e-78 295.4 236 59.7
Migut.N01363 Erythranthe guttata HOM05D007297 ORTHO05D009352 2.1e-76 289.7 244 59.4
arahy.Tifrunner.gnm1.ann1.F5MDAV Arachis hypogaea HOM05D007297 ORTHO05D009352 6.2e-76 288.1 238 62.2
Medtr1g102880 Medicago truncatula HOM05D007297 ORTHO05D009352 6.2e-76 288.1 237 58.2
MSTRG.27611 Avicennia marina HOM05D007297 ORTHO05D009352 1.3e-73 280.4 241 57.7
SalBow5G1065 Salvia bowleyana HOM05D007297 ORTHO05D009352 1.4e-72 276.9 241 60.6
Thhalv10025549m.g Eutrema salsugineum HOM05D007297 ORTHO05D009352 9.3e-72 274.2 236 56.4
SalBow5G0092 Salvia bowleyana HOM05D007297 ORTHO05D009352 2.1e-71 273.1 240 60.0
Ah.01g017630 Amaranthus hybridus HOM05D007297 ORTHO05D009352 2.7e-71 272.7 236 55.1
Actinidia32005 Actinidia chinensis HOM05D007297 ORTHO05D009352 4.6e-71 271.9 236 58.9
SGA_v2.0_scaffold98G29306 Striga asiatica HOM05D007297 ORTHO05D009352 6.0e-71 271.6 246 56.9
ATR0807G066 Amborella trichopoda HOM05D007297 ORTHO05D009352 6.7e-70 268.1 247 56.3
Sp7g37510 Schrenkiella parvula HOM05D007297 ORTHO05D009352 3.3e-69 265.8 236 55.9
AT4G38225 Arabidopsis thaliana HOM05D007297 ORTHO05D009352 1.6e-68 263.5 237 54.0
Carub.0007s0016 Capsella rubella HOM05D007297 ORTHO05D009352 2.1e-68 263.1 236 53.4
THA.LOC104804081 Tarenaya hassleriana HOM05D007297 ORTHO05D009352 6.2e-68 261.5 246 53.3
AL7G10130 Arabidopsis lyrata HOM05D002051 ORTHO05D002041 4.0e-67 258.8 244 52.0
Aa31LG6G16890 Aethionema arabicum HOM05D007297 ORTHO05D009352 2.0e-66 256.5 241 54.4
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 2.0e-66 256.5 269 53.2
CARHR294010 Cardamine hirsuta HOM05D007297 ORTHO05D009352 1.9e-64 250.0 237 53.6
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 4.2e-64 248.8 237 53.2
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 4.2e-64 248.8 237 53.2
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 4.6e-63 245.4 236 53.0
unitig_26.g9984 Utricularia gibba HOM05D007297 ORTHO05D009352 6.0e-63 245.0 239 54.4
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 5.1e-62 241.9 237 52.7
Cpa.g.sc60.2 Carica papaya HOM05D007297 ORTHO05D009352 5.1e-62 241.9 169 66.9
HPP92_012647 Vanilla planifolia HOM05D007297 ORTHO05D009352 2.4e-59 233.0 241 48.5
CDE05G3233 Ceratophyllum demersum HOM05D007297 ORTHO05D009352 2.9e-57 226.1 166 63.3
Os03g0128800 Oryza sativa ssp. japonica HOM05D007297 ORTHO05D009352 2.9e-57 226.1 249 47.8
Atru.chr5.3567 Acer truncatum HOM05D007297 ORTHO05D009352 5.5e-56 221.9 159 65.4
Hma1.2p1_0271F.1_g108750 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 9.3e-56 221.1 158 67.7
Zm00001eb002190 Zea mays HOM05D007297 ORTHO05D009352 2.2e-52 209.9 248 45.2
Hma1.2p1_1276F.1_g272150 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 6.9e-51 204.9 169 60.9
Hma1.2p1_1819F.1_g304100 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 4.4e-37 159.1 126 65.1
AagrBONN_evm.TU.Sc2ySwM_117.3353 Anthoceros agrestis HOM05D007297 ORTHO05D009352 5.7e-37 158.7 262 37.4
Pp3c17_19510 Physcomitrium patens HOM05D007297 ORTHO05D009352 3.1e-35 152.9 252 37.7
Mapoly0005s0259 Marchantia polymorpha HOM05D007297 ORTHO05D009352 5.9e-34 148.7 257 34.2
Cpa.g.sc2396.1 Carica papaya HOM05D007297 ORTHO05D009352 1.1e-32 144.4 100 68.0
Pp3c2_4700 Physcomitrium patens HOM05D007297 ORTHO05D009352 2.5e-32 143.3 261 34.5
Hma1.2p1_0422F.1_g150110 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 6.3e-28 128.6 132 53.0
Hma1.2p1_0367F.1_g137160 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 6.5e-25 118.6 89 67.4
CBR_g49409 Chara braunii HOM05D001007 ORTHO05D008005 1.2e-23 114.4 180 38.9
SMO356G0187 Selaginella moellendorffii HOM05D007297 ORTHO05D009352 8.3e-20 101.7 253 28.9
AL7G47220 Arabidopsis lyrata HOM05D007297 ORTHO05D009352 8.8e-14 81.6 100 45.0
MCO13G078 Micromonas commoda HOM05D007297 ORTHO05D009352 2.8e-07 60.1 227 25.1
MD11G1100600 Malus domestica HOM05D007297 ORTHO05D009352 8.0e-07 58.5 38 65.8


User provided reference genes

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