Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A408G74 Lonicera japonica HOM05D000731 ORTHO05D005852 5.3e-102 374.4 194 100.0
Ah.01g002680 Amaranthus hybridus HOM05D000731 ORTHO05D005852 6.4e-39 164.9 363 36.4
Lj2P954T10 Lonicera japonica HOM05D000731 ORTHO05D005852 1.9e-35 153.3 434 32.7
CSS0017514 Camellia sinensis var. sinensis HOM05D000731 ORTHO05D005852 7.3e-35 151.4 444 32.2
CSS0027182 Camellia sinensis var. sinensis HOM05D000731 ORTHO05D005852 7.3e-35 151.4 444 32.2
PGR142G3313 Punica granatum HOM05D000731 ORTHO05D005852 4.7e-34 148.7 444 32.4
ECA234G0940 Erigeron canadensis HOM05D000731 ORTHO05D005852 3.1e-33 146.0 440 32.3
VMungo0647G1129 Vigna mungo HOM05D000731 ORTHO05D005852 5.2e-33 145.2 431 31.3
FvH4_3g28940 Fragaria vesca HOM05D000731 ORTHO05D005852 6.8e-33 144.8 444 31.3
FAN21G2016 Fragaria x ananassa HOM05D000731 ORTHO05D005852 6.8e-33 144.8 444 31.3
FAN16G0394 Fragaria x ananassa HOM05D000731 ORTHO05D005852 8.9e-33 144.4 444 31.3
Cpa.g.sc1323.2 Carica papaya HOM05D000731 ORTHO05D005852 1.2e-32 144.1 438 31.5
CANSAT78G1548 Cannabis sativa HOM05D000731 ORTHO05D005852 2.6e-32 142.9 444 31.8
Glyma.17G000300 Glycine max HOM05D000731 ORTHO05D005852 3.4e-32 142.5 384 33.6
Duzib132G1140 Durio zibethinus HOM05D000731 ORTHO05D005852 9.8e-32 141.0 444 30.9
Rhsim05G0047000 Rhododendron simsii HOM05D000731 ORTHO05D005852 9.8e-32 141.0 444 31.1
Glyma.07G274200 Glycine max HOM05D000731 ORTHO05D005852 1.7e-31 140.2 442 30.8
Peaxi162Scf00839g00012 Petunia axillaris HOM05D000731 ORTHO05D005852 2.2e-31 139.8 444 30.0
Duzib248G0460 Durio zibethinus HOM05D000731 ORTHO05D005852 2.9e-31 139.4 444 30.6
MD02G1271000 Malus domestica HOM05D000731 ORTHO05D005852 2.9e-31 139.4 444 30.2
ClCG10G009170 Citrullus lanatus HOM05D000731 ORTHO05D005852 3.7e-31 139.0 444 31.1
Cc09_g04770 Coffea canephora HOM05D000731 ORTHO05D005852 4.9e-31 138.7 444 29.3
Gohir.D04G152300 Gossypium hirsutum HOM05D000731 ORTHO05D005852 4.9e-31 138.7 444 30.6
Gorai.012G139100 Gossypium raimondii HOM05D000731 ORTHO05D005852 4.9e-31 138.7 444 30.6
TAR369G1082 Trochodendron aralioides HOM05D000731 ORTHO05D005852 4.9e-31 138.7 442 31.2
vmacro17305 Vaccinium macrocarpon HOM05D000731 ORTHO05D005852 4.9e-31 138.7 444 30.4
Ciclev10028471m.g Citrus clementina HOM05D000731 ORTHO05D005852 6.4e-31 138.3 440 31.4
Peaxi162Scf00062g00107 Petunia axillaris HOM05D000731 ORTHO05D005852 6.4e-31 138.3 444 30.0
Prupe.1G563500 Prunus persica HOM05D000731 ORTHO05D005852 8.3e-31 137.9 444 30.4
Sed0024342 Sechium edule HOM05D000731 ORTHO05D005852 8.3e-31 137.9 444 31.1
Thecc.02G146200 Theobroma cacao HOM05D000731 ORTHO05D005852 1.1e-30 137.5 444 30.2
Nitab4.5_0000175g0010 Nicotiana tabacum HOM05D000731 ORTHO05D005852 1.4e-30 137.1 444 30.0
Nitab4.5_0002278g0020 Nicotiana tabacum HOM05D000731 ORTHO05D005852 1.4e-30 137.1 444 30.0
Atru.chr5.3557 Acer truncatum HOM05D000731 ORTHO05D005852 1.9e-30 136.7 441 31.5
MELO3C019026.2 Cucumis melo HOM05D000731 ORTHO05D005852 3.2e-30 136.0 444 30.6
Lj3g0020438 Lotus japonicus HOM05D000731 ORTHO05D005852 3.2e-30 136.0 444 30.0
GSVIVG01023870001 Vitis vinifera HOM05D000109 ORTHO05D000520 3.2e-30 136.0 181 48.6
Cfa005622 Carpinus fangiana HOM05D000731 ORTHO05D005852 4.1e-30 135.6 444 30.2
FAN25G0665 Fragaria x ananassa HOM05D000731 ORTHO05D005852 4.1e-30 135.6 181 48.1
QL05p058753 Quercus lobata HOM05D000731 ORTHO05D005852 4.1e-30 135.6 440 30.9
AUR62015047 Chenopodium quinoa HOM05D000731 ORTHO05D005852 1.2e-29 134.0 444 29.7
AUR62017506 Chenopodium quinoa HOM05D000731 ORTHO05D005852 1.2e-29 134.0 444 29.7
Nn7g37219 Nelumbo nucifera HOM05D000731 ORTHO05D005852 1.2e-29 134.0 445 29.7
Lalb_Chr03g0033771 Lupinus albus HOM05D000731 ORTHO05D005852 1.6e-29 133.7 429 29.4
Sed0014694 Sechium edule HOM05D000731 ORTHO05D005852 1.6e-29 133.7 441 30.6
Solyc12g100130.1 Solanum lycopersicum HOM05D000731 ORTHO05D005852 1.6e-29 133.7 444 29.5
Sopen12g034760 Solanum pennellii HOM05D000731 ORTHO05D005852 1.6e-29 133.7 444 29.5
PGSC0003DMG400023853 Solanum tuberosum HOM05D000731 ORTHO05D005852 1.6e-29 133.7 444 29.5
TAR633G1916 Trochodendron aralioides HOM05D000731 ORTHO05D005852 1.6e-29 133.7 266 37.6
Nitab4.5_0001925g0030 Nicotiana tabacum HOM05D000731 ORTHO05D005852 2.1e-29 133.3 181 47.0
Potri.009G168200 Populus trichocarpa HOM05D000731 ORTHO05D005852 6.0e-29 131.7 444 30.2
CiPaw.01G113000 Carya illinoinensis HOM05D000731 ORTHO05D005852 7.8e-29 131.3 444 30.0
Nitab4.5_0010082g0030 Nicotiana tabacum HOM05D000731 ORTHO05D005852 1.0e-28 131.0 444 29.5
Sc08g0002180 Simmondsia chinensis HOM05D000731 ORTHO05D005852 1.0e-28 131.0 444 28.8
Hma1.2p1_0572F.1_g181050 Hydrangea macrophylla HOM05D000731 ORTHO05D005852 1.3e-28 130.6 441 29.7
Hund00092 Selenicereus undatus HOM05D000731 ORTHO05D005852 1.3e-28 130.6 173 47.4
Lsat_1_v5_gn_4_30520 Lactuca sativa HOM05D000731 ORTHO05D005852 1.7e-28 130.2 440 30.0
HanXRQChr17g0564061 Helianthus annuus HOM05D000731 ORTHO05D005852 2.3e-28 129.8 261 37.5
Oeu057293.1 Olea europaea HOM05D000731 ORTHO05D005852 3.9e-28 129.0 437 30.0
Rhsim13G0101000 Rhododendron simsii HOM05D000731 ORTHO05D005852 3.9e-28 129.0 429 30.1
Nitab4.5_0001925g0010 Nicotiana tabacum HOM05D000731 ORTHO05D005852 5.1e-28 128.6 444 29.3
Phvul.002G333800 Phaseolus vulgaris HOM05D000731 ORTHO05D005852 5.1e-28 128.6 174 47.7
Dinv06066 Davidia involucrata HOM05D000731 ORTHO05D005852 6.6e-28 128.3 181 47.0
Medtr4g030900 Medicago truncatula HOM05D000731 ORTHO05D005852 6.6e-28 128.3 442 29.0
Nitab4.5_0013627g0010 Nicotiana tabacum HOM05D000731 ORTHO05D005852 6.6e-28 128.3 444 29.3
Actinidia07189 Actinidia chinensis HOM05D000731 ORTHO05D005852 8.6e-28 127.9 175 47.4
CAN.G575.54 Capsicum annuum HOM05D000731 ORTHO05D005852 8.6e-28 127.9 179 45.3
Ca_22758_v3 Cicer arietinum L. HOM05D000731 ORTHO05D005852 8.6e-28 127.9 439 29.4
Psat7g227960 Pisum sativum HOM05D000731 ORTHO05D005852 8.6e-28 127.9 450 28.7
TWI79G0407 Tripterygium wilfordii HOM05D000731 ORTHO05D005852 8.6e-28 127.9 444 30.0
TPR.G34131 Trifolium pratense HOM05D000731 ORTHO05D005852 1.5e-27 127.1 439 29.2
Eucgr.I01531 Eucalyptus grandis HOM05D000731 ORTHO05D005852 1.9e-27 126.7 444 29.5
Gohir.D02G194000 Gossypium hirsutum HOM05D000731 ORTHO05D005852 2.5e-27 126.3 441 29.5
RhsimUnG0141400 Rhododendron simsii HOM05D000109 ORTHO05D005852 3.3e-27 125.9 181 46.4
Gorai.005G216800 Gossypium raimondii HOM05D000731 ORTHO05D005852 4.3e-27 125.6 441 29.3
Oeu000756.1 Olea europaea HOM05D000731 ORTHO05D005852 5.6e-27 125.2 437 29.5
THA.LOC104806247 Tarenaya hassleriana HOM05D000731 ORTHO05D005852 9.5e-27 124.4 434 29.3
MSTRG.11602 Avicennia marina HOM05D000731 ORTHO05D005852 1.6e-26 123.6 177 46.3
MBI05_g36634_MAGBIO Magnolia biondii HOM05D000731 ORTHO05D005852 1.6e-26 123.6 445 29.2
Gohir.A03G170900 Gossypium hirsutum HOM05D000731 ORTHO05D005852 2.8e-26 122.9 441 28.8
Migut.A00017 Erythranthe guttata HOM05D000731 ORTHO05D005852 4.7e-26 122.1 174 45.4
PSO063G1122 Papaver somniferum HOM05D000731 ORTHO05D005852 4.7e-26 122.1 439 28.7
PSO782G0947 Papaver somniferum HOM05D000731 ORTHO05D005852 4.7e-26 122.1 439 28.7
Migut.E01815 Erythranthe guttata HOM05D000731 ORTHO05D005852 6.2e-26 121.7 429 29.4
THA.LOC104812934 Tarenaya hassleriana HOM05D000731 ORTHO05D005852 8.1e-26 121.3 434 29.0
CDE01G0753 Ceratophyllum demersum HOM05D000731 ORTHO05D005852 2.3e-25 119.8 174 44.8
Os11g0186800 Oryza sativa ssp. japonica HOM05D000731 ORTHO05D005852 2.3e-25 119.8 431 28.3
Prupe.8G180300 Prunus persica HOM05D000731 ORTHO05D005852 2.3e-25 119.8 442 28.1
Thhalv10003416m.g Eutrema salsugineum HOM05D000731 ORTHO05D005852 4.0e-25 119.0 428 29.4
QL11p020039 Quercus lobata HOM05D000731 ORTHO05D005852 5.2e-25 118.6 179 44.1
COL.COLO4_34311 Corchorus olitorius HOM05D000731 ORTHO05D005852 8.9e-25 117.9 444 27.9
Sp2g09210 Schrenkiella parvula HOM05D000731 ORTHO05D005852 8.9e-25 117.9 427 29.5
unitig_32.g10880 Utricularia gibba HOM05D000731 ORTHO05D005852 1.2e-24 117.5 265 35.1
Zm00001eb051610 Zea mays HOM05D000731 ORTHO05D005852 1.5e-24 117.1 177 43.5
Carub.0008s0410 Capsella rubella HOM05D000731 ORTHO05D005852 4.4e-24 115.5 427 29.5
Os12g0180100 Oryza sativa ssp. japonica HOM05D000731 ORTHO05D005852 4.4e-24 115.5 174 44.3
AL8G15520 Arabidopsis lyrata HOM05D000731 ORTHO05D005852 5.8e-24 115.2 427 29.0
AT5G44370 Arabidopsis thaliana HOM05D000731 ORTHO05D005852 5.8e-24 115.2 427 29.0
BcaC06g31622 Brassica carinata HOM05D000731 ORTHO05D005852 5.8e-24 115.2 428 29.2
BcaC06g34560 Brassica carinata HOM05D000731 ORTHO05D005852 5.8e-24 115.2 428 29.0
C07p27170 Brassica napus HOM05D000731 ORTHO05D005852 5.8e-24 115.2 428 29.0
BolC7t43244H Brassica oleracea HOM05D000731 ORTHO05D005852 5.8e-24 115.2 428 29.0
HPP92_000326 Vanilla planifolia HOM05D000731 ORTHO05D005852 5.8e-24 115.2 435 28.0
A06p47220 Brassica napus HOM05D000731 ORTHO05D005852 9.9e-24 114.4 428 28.7
BraA06t27593Z Brassica rapa HOM05D000731 ORTHO05D005852 9.9e-24 114.4 428 28.7
FvH4_2g16800 Fragaria vesca HOM05D000731 ORTHO05D005852 2.9e-23 112.8 420 29.5
Aa31LG9G8760 Aethionema arabicum HOM05D000731 ORTHO05D005852 4.9e-23 112.1 432 28.9
RcHm_v2.0_Chr6g0280921 Rosa chinensis HOM05D000731 ORTHO05D005852 1.4e-22 110.5 420 29.8
CSS0043887 Camellia sinensis var. sinensis HOM05D000731 ORTHO05D005852 1.9e-22 110.2 179 41.9
FAN15G0272 Fragaria x ananassa HOM05D000731 ORTHO05D005852 1.9e-22 110.2 151 50.3
ECA233G3039 Erigeron canadensis HOM05D000731 ORTHO05D005852 3.2e-22 109.4 313 31.9
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 1.6e-21 107.1 419 28.2
ATR0626G249 Amborella trichopoda HOM05D000731 ORTHO05D005852 2.7e-21 106.3 176 40.3
HanXRQChr12g0381751 Helianthus annuus HOM05D000731 ORTHO05D005852 1.7e-20 103.6 313 29.4
Lsat_1_v5_gn_5_71761 Lactuca sativa HOM05D000731 ORTHO05D005852 1.7e-20 103.6 314 30.9
FAN24G1248 Fragaria x ananassa HOM05D000731 ORTHO05D005852 2.3e-20 103.2 415 28.9
VMungo0464G0806 Vigna mungo HOM05D000731 ORTHO05D005852 3.9e-20 102.4 110 57.3
SMO118G0038 Selaginella moellendorffii HOM05D000731 ORTHO05D005852 6.6e-20 101.7 178 37.1
VMungo0647G0077 Vigna mungo HOM05D000072 ORTHO05D000026 1.9e-19 100.1 132 48.5
Haze_10644 Corylus avellana HOM05D000731 ORTHO05D005852 2.5e-19 99.8 319 29.5
CSS0036501 Camellia sinensis var. sinensis HOM05D000731 ORTHO05D005852 3.3e-19 99.4 165 41.8
RcHm_v2.0_Chr5g0051801 Rosa chinensis HOM05D000731 ORTHO05D005852 3.3e-19 99.4 366 27.6
CsaV3_4G009320 Cucumis sativus L. HOM05D000731 ORTHO05D005852 4.3e-19 99.0 319 30.4
SEGI_20766 Sequoiadendron giganteum HOM05D000731 ORTHO05D005852 5.6e-19 98.6 175 37.7
Manes.17G005900 Manihot esculenta HOM05D000731 ORTHO05D005852 9.6e-19 97.8 366 27.3
BraA02t07876Z Brassica rapa HOM05D000731 ORTHO05D005852 2.1e-18 96.7 172 41.9
Dinv24336 Davidia involucrata HOM05D000219 ORTHO05D005852 2.1e-18 96.7 366 27.0
Pp3c12_3180 Physcomitrium patens HOM05D000731 ORTHO05D005852 2.1e-18 96.7 174 36.8
Mapoly0045s0073 Marchantia polymorpha HOM05D000731 ORTHO05D005852 8.1e-18 94.7 170 38.2
Gohir.A04G112000 Gossypium hirsutum HOM05D000731 ORTHO05D005852 1.2e-16 90.9 99 48.5
CDE03G0303 Ceratophyllum demersum HOM05D000731 ORTHO05D005852 1.5e-16 90.5 151 40.4
MBI14_g32929_MAGBIO Magnolia biondii HOM05D000731 ORTHO05D005852 9.9e-16 87.8 56 73.2
CARHR178760 Cardamine hirsuta HOM05D000731 ORTHO05D005852 2.9e-15 86.3 179 40.2
QL11p056440 Quercus lobata HOM05D000731 ORTHO05D005852 3.2e-14 82.8 56 73.2
Zm00001eb219200 Zea mays HOM05D000731 ORTHO05D005852 1.6e-13 80.5 52 75.0
QL11p056446 Quercus lobata HOM05D000731 ORTHO05D005852 2.7e-13 79.7 62 61.3
BcaC03g16661 Brassica carinata HOM05D000731 ORTHO05D005852 7.8e-13 78.2 128 46.9
BcaC03g16662 Brassica carinata HOM05D000731 ORTHO05D005852 7.8e-13 78.2 52 71.2
TAR369G0932 Trochodendron aralioides HOM05D000731 ORTHO05D005852 2.8e-10 69.7 63 61.9
Actinidia26329 Actinidia chinensis HOM05D000731 ORTHO05D005852 8.1e-10 68.2 90 47.8
AagrBONN_evm.TU.Sc2ySwM_344.1031 Anthoceros agrestis HOM05D000731 ORTHO05D005852 9.0e-09 64.7 81 48.1
BcaB07g30529 Brassica carinata HOM05D000731 ORTHO05D005852 1.5e-08 63.9 59 62.7
CBR_g19789 Chara braunii HOM05D000731 ORTHO05D005852 7.6e-08 61.6 102 38.2
Actinidia24151 Actinidia chinensis HOM05D000731 ORTHO05D005852 3.8e-07 59.3 34 82.4
Cre09.g399141 Chlamydomonas reinhardtii HOM05D000731 ORTHO05D005852 1.9e-06 57.0 109 34.9
Psat2g061720 Pisum sativum HOM05D000731 ORTHO05D005852 4.2e-06 55.8 84 35.7


User provided reference genes

Program Settings