Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 7.7e-188 661.8 898 100.0
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 9.6e-98 362.5 874 75.3
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 2.0e-95 354.8 875 68.9
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 1.9e-90 338.2 876 78.4
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 6.3e-89 333.2 873 78.1
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 5.1e-83 313.5 869 75.5
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 5.3e-80 303.5 874 75.7
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 6.7e-75 286.6 865 72.6
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 8.8e-75 286.2 871 74.3
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 2.2e-73 281.6 862 73.8
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 3.7e-73 280.8 878 76.7
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 7.0e-72 276.6 867 76.9
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 2.0e-71 275.0 867 68.6
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 4.5e-71 273.9 865 76.5
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.7e-70 271.9 861 75.8
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 1.7e-70 271.9 871 76.3
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 5.0e-70 270.4 866 69.3
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 6.5e-70 270.0 865 77.0
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 6.5e-70 270.0 872 75.0
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 4.2e-69 267.3 865 76.8
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 7.2e-69 266.5 871 70.0
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 1.2e-68 265.8 865 76.8
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 4.7e-68 263.8 873 75.9
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 7.4e-66 256.5 873 70.0
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 1.7e-65 255.4 867 74.9
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 2.2e-65 255.0 894 70.2
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 2.8e-65 254.6 870 74.9
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 6.3e-65 253.4 866 72.9
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 1.1e-64 252.7 865 75.0
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 7.0e-64 250.0 867 75.0
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 2.6e-63 248.1 870 70.9
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 4.0e-59 234.2 867 68.1
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 1.5e-58 232.3 875 68.9
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 7.5e-58 229.9 865 74.9
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 7.5e-58 229.9 865 73.4
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 7.5e-58 229.9 877 70.8
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 2.2e-57 228.4 876 64.7
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 3.7e-57 227.6 871 65.7
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 3.7e-57 227.6 871 65.7
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 4.8e-57 227.3 876 69.9
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 8.2e-57 226.5 873 72.1
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 1.1e-56 226.1 868 72.8
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 4.1e-56 224.2 873 69.6
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 1.2e-55 222.6 873 73.4
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 2.7e-55 221.5 873 73.1
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 3.5e-55 221.1 872 71.9
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 4.5e-55 220.7 873 76.2
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 5.9e-55 220.3 874 68.0
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 1.0e-54 219.5 873 73.1
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 1.0e-54 219.5 872 70.1
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 1.0e-54 219.5 885 61.8
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 1.3e-54 219.2 873 71.6
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 1.3e-54 219.2 870 63.6
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 2.2e-54 218.4 876 75.3
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 1.1e-53 216.1 878 66.1
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 1.9e-53 215.3 872 74.1
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 3.2e-53 214.5 878 65.4
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 4.2e-53 214.2 879 64.2
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 2.1e-52 211.8 870 70.0
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 2.1e-52 211.8 877 71.8
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 4.7e-52 210.7 871 73.0
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 4.7e-52 210.7 870 65.1
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 8.0e-52 209.9 879 67.8
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 1.0e-51 209.5 870 72.4
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 1.0e-51 209.5 877 71.2
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 1.8e-51 208.8 884 59.0
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 2.3e-51 208.4 882 69.8
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 2.3e-51 208.4 872 72.2
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 5.2e-51 207.2 850 73.6
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 5.7e-50 203.8 868 61.6
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 1.3e-49 202.6 876 62.4
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 1.8e-48 198.7 361 68.7
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 1.2e-47 196.1 854 66.4
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 3.5e-47 194.5 750 80.3
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 2.9e-46 191.4 831 71.5
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 5.0e-46 190.7 437 54.2
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 6.6e-46 190.3 361 67.9
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 1.1e-45 189.5 361 67.6
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 1.2e-44 186.0 883 60.5
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.2e-44 186.0 196 51.5
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 2.1e-44 185.3 831 71.5
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 1.5e-42 179.1 873 71.0
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 3.4e-42 177.9 377 62.9
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 1.7e-38 165.6 838 57.5
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 1.5e-37 162.5 877 63.9
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 5.6e-37 160.6 858 65.6
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 1.2e-36 159.5 360 63.1
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 1.6e-36 159.1 148 58.1
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 5.2e-35 154.1 377 61.3
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 1.5e-34 152.5 362 63.0
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.4e-32 146.0 861 70.6
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 8.6e-30 136.7 751 71.1
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 2.8e-28 131.7 144 49.3
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 3.1e-27 128.3 742 76.5
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 3.1e-27 128.3 153 52.3
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 9.2e-24 116.7 368 65.2
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 1.5e-21 109.4 375 55.5
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 1.9e-21 109.0 392 64.8
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 1.4e-19 102.8 144 66.0
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 1.5e-18 99.4 62 71.0
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 2.6e-18 98.6 362 55.0
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 7.5e-18 97.1 97 58.8
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 1.1e-16 93.2 172 31.4
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 1.3e-14 86.3 193 32.6
SEGI_20674 Sequoiadendron giganteum HOM05D007101 ORTHO05D008632 1.4e-08 66.2 65 50.8


User provided reference genes

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