Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 2.2e-102 375.9 230 100.0
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 1.2e-84 317.0 227 82.4
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 5.9e-84 314.7 227 82.4
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 1.0e-83 313.9 227 81.9
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 3.8e-83 312.0 227 82.4
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 2.7e-81 305.8 227 71.8
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 1.2e-79 300.4 227 77.1
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 3.3e-79 298.9 227 78.0
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 1.3e-78 297.0 227 76.7
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 2.2e-78 296.2 227 79.7
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 4.8e-78 295.0 227 75.8
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 4.8e-78 295.0 227 78.9
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 3.1e-77 292.4 227 73.1
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 4.1e-77 292.0 227 79.7
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 4.1e-77 292.0 227 79.7
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 9.1e-77 290.8 228 76.3
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 1.6e-76 290.0 227 77.5
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 1.6e-76 290.0 227 79.7
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 2.7e-76 289.3 228 75.9
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 2.7e-76 289.3 227 74.9
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 3.5e-76 288.9 227 78.9
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 5.9e-76 288.1 229 74.2
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 1.0e-75 287.3 227 75.8
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 1.5e-74 283.5 227 70.5
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 1.9e-74 283.1 227 74.0
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 2.7e-73 279.3 228 77.6
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 2.7e-73 279.3 226 71.7
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 1.4e-72 276.9 226 76.5
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 4.0e-72 275.4 227 75.3
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 1.5e-71 273.5 227 77.1
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 1.5e-71 273.5 227 73.1
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 2.0e-71 273.1 226 75.7
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 3.4e-71 272.3 227 73.1
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 3.4e-71 272.3 223 74.0
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 9.8e-71 270.8 227 73.1
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 1.7e-70 270.0 227 72.2
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 2.2e-70 269.6 225 75.1
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 1.1e-69 267.3 227 70.0
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 1.4e-69 266.9 227 73.6
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 9.1e-69 264.2 226 71.7
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 3.5e-68 262.3 223 70.0
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 4.5e-68 261.9 227 74.4
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.0e-67 260.8 226 73.0
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 2.9e-67 259.2 229 71.2
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 2.9e-67 259.2 223 74.4
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 3.8e-67 258.8 222 75.2
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 6.6e-67 258.1 227 73.1
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 6.6e-67 258.1 227 73.1
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 8.6e-67 257.7 227 74.0
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 2.5e-66 256.1 227 73.1
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 4.2e-66 255.4 227 73.1
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 5.5e-66 255.0 227 70.9
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 2.8e-65 252.7 226 69.0
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 1.0e-64 250.8 231 69.3
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 2.3e-64 249.6 227 67.0
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 3.0e-64 249.2 227 71.4
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 4.0e-64 248.8 227 70.5
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 6.8e-64 248.1 227 70.0
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 2.0e-63 246.5 248 64.1
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 2.6e-63 246.1 228 69.7
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 2.6e-63 246.1 230 64.8
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 3.4e-63 245.7 227 71.8
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 4.4e-63 245.4 226 66.8
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 9.8e-63 244.2 227 70.5
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 9.8e-63 244.2 227 69.6
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 1.3e-62 243.8 227 71.8
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 2.8e-62 242.7 227 69.2
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 3.7e-62 242.3 228 71.9
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 1.8e-61 240.0 226 69.9
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 3.1e-61 239.2 257 64.6
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 3.1e-61 239.2 226 70.4
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 4.1e-61 238.8 227 67.8
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 2.0e-60 236.5 227 68.7
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 2.0e-60 236.5 223 64.6
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 2.7e-60 236.1 245 62.0
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 3.5e-60 235.7 228 69.7
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 1.0e-59 234.2 226 69.0
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 1.7e-59 233.4 226 64.6
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 2.3e-59 233.0 227 70.0
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 2.5e-58 229.6 226 70.4
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 2.8e-57 226.1 230 57.0
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 3.6e-57 225.7 227 59.9
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 6.1e-57 224.9 329 53.8
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 1.0e-56 224.2 223 56.5
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 8.9e-56 221.1 226 65.5
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 1.2e-55 220.7 227 66.1
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 2.6e-55 219.5 230 66.1
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 3.4e-55 219.2 152 77.0
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 7.5e-55 218.0 227 64.3
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 1.7e-54 216.9 231 63.6
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 2.9e-54 216.1 233 64.8
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 1.1e-53 214.2 226 60.2
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 1.9e-53 213.4 227 64.8
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.9e-53 213.4 226 66.8
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 3.2e-53 212.6 226 60.2
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 3.2e-53 212.6 226 66.8
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 4.1e-53 212.2 226 56.6
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 4.1e-53 212.2 226 66.4
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 1.2e-52 210.7 226 67.3
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 6.0e-52 208.4 226 58.8
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 5.0e-51 205.3 228 59.6
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 1.2e-49 200.7 227 64.3
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 8.0e-49 198.0 227 64.3
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 9.8e-47 191.0 226 59.7
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 9.8e-47 191.0 226 59.7
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 9.8e-47 191.0 226 64.6
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 2.9e-46 189.5 228 53.5
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 4.9e-46 188.7 226 59.7
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 4.9e-46 188.7 228 53.5
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 3.2e-45 186.0 228 49.6
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 4.1e-45 185.7 226 59.3
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 7.0e-45 184.9 211 62.1
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 7.0e-45 184.9 227 59.5
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 9.2e-45 184.5 226 58.8
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 1.6e-44 183.7 226 55.8
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 6.0e-44 181.8 188 66.5
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 4.1e-37 159.1 96 78.1
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 2.2e-30 136.7 226 47.8
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 4.6e-28 129.0 231 41.1
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 2.3e-27 126.7 63 92.1
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.5e-26 124.0 231 39.8
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 1.6e-25 120.6 105 63.8
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 6.9e-24 115.2 95 62.1
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 1.2e-23 114.4 68 79.4
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 5.8e-23 112.1 222 38.7
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 4.9e-22 109.0 226 44.2
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 6.4e-22 108.6 229 36.2
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 3.8e-14 82.8 162 38.3
PSO541G1702 Papaver somniferum HOM05D006255 ORTHO05D008014 2.3e-11 73.6 167 41.9
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 3.3e-10 69.7 41 78.0
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 9.0e-08 61.6 78 43.6
CDE09G1089 Ceratophyllum demersum HOM05D003023 ORTHO05D003412 3.8e-06 56.2 75 69.3


User provided reference genes

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