Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A388T38 Lonicera japonica HOM05D003602 ORTHO05D004808 1.6e-166 589.3 292 100.0
Lj7P499T29 Lonicera japonica HOM05D003602 ORTHO05D004808 8.7e-125 450.7 309 76.1
Oeu007881.3 Olea europaea HOM05D003602 ORTHO05D004808 5.9e-105 384.8 310 64.8
DCAR_008665 Daucus carota HOM05D003602 ORTHO05D004808 2.9e-104 382.5 307 62.9
Hma1.2p1_0390F.1_g142640 Hydrangea macrophylla HOM05D003602 ORTHO05D004808 6.5e-104 381.3 309 65.4
CAN.G1415.23 Capsicum annuum HOM05D003602 ORTHO05D004808 1.1e-103 380.6 310 65.2
MSTRG.17352 Avicennia marina HOM05D003602 ORTHO05D004808 4.2e-103 378.6 310 64.5
Actinidia39220 Actinidia chinensis HOM05D003602 ORTHO05D004808 5.5e-103 378.3 309 63.8
Cc02_g39500 Coffea canephora HOM05D003602 ORTHO05D004808 7.2e-103 377.9 310 63.9
CSS0032390 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 1.6e-102 376.7 310 63.9
Nitab4.5_0001763g0060 Nicotiana tabacum HOM05D003602 ORTHO05D004808 2.1e-102 376.3 305 65.6
PGSC0003DMG401000117 Solanum tuberosum HOM05D003602 ORTHO05D004808 2.1e-102 376.3 310 64.5
Oeu043228.1 Olea europaea HOM05D003602 ORTHO05D004808 2.7e-102 375.9 310 63.9
Solyc01g096060.4 Solanum lycopersicum HOM05D003602 ORTHO05D004808 3.6e-102 375.6 310 64.2
Sopen01g039780 Solanum pennellii HOM05D003602 ORTHO05D004808 3.6e-102 375.6 310 64.2
CSS0048042 Camellia sinensis var. sinensis HOM05D003602 ORTHO05D004808 6.1e-102 374.8 309 62.5
Nitab4.5_0002614g0030 Nicotiana tabacum HOM05D003602 ORTHO05D004808 8.0e-102 374.4 305 65.2
Peaxi162Scf00345g00023 Petunia axillaris HOM05D003602 ORTHO05D004808 8.8e-101 370.9 310 62.9
Dinv32601 Davidia involucrata HOM05D003602 ORTHO05D004808 3.3e-100 369.0 309 62.8
vmacro07844 Vaccinium macrocarpon HOM05D003602 ORTHO05D004808 1.7e-99 366.7 309 63.4
Actinidia17298 Actinidia chinensis HOM05D003602 ORTHO05D004808 2.8e-99 365.9 309 62.8
Dinv34217 Davidia involucrata HOM05D003602 ORTHO05D004808 2.8e-99 365.9 309 61.8
Migut.N01537 Erythranthe guttata HOM05D003602 ORTHO05D004808 3.7e-99 365.5 310 62.9
Nn1g00272 Nelumbo nucifera HOM05D003602 ORTHO05D004808 3.7e-99 365.5 306 62.4
ECA236G0047 Erigeron canadensis HOM05D003602 ORTHO05D004808 4.5e-97 358.6 309 60.2
HanXRQChr04g0120491 Helianthus annuus HOM05D003602 ORTHO05D004808 4.5e-97 358.6 310 59.4
Lsat_1_v5_gn_7_961 Lactuca sativa HOM05D003602 ORTHO05D004808 7.7e-97 357.8 309 61.8
TAR375G0067 Trochodendron aralioides HOM05D003602 ORTHO05D004808 7.7e-97 357.8 300 62.0
SGA_v2.0_scaffold22G09979 Striga asiatica HOM05D003602 ORTHO05D004808 1.3e-96 357.1 310 61.0
SGA_v2.0_scaffold22G09976 Striga asiatica HOM05D003602 ORTHO05D004808 1.7e-96 356.7 310 61.0
Migut.B01885 Erythranthe guttata HOM05D003602 ORTHO05D004808 2.5e-95 352.8 310 60.3
COL.COLO4_06273 Corchorus olitorius HOM05D003602 ORTHO05D004808 6.1e-94 348.2 311 60.1
Manes.01G245400 Manihot esculenta HOM05D003602 ORTHO05D004808 1.0e-93 347.4 310 60.0
Gohir.D07G142200 Gossypium hirsutum HOM05D003602 ORTHO05D004808 2.3e-93 346.3 311 59.5
PGR042G2389 Punica granatum HOM05D003602 ORTHO05D004808 2.3e-93 346.3 309 58.6
Gohir.A07G137000 Gossypium hirsutum HOM05D003602 ORTHO05D004808 3.0e-93 345.9 311 59.5
Gorai.001G154000 Gossypium raimondii HOM05D003602 ORTHO05D004808 4.0e-93 345.5 311 59.5
Manes.05G021800 Manihot esculenta HOM05D003602 ORTHO05D004808 6.8e-93 344.7 310 59.4
Rhsim03G0025100 Rhododendron simsii HOM05D003602 ORTHO05D004808 8.8e-93 344.4 310 59.4
Aqoxy7G00067 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 1.2e-92 344.0 304 60.2
THA.LOC104817368 Tarenaya hassleriana HOM05D003602 ORTHO05D004808 2.6e-92 342.8 309 58.6
Duzib138G1559 Durio zibethinus HOM05D003602 ORTHO05D004808 5.7e-92 341.7 311 58.8
Thecc.01G340800 Theobroma cacao HOM05D003602 ORTHO05D004808 1.7e-91 340.1 311 59.2
CANSAT56G2221 Cannabis sativa HOM05D003602 ORTHO05D004808 3.7e-91 339.0 310 58.1
MELO3C006015.2 Cucumis melo HOM05D003602 ORTHO05D004808 4.8e-91 338.6 309 58.3
CsaV3_3G007970 Cucumis sativus L. HOM05D003602 ORTHO05D004808 4.8e-91 338.6 309 58.3
C04p01410 Brassica napus HOM05D003602 ORTHO05D004808 8.3e-91 337.8 309 57.3
BolC4t21795H Brassica oleracea HOM05D003602 ORTHO05D004808 8.3e-91 337.8 309 57.3
ClCG05G000750 Citrullus lanatus HOM05D003602 ORTHO05D004808 8.3e-91 337.8 309 58.3
Duzib133G0673 Durio zibethinus HOM05D003602 ORTHO05D004808 8.3e-91 337.8 311 58.8
SalBow2G0371 Salvia bowleyana HOM05D003602 ORTHO05D004808 8.3e-91 337.8 308 59.4
CiPaw.01G077200 Carya illinoinensis HOM05D003602 ORTHO05D004808 1.1e-90 337.4 309 57.9
CARHR141850 Cardamine hirsuta HOM05D003602 ORTHO05D004808 1.4e-90 337.0 309 57.9
MD01G1083100 Malus domestica HOM05D003602 ORTHO05D004808 1.8e-90 336.7 309 57.3
arahy.Tifrunner.gnm1.ann1.100NT6 Arachis hypogaea HOM05D003602 ORTHO05D004808 3.1e-90 335.9 302 57.9
arahy.Tifrunner.gnm1.ann1.M38EY0 Arachis hypogaea HOM05D003602 ORTHO05D004808 3.1e-90 335.9 302 57.9
Aa31LG1G27870 Aethionema arabicum HOM05D003602 ORTHO05D004808 5.4e-90 335.1 309 56.0
Ciclev10018709m.g Citrus clementina HOM05D003602 ORTHO05D004808 5.4e-90 335.1 309 57.9
Haze_15672 Corylus avellana HOM05D003602 ORTHO05D004808 9.1e-90 334.3 309 57.0
Sed0022447 Sechium edule HOM05D003602 ORTHO05D004808 9.1e-90 334.3 309 57.0
Potri.014G100000 Populus trichocarpa HOM05D003602 ORTHO05D004808 2.7e-89 332.8 310 57.7
Sed0018077 Sechium edule HOM05D003602 ORTHO05D004808 2.7e-89 332.8 309 57.6
Cfa003788 Carpinus fangiana HOM05D003602 ORTHO05D004808 3.5e-89 332.4 309 56.6
PSO135G0828 Papaver somniferum HOM05D003602 ORTHO05D004808 3.5e-89 332.4 310 56.5
TWI59G0599 Tripterygium wilfordii HOM05D003602 ORTHO05D004808 3.5e-89 332.4 309 57.6
QL08p045638 Quercus lobata HOM05D003602 ORTHO05D004808 4.5e-89 332.0 309 57.0
Potri.002G172700 Populus trichocarpa HOM05D003602 ORTHO05D004808 7.7e-89 331.3 310 57.4
PSO384G3294 Papaver somniferum HOM05D003602 ORTHO05D004808 1.0e-88 330.9 312 56.1
unitig_736.g22809 Utricularia gibba HOM05D003602 ORTHO05D004808 1.0e-88 330.9 310 57.1
QL11p045606 Quercus lobata HOM05D003602 ORTHO05D004808 1.3e-88 330.5 306 57.2
Sabra02G0140500 Salix brachista HOM05D003602 ORTHO05D004808 2.2e-88 329.7 306 58.5
Glyma.07G054900 Glycine max HOM05D003602 ORTHO05D004808 2.9e-88 329.3 302 57.6
Glyma.16G023700 Glycine max HOM05D003602 ORTHO05D004808 2.9e-88 329.3 302 57.6
AL4G45940 Arabidopsis lyrata HOM05D003602 ORTHO05D004808 6.5e-88 328.2 309 56.0
Carub.0004s2923 Capsella rubella HOM05D003602 ORTHO05D004808 8.5e-88 327.8 309 56.6
AT2G46520 Arabidopsis thaliana HOM05D003602 ORTHO05D004808 1.1e-87 327.4 309 56.0
Sabra14G0073400 Salix brachista HOM05D003602 ORTHO05D004808 1.1e-87 327.4 310 56.8
A05p01280 Brassica napus HOM05D003602 ORTHO05D004808 1.9e-87 326.6 309 56.3
BraA05t19126Z Brassica rapa HOM05D003602 ORTHO05D004808 1.9e-87 326.6 309 56.3
Eucgr.D02383 Eucalyptus grandis HOM05D003602 ORTHO05D004808 2.5e-87 326.2 309 56.3
MD07G1151800 Malus domestica HOM05D003602 ORTHO05D004808 3.2e-87 325.9 309 57.0
CARHR195690 Cardamine hirsuta HOM05D003602 ORTHO05D004808 5.5e-87 325.1 309 56.0
Prupe.2G190300 Prunus persica HOM05D003602 ORTHO05D004808 5.5e-87 325.1 309 55.7
RcHm_v2.0_Chr1g0360031 Rosa chinensis HOM05D003602 ORTHO05D004808 5.5e-87 325.1 306 56.9
VMungo0540G0209 Vigna mungo HOM05D003602 ORTHO05D004808 5.5e-87 325.1 302 57.9
Phvul.006G114111 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 9.5e-87 324.3 303 57.8
VMungo0540G0473 Vigna mungo HOM05D003602 ORTHO05D004808 1.6e-86 323.6 302 57.6
TPR.G20226 Trifolium pratense HOM05D003602 ORTHO05D004808 2.1e-86 323.2 311 55.6
Lalb_Chr04g0254381 Lupinus albus HOM05D003602 ORTHO05D004808 2.7e-86 322.8 309 55.7
Thhalv10001293m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 3.6e-86 322.4 310 56.5
Sp4g28560 Schrenkiella parvula HOM05D003602 ORTHO05D004808 3.6e-86 322.4 309 55.3
Phvul.006G114200 Phaseolus vulgaris HOM05D003602 ORTHO05D004808 8.0e-86 321.2 302 57.3
FAN10G2704 Fragaria x ananassa HOM05D003602 ORTHO05D004808 1.8e-85 320.1 305 56.4
FvH4_7g16830 Fragaria vesca HOM05D003602 ORTHO05D004808 2.3e-85 319.7 305 56.4
Lalb_Chr17g0342751 Lupinus albus HOM05D003602 ORTHO05D004808 2.3e-85 319.7 309 56.0
FAN03G2718 Fragaria x ananassa HOM05D003602 ORTHO05D004808 3.0e-85 319.3 305 56.4
Lj3g0012795 Lotus japonicus HOM05D003602 ORTHO05D004808 3.0e-85 319.3 310 54.8
FAN01G1925 Fragaria x ananassa HOM05D003602 ORTHO05D004808 5.2e-85 318.5 305 56.1
FAN10G3025 Fragaria x ananassa HOM05D003602 ORTHO05D004808 5.2e-85 318.5 305 56.1
FAN06G4341 Fragaria x ananassa HOM05D003602 ORTHO05D004808 6.8e-85 318.2 302 56.6
CDE10G0625 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 8.8e-85 317.8 308 54.9
Ca_23524_v3 Cicer arietinum L. HOM05D003602 ORTHO05D004808 8.8e-85 317.8 312 55.8
FAN06G1715 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.0e-84 316.6 305 56.1
Psat4g162200 Pisum sativum HOM05D003602 ORTHO05D004808 9.8e-84 314.3 311 54.7
Medtr8g027450 Medicago truncatula HOM05D003602 ORTHO05D004808 5.4e-82 308.5 304 53.3
Aqoxy4G00207 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 7.0e-82 308.1 316 53.2
ATR0605G321 Amborella trichopoda HOM05D003602 ORTHO05D004808 1.2e-81 307.4 300 54.7
SEGI_02600 Sequoiadendron giganteum HOM05D003602 ORTHO05D004808 8.6e-80 301.2 300 52.7
Hund27357 Selenicereus undatus HOM05D003602 ORTHO05D004808 2.1e-78 296.6 312 52.2
Medtr6g051660 Medicago truncatula HOM05D003602 ORTHO05D004808 2.8e-78 296.2 305 55.1
Sc02g0002440 Simmondsia chinensis HOM05D003602 ORTHO05D004808 4.7e-78 295.4 311 51.4
Sc02g0002490 Simmondsia chinensis HOM05D003602 ORTHO05D004808 4.7e-78 295.4 311 51.4
Mapoly0156s0024 Marchantia polymorpha HOM05D003602 ORTHO05D004808 3.0e-77 292.7 303 53.1
EL10Ac6g13271 Beta vulgaris HOM05D003602 ORTHO05D004808 4.1e-74 282.3 311 50.2
Pp3c16_3270 Physcomitrium patens HOM05D003602 ORTHO05D004808 9.2e-74 281.2 300 51.0
AUR62020311 Chenopodium quinoa HOM05D003602 ORTHO05D004808 3.5e-73 279.3 311 50.2
Ah.03g136880 Amaranthus hybridus HOM05D003602 ORTHO05D004808 4.6e-73 278.9 310 50.3
Ah.14g081150 Amaranthus hybridus HOM05D003602 ORTHO05D004808 5.9e-73 278.5 310 50.6
Pp3c27_3380 Physcomitrium patens HOM05D003602 ORTHO05D004808 9.5e-71 271.2 306 48.4
SMO364G0669 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 2.8e-70 269.6 306 47.7
HPP92_002938 Vanilla planifolia HOM05D003602 ORTHO05D004808 1.0e-69 267.7 308 48.7
EL10Ac8g18571 Beta vulgaris HOM05D003602 ORTHO05D004808 1.4e-69 267.3 307 48.9
Carub.0001s3638 Capsella rubella HOM05D003602 ORTHO05D004808 5.2e-69 265.4 310 48.1
AagrBONN_evm.TU.Sc2ySwM_228.4084 Anthoceros agrestis HOM05D003602 ORTHO05D004808 7.5e-68 261.5 306 45.8
Zm00001eb216140 Zea mays HOM05D003602 ORTHO05D004808 1.1e-63 247.7 304 45.4
AagrBONN_evm.TU.Sc2ySwM_368.664__665 Anthoceros agrestis HOM05D003602 ORTHO05D004808 9.5e-63 244.6 306 44.1
Zm00001eb055080 Zea mays HOM05D003602 ORTHO05D004808 2.1e-62 243.4 311 44.4
CBR_g50023 Chara braunii HOM05D003602 ORTHO05D004808 1.2e-60 237.7 316 42.1
SHI11330 Sapria himalayana HOM05D003602 ORTHO05D004808 3.7e-59 232.6 305 43.9
SMO358G0230 Selaginella moellendorffii HOM05D003602 ORTHO05D004808 2.4e-58 229.9 309 43.0
CARHR193560 Cardamine hirsuta HOM05D003602 ORTHO05D004808 2.3e-56 223.4 196 59.2
MCO04G210 Micromonas commoda HOM05D003602 ORTHO05D004808 1.4e-53 214.2 304 40.5
BolC2t07236H Brassica oleracea HOM05D003602 ORTHO05D004808 8.9e-53 211.5 306 44.8
Thhalv10019782m.g Eutrema salsugineum HOM05D003602 ORTHO05D004808 4.9e-51 205.7 301 40.5
ECA240G0654 Erigeron canadensis HOM05D003602 ORTHO05D004808 8.4e-51 204.9 251 49.4
PRCOL_00001712 Prasinoderma coloniale HOM05D003602 ORTHO05D004808 8.6e-48 194.9 320 36.2
BcaC03g13954 Brassica carinata HOM05D003602 ORTHO05D004808 2.5e-47 193.4 293 44.4
Lsat_1_v5_gn_2_118340 Lactuca sativa HOM05D003602 ORTHO05D004808 1.6e-46 190.7 232 47.0
Cre16.g685901 Chlamydomonas reinhardtii HOM05D003602 ORTHO05D004808 3.4e-44 183.0 299 36.5
A02p08760 Brassica napus HOM05D003602 ORTHO05D004808 7.1e-42 175.3 225 48.4
BraA02t05946Z Brassica rapa HOM05D003602 ORTHO05D004808 1.2e-41 174.5 225 48.4
CDE10G0721 Ceratophyllum demersum HOM05D003602 ORTHO05D004808 6.6e-40 168.7 141 61.0
Lj5A75T44 Lonicera japonica HOM05D003602 ORTHO05D004808 3.3e-39 166.4 265 42.3
TPR.G33518 Trifolium pratense HOM05D003602 ORTHO05D004808 3.3e-39 166.4 145 60.0
Psat4g156360 Pisum sativum HOM05D003602 ORTHO05D004808 2.5e-31 140.2 165 48.5
BcaC02g12682 Brassica carinata HOM05D003602 ORTHO05D004808 1.4e-26 124.4 129 53.5
Lsat_1_v5_gn_2_68180 Lactuca sativa HOM05D003602 ORTHO05D004808 3.2e-26 123.2 86 76.7
Cfa023442 Carpinus fangiana HOM05D003602 ORTHO05D004808 2.1e-25 120.6 298 27.2
QL06p027270 Quercus lobata HOM05D004207 ORTHO05D005188 4.6e-25 119.4 86 69.8
Prupe.2G190900 Prunus persica HOM05D003602 ORTHO05D004808 5.1e-24 115.9 162 43.8
AUR62011778 Chenopodium quinoa HOM05D003602 ORTHO05D004808 2.5e-23 113.6 112 55.4
Lsat_1_v5_gn_2_44960 Lactuca sativa HOM05D003602 ORTHO05D004808 2.0e-20 104.0 117 41.9
FAN17G1261 Fragaria x ananassa HOM05D003602 ORTHO05D004808 2.9e-19 100.1 168 39.9
BcaC03g15021 Brassica carinata HOM05D003602 ORTHO05D018547 2.7e-17 93.6 243 31.3
QL02p042411 Quercus lobata HOM05D002707 ORTHO05D002925 1.0e-11 75.1 53 69.8
QL04p077689 Quercus lobata HOM05D003602 ORTHO05D002925 1.1e-10 71.6 52 69.2
unitig_899.g14794 Utricularia gibba HOM05D003602 ORTHO05D018547 9.3e-10 68.6 101 38.6
FAN12G2779 Fragaria x ananassa HOM05D003602 ORTHO05D004808 5.7e-07 59.3 65 43.1
Nitab4.5_0001687g0080 Nicotiana tabacum HOM05D002786 ORTHO05D003493 2.2e-06 57.4 318 24.8
SEGI_37762 Sequoiadendron giganteum HOM05D002786 ORTHO05D003493 2.8e-06 57.0 291 23.7
Nitab4.5_0001526g0120 Nicotiana tabacum HOM05D002786 ORTHO05D003493 8.2e-06 55.5 318 24.8


User provided reference genes

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