Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 2.2e-54 215.3 105 100.0
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 1.5e-29 132.9 101 67.3
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 4.2e-29 131.3 102 66.7
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 4.2e-29 131.3 100 64.0
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 1.6e-28 129.4 101 66.3
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 2.7e-28 128.6 102 64.7
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 3.6e-28 128.3 90 70.0
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 3.6e-28 128.3 91 72.5
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 8.0e-28 127.1 86 75.6
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 1.0e-27 126.7 100 64.0
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 1.4e-27 126.3 85 76.5
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 1.4e-27 126.3 85 74.1
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 1.8e-27 125.9 86 70.9
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 3.0e-27 125.2 92 68.5
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 3.0e-27 125.2 92 68.5
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 3.0e-27 125.2 92 69.6
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 4.0e-27 124.8 92 69.6
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 4.0e-27 124.8 91 69.2
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 6.7e-27 124.0 84 75.0
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.1e-26 123.2 93 69.9
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.1e-26 123.2 88 70.5
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 9.7e-26 120.2 88 69.3
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 1.3e-25 119.8 79 72.2
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.8e-25 118.6 86 68.6
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 2.8e-25 118.6 82 69.5
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 2.8e-25 118.6 81 70.4
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 3.7e-25 118.2 100 62.0
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 4.8e-25 117.9 71 77.5
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 8.2e-25 117.1 96 59.4
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 1.1e-24 116.7 92 63.0
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 1.1e-24 116.7 86 65.1
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 1.8e-24 115.9 82 69.5
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 3.1e-24 115.2 82 70.7
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 4.1e-24 114.8 76 73.7
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 5.3e-24 114.4 77 72.7
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 7.0e-24 114.0 74 74.3
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 9.1e-24 113.6 92 59.8
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 1.2e-23 113.2 92 59.8
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 1.6e-23 112.8 69 79.7
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 2.0e-23 112.5 83 63.9
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 2.7e-23 112.1 92 57.6
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 7.7e-23 110.5 72 72.2
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 1.0e-22 110.2 85 65.9
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 1.0e-22 110.2 68 77.9
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 1.3e-22 109.8 78 65.4
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 1.7e-22 109.4 75 72.0
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 2.9e-22 108.6 79 68.4
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 3.8e-22 108.2 95 54.7
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 6.5e-22 107.5 60 86.7
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 6.5e-22 107.5 96 53.1
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 1.1e-21 106.7 77 64.9
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 1.5e-21 106.3 75 65.3
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.9e-21 105.9 92 55.4
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.9e-21 105.9 92 56.5
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 3.2e-21 105.1 93 62.4
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 3.2e-21 105.1 68 73.5
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 3.2e-21 105.1 71 69.0
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 4.2e-21 104.8 74 67.6
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 9.4e-21 103.6 87 59.8
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 1.2e-20 103.2 92 55.4
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 2.1e-20 102.4 74 67.6
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 3.6e-20 101.7 66 71.2
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 3.6e-20 101.7 90 56.7
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 8.0e-20 100.5 77 62.3
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 1.0e-19 100.1 77 62.3
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 1.0e-19 100.1 77 62.3
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 2.3e-19 99.0 60 76.7
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 4.0e-19 98.2 91 56.0
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 4.0e-19 98.2 60 78.3
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 5.2e-19 97.8 74 70.3
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 6.8e-19 97.4 95 54.7
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 5.7e-18 94.4 77 58.4
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 1.3e-17 93.2 69 63.8
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 1.3e-17 93.2 81 56.8
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 1.7e-17 92.8 69 66.7
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 2.2e-17 92.4 59 72.9
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 8.3e-17 90.5 72 61.1
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 1.1e-16 90.1 72 61.1
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 2.4e-16 89.0 67 65.7
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 7.0e-16 87.4 61 65.6
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 1.0e-14 83.6 80 56.2
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 1.3e-14 83.2 71 52.1
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 2.2e-14 82.4 76 50.0
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 2.9e-14 82.0 79 54.4
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 3.8e-14 81.6 60 58.3
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 6.5e-14 80.9 71 52.1
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 8.5e-14 80.5 71 52.1
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 8.5e-14 80.5 72 58.3
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 8.5e-14 80.5 72 58.3
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 1.1e-13 80.1 72 51.4
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 1.5e-13 79.7 71 52.1
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 2.5e-13 79.0 78 48.7
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 3.2e-13 78.6 92 50.0
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 5.5e-13 77.8 75 49.3
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 7.2e-13 77.4 75 49.3
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 9.5e-13 77.0 71 49.3
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 9.5e-13 77.0 75 49.3
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 9.5e-13 77.0 75 49.3
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 9.5e-13 77.0 75 49.3
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 9.5e-13 77.0 75 49.3
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 3.6e-12 75.1 75 49.3
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 1.8e-11 72.8 90 46.7
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 6.8e-11 70.9 58 62.1
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 1.5e-10 69.7 71 47.9
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 1.3e-09 66.6 83 47.0
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 4.9e-09 64.7 85 48.2
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 1.8e-08 62.8 38 78.9
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 5.4e-08 61.2 40 67.5
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 2.0e-07 59.3 42 64.3
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 5.9e-07 57.8 71 45.1
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 2.9e-06 55.5 34 73.5


User provided reference genes

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