Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A350G66 Lonicera japonica HOM05D006342 ORTHO05D008155 9.8e-209 729.9 382 100.0
Actinidia24004 Actinidia chinensis HOM05D006342 ORTHO05D008155 9.3e-143 510.8 363 76.0
CSS0025541 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 1.4e-138 496.9 365 75.1
Hma1.2p1_0522F.1_g171800 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 3.8e-136 488.8 357 71.7
QL11p022820 Quercus lobata HOM05D006342 ORTHO05D008155 3.5e-134 482.3 374 69.8
Dinv24174 Davidia involucrata HOM05D006342 ORTHO05D008155 3.3e-132 475.7 311 80.1
DCAR_003711 Daucus carota HOM05D006342 ORTHO05D008155 6.3e-131 471.5 361 70.4
Oeu042410.2 Olea europaea HOM05D006342 ORTHO05D008155 3.1e-130 469.2 322 75.8
Rhsim11G0137800 Rhododendron simsii HOM05D006342 ORTHO05D008155 3.1e-130 469.2 367 70.3
RhsimUnG0187900 Rhododendron simsii HOM05D006342 ORTHO05D008155 3.1e-130 469.2 367 70.0
Nn5g30026 Nelumbo nucifera HOM05D006342 ORTHO05D008155 2.0e-129 466.5 322 76.4
Peaxi162Scf01060g00128 Petunia axillaris HOM05D006342 ORTHO05D008155 1.7e-128 463.4 354 69.8
CAN.G523.45 Capsicum annuum HOM05D006342 ORTHO05D008155 2.2e-128 463.0 380 66.8
Manes.07G034700 Manihot esculenta HOM05D006342 ORTHO05D008155 6.5e-128 461.5 366 68.0
Lalb_Chr05g0217591 Lupinus albus HOM05D006342 ORTHO05D008155 2.5e-127 459.5 354 69.8
Nitab4.5_0000863g0140 Nicotiana tabacum HOM05D006342 ORTHO05D008155 5.5e-127 458.4 321 74.5
Nitab4.5_0003959g0010 Nicotiana tabacum HOM05D006342 ORTHO05D008155 7.2e-127 458.0 348 71.6
HanXRQChr10g0303621 Helianthus annuus HOM05D006342 ORTHO05D008155 1.2e-126 457.2 368 67.1
Sopen01g047960 Solanum pennellii HOM05D006342 ORTHO05D008155 3.6e-126 455.7 322 75.5
TAR628G1271 Trochodendron aralioides HOM05D006342 ORTHO05D008155 2.3e-125 453.0 382 64.9
GSVIVG01015772001 Vitis vinifera HOM05D006342 ORTHO05D008155 2.3e-125 453.0 317 75.7
ECA234G3624 Erigeron canadensis HOM05D006342 ORTHO05D008155 3.9e-125 452.2 377 65.8
PSO447G0017 Papaver somniferum HOM05D006342 ORTHO05D008155 3.9e-125 452.2 382 66.5
PGSC0003DMG400012575 Solanum tuberosum HOM05D006342 ORTHO05D008155 5.1e-125 451.8 322 74.5
Lj4g0023834 Lotus japonicus HOM05D006342 ORTHO05D008155 2.0e-124 449.9 337 69.1
Ciclev10028615m.g Citrus clementina HOM05D006342 ORTHO05D008155 7.4e-124 448.0 372 66.4
Cc02_g21250 Coffea canephora HOM05D006342 ORTHO05D008155 1.7e-123 446.8 363 65.0
Prupe.8G064500 Prunus persica HOM05D006342 ORTHO05D008155 3.7e-123 445.7 352 68.8
PGR042G1699 Punica granatum HOM05D006342 ORTHO05D008155 1.4e-122 443.7 320 71.6
Lsat_1_v5_gn_5_108680 Lactuca sativa HOM05D006342 ORTHO05D008155 2.4e-122 443.0 357 68.1
Thecc.02G134500 Theobroma cacao HOM05D006342 ORTHO05D008155 4.1e-122 442.2 359 67.7
CANSAT21G1086 Cannabis sativa HOM05D006342 ORTHO05D008155 1.5e-121 440.3 355 67.3
Medtr4g094100 Medicago truncatula HOM05D006342 ORTHO05D008155 2.6e-121 439.5 328 70.4
Gorai.005G222500 Gossypium raimondii HOM05D006342 ORTHO05D008155 4.5e-121 438.7 311 74.3
Eucgr.G00932 Eucalyptus grandis HOM05D006342 ORTHO05D008155 1.3e-120 437.2 372 63.4
RcHm_v2.0_Chr2g0143381 Rosa chinensis HOM05D006342 ORTHO05D008155 1.3e-120 437.2 378 64.8
Gohir.D02G198600 Gossypium hirsutum HOM05D006342 ORTHO05D008155 1.7e-120 436.8 362 65.7
CiPaw.05G033400 Carya illinoinensis HOM05D006342 ORTHO05D008155 6.5e-120 434.9 356 66.3
Gohir.A03G175100 Gossypium hirsutum HOM05D006342 ORTHO05D008155 8.5e-120 434.5 311 73.3
Potri.017G050900 Populus trichocarpa HOM05D006342 ORTHO05D008155 1.1e-119 434.1 369 65.9
Sabra17G0037300 Salix brachista HOM05D006342 ORTHO05D008155 1.9e-119 433.3 321 70.7
Duzib052G0010 Durio zibethinus HOM05D006342 ORTHO05D008155 2.5e-119 433.0 386 62.7
Atru.chr6.1184 Acer truncatum HOM05D006342 ORTHO05D008155 4.2e-119 432.2 400 60.5
arahy.Tifrunner.gnm1.ann1.U7PRNJ Arachis hypogaea HOM05D006342 ORTHO05D008155 9.4e-119 431.0 318 72.0
TWI23G0792 Tripterygium wilfordii HOM05D006342 ORTHO05D008155 9.4e-119 431.0 326 70.6
Migut.B00584 Erythranthe guttata HOM05D006342 ORTHO05D008155 1.2e-118 430.6 339 67.6
MSTRG.16600 Avicennia marina HOM05D006342 ORTHO05D008155 1.6e-118 430.3 362 63.8
Psat7g100320 Pisum sativum HOM05D006342 ORTHO05D008155 2.1e-118 429.9 344 65.1
CsaV3_7G006740 Cucumis sativus L. HOM05D006342 ORTHO05D008155 2.7e-118 429.5 313 72.8
MELO3C018621.2 Cucumis melo HOM05D006342 ORTHO05D008155 3.6e-118 429.1 313 72.8
VMungo0251G1514 Vigna mungo HOM05D006342 ORTHO05D008155 3.6e-118 429.1 313 71.6
Ca_18366_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 6.1e-118 428.3 309 72.2
AUR62013159 Chenopodium quinoa HOM05D006342 ORTHO05D008155 1.8e-117 426.8 371 63.9
Glyma.08G070600 Glycine max HOM05D006342 ORTHO05D008155 3.9e-117 425.6 312 72.1
SGA_v2.0_scaffold83G26327 Striga asiatica HOM05D006342 ORTHO05D008155 3.9e-117 425.6 323 70.0
TPR.G35344 Trifolium pratense HOM05D006342 ORTHO05D008155 2.6e-116 422.9 326 67.8
MD10G1052500 Malus domestica HOM05D006342 ORTHO05D008155 3.3e-116 422.5 335 68.7
AUR62010160 Chenopodium quinoa HOM05D006342 ORTHO05D008155 7.4e-116 421.4 341 66.3
Glyma.13G042800 Glycine max HOM05D006342 ORTHO05D008155 7.4e-116 421.4 312 71.5
EL10Ac9g21517 Beta vulgaris HOM05D006342 ORTHO05D008155 3.1e-114 416.0 355 63.7
FAN02G0548 Fragaria x ananassa HOM05D006342 ORTHO05D008155 3.1e-114 416.0 349 64.2
FvH4_6g33511 Fragaria vesca HOM05D006342 ORTHO05D008155 1.2e-113 414.1 311 69.1
SalBow5G5605 Salvia bowleyana HOM05D006342 ORTHO05D008155 3.5e-113 412.5 369 61.0
AL2G16000 Arabidopsis lyrata HOM05D006342 ORTHO05D008155 5.0e-112 408.7 310 69.4
Thhalv10023528m.g Eutrema salsugineum HOM05D006342 ORTHO05D008155 1.5e-111 407.1 310 68.4
Carub.0002s0473 Capsella rubella HOM05D006342 ORTHO05D008155 1.9e-111 406.8 310 69.0
AT1G60600 Arabidopsis thaliana HOM05D006342 ORTHO05D008155 3.2e-111 406.0 310 69.0
BcaB04g20275 Brassica carinata HOM05D006342 ORTHO05D008155 3.2e-111 406.0 310 68.7
A01p29370 Brassica napus HOM05D006342 ORTHO05D008155 4.2e-111 405.6 325 66.8
Sc15g0003050 Simmondsia chinensis HOM05D006342 ORTHO05D008155 9.4e-111 404.4 362 61.6
Migut.B01155 Erythranthe guttata HOM05D006342 ORTHO05D008155 3.6e-110 402.5 325 64.6
Solyc01g105460.4 Solanum lycopersicum HOM05D006342 ORTHO05D008155 1.4e-109 400.6 279 75.3
BolC1t03681H Brassica oleracea HOM05D006342 ORTHO05D008155 2.3e-109 399.8 311 67.8
arahy.Tifrunner.gnm1.ann1.XZGJ82 Arachis hypogaea HOM05D006342 ORTHO05D008155 3.9e-109 399.1 315 68.6
BraA01t03071Z Brassica rapa HOM05D006342 ORTHO05D008155 3.9e-109 399.1 311 67.2
Sabra17G0042600 Salix brachista HOM05D006342 ORTHO05D008155 1.1e-108 397.5 368 61.4
COL.COLO4_32304 Corchorus olitorius HOM05D006342 ORTHO05D008155 1.5e-108 397.1 288 72.6
BcaC09g49390 Brassica carinata HOM05D006342 ORTHO05D008155 3.3e-108 396.0 311 67.5
C01p37160 Brassica napus HOM05D006342 ORTHO05D008155 3.3e-108 396.0 311 67.5
Sabra17G0037900 Salix brachista HOM05D006342 ORTHO05D008155 4.4e-108 395.6 364 61.3
Aa31LG2G9860 Aethionema arabicum HOM05D006342 ORTHO05D008155 9.7e-108 394.4 312 67.6
Cpa.g.sc42.26 Carica papaya HOM05D006342 ORTHO05D008155 1.7e-107 393.7 287 73.2
ClCG09G015650 Citrullus lanatus HOM05D006342 ORTHO05D008155 4.8e-107 392.1 336 64.6
unitig_0.g609 Utricularia gibba HOM05D006342 ORTHO05D008190 2.4e-106 389.8 339 62.5
MSTRG.20291 Avicennia marina HOM05D006342 ORTHO05D008155 5.9e-105 385.2 309 65.4
Os03g0190100 Oryza sativa ssp. japonica HOM05D006342 ORTHO05D008155 5.9e-105 385.2 310 66.5
THA.LOC104799883 Tarenaya hassleriana HOM05D006342 ORTHO05D008155 5.0e-104 382.1 317 65.0
vmacro01839 Vaccinium macrocarpon HOM05D006342 ORTHO05D008155 1.0e-101 374.4 413 54.5
MBI05_g05612_MAGBIO Magnolia biondii HOM05D006342 ORTHO05D008155 2.3e-101 373.2 303 68.3
Oeu000253.3 Olea europaea HOM05D006342 ORTHO05D008155 5.4e-98 362.1 332 61.4
PSO210G1371 Papaver somniferum HOM05D006342 ORTHO05D008155 1.2e-97 360.9 245 78.0
Pp3c15_22700 Physcomitrium patens HOM05D006342 ORTHO05D008155 1.0e-96 357.8 317 59.6
Hund06370 Selenicereus undatus HOM05D006342 ORTHO05D008155 1.3e-96 357.5 282 67.0
Migut.B01157 Erythranthe guttata HOM05D006342 ORTHO05D008155 9.4e-95 351.3 299 61.5
HPP92_019303 Vanilla planifolia HOM05D006342 ORTHO05D008155 3.0e-93 346.3 339 58.4
FAN09G1871 Fragaria x ananassa HOM05D006342 ORTHO05D003187 4.0e-93 345.9 366 54.9
Mapoly0112s0045 Marchantia polymorpha HOM05D006342 ORTHO05D008155 5.2e-93 345.5 314 58.9
Zm00001eb006830 Zea mays HOM05D006342 ORTHO05D008155 9.8e-92 341.3 323 58.2
SMO364G0259 Selaginella moellendorffii HOM05D006342 ORTHO05D008155 2.0e-89 333.6 288 62.2
Phvul.002G210750 Phaseolus vulgaris HOM05D006342 ORTHO05D008155 4.4e-84 315.8 217 74.7
Sed0004067 Sechium edule HOM05D006342 ORTHO05D008155 1.4e-82 310.8 238 68.1
QL11p022738 Quercus lobata HOM05D006342 ORTHO05D008155 2.5e-79 300.1 231 70.6
Hma1.2p1_0522F.1_g171810 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 1.7e-75 287.3 202 74.3
SpUN0430_0010 Schrenkiella parvula HOM05D006342 ORTHO05D008155 3.7e-75 286.2 233 65.7
Haze_10585 Corylus avellana HOM05D006342 ORTHO05D008155 9.2e-74 281.6 292 56.2
Ah.01g010100 Amaranthus hybridus HOM05D006342 ORTHO05D008155 3.9e-72 276.2 218 67.0
AagrBONN_evm.TU.Sc2ySwM_228.424 Anthoceros agrestis HOM05D006342 ORTHO05D008155 2.5e-71 273.5 331 48.3
FAN14G1047 Fragaria x ananassa HOM05D000343 ORTHO05D003187 6.8e-69 265.4 351 46.7
AagrBONN_evm.TU.Sc2ySwM_117.3744 Anthoceros agrestis HOM05D006342 ORTHO05D008155 3.2e-66 256.5 322 46.0
PRCOL_00002739 Prasinoderma coloniale HOM05D006342 ORTHO05D008155 3.2e-58 229.9 309 45.3
CBR_g45392 Chara braunii HOM05D006342 ORTHO05D008155 2.8e-54 216.9 279 45.5
SEGI_15165 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 6.4e-51 205.7 181 60.8
Cre04.g219787 Chlamydomonas reinhardtii HOM05D006342 ORTHO05D008155 1.1e-50 204.9 348 39.9
ATR0918G004 Amborella trichopoda HOM05D006342 ORTHO05D008155 2.4e-50 203.8 284 46.5
Aqoxy5G01924 Aquilegia oxysepala HOM05D006342 ORTHO05D008155 4.3e-39 166.4 134 66.4
ATR0782G112 Amborella trichopoda HOM05D006342 ORTHO05D008155 1.7e-27 127.9 104 63.5
Glyma.10G123801 Glycine max HOM05D006342 ORTHO05D008155 2.2e-27 127.5 109 60.6
Glyma.16G064700 Glycine max HOM05D006342 ORTHO05D008155 2.2e-27 127.5 109 60.6
SEGI_15059 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 7.1e-26 122.5 107 61.7
arahy.Tifrunner.gnm1.ann1.6J847D Arachis hypogaea HOM05D006342 ORTHO05D008155 1.5e-20 104.8 104 57.7
arahy.Tifrunner.gnm1.ann1.RT43SE Arachis hypogaea HOM05D006342 ORTHO05D008155 1.5e-20 104.8 104 57.7
arahy.Tifrunner.gnm1.ann1.2FS2S8 Arachis hypogaea HOM05D006342 ORTHO05D008155 1.0e-19 102.1 99 56.6
CARHR052370 Cardamine hirsuta HOM05D006342 ORTHO05D008155 5.0e-19 99.8 95 55.8
CSS0034348 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 6.7e-16 89.4 102 53.9
TAR376G0398 Trochodendron aralioides HOM05D000064 ORTHO05D001307 1.5e-12 78.2 51 76.5
arahy.Tifrunner.gnm1.ann1.P2KY5D Arachis hypogaea HOM05D006342 ORTHO05D008155 6.1e-09 66.2 85 47.1
Eucgr.G00935 Eucalyptus grandis HOM05D006342 ORTHO05D008155 1.7e-06 58.2 80 47.5


User provided reference genes

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