Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 1.1e-45 186.4 102 100.0
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 1.9e-34 149.1 99 74.7
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 7.2e-34 147.1 96 77.1
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 9.4e-34 146.7 97 75.3
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 4.7e-33 144.4 98 72.4
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 6.1e-33 144.1 100 71.0
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 8.0e-33 143.7 97 72.2
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.0e-32 143.3 97 73.2
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 1.0e-32 143.3 97 72.2
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 2.3e-32 142.1 99 68.7
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.0e-32 141.7 97 73.2
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 8.8e-32 140.2 97 72.2
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 8.8e-32 140.2 98 70.4
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.2e-31 139.8 100 72.0
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 1.5e-31 139.4 100 70.0
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.5e-31 139.4 97 69.1
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.0e-31 139.0 100 67.0
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 2.6e-31 138.7 102 70.6
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 2.6e-31 138.7 101 69.3
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 3.4e-31 138.3 95 70.5
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 3.4e-31 138.3 100 69.0
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 3.4e-31 138.3 100 73.0
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 3.4e-31 138.3 97 71.1
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 4.4e-31 137.9 95 69.5
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 5.7e-31 137.5 98 70.4
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 5.7e-31 137.5 100 72.0
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 7.5e-31 137.1 97 70.1
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 7.5e-31 137.1 97 67.0
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 7.5e-31 137.1 97 71.1
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 7.5e-31 137.1 100 70.0
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 9.8e-31 136.7 95 70.5
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.3e-30 136.3 95 70.5
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.3e-30 136.3 95 70.5
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.3e-30 136.3 97 68.0
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 1.3e-30 136.3 97 70.1
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.3e-30 136.3 100 71.0
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 1.3e-30 136.3 100 71.0
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.3e-30 136.3 97 71.1
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 1.3e-30 136.3 97 68.0
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.7e-30 136.0 97 73.2
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.7e-30 136.0 97 69.1
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.7e-30 136.0 100 66.0
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 2.2e-30 135.6 100 70.0
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 2.8e-30 135.2 95 69.5
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 2.8e-30 135.2 98 67.3
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 2.8e-30 135.2 97 69.1
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 2.8e-30 135.2 100 69.0
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 3.7e-30 134.8 100 68.0
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 3.7e-30 134.8 98 68.4
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 3.7e-30 134.8 97 67.0
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 4.8e-30 134.4 95 67.4
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 4.8e-30 134.4 100 67.0
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 6.3e-30 134.0 97 66.0
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 6.3e-30 134.0 97 67.0
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 6.3e-30 134.0 95 73.7
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 6.3e-30 134.0 95 67.4
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 8.3e-30 133.7 95 65.3
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 8.3e-30 133.7 100 66.0
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 8.3e-30 133.7 100 64.0
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 1.1e-29 133.3 97 67.0
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.1e-29 133.3 97 66.0
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 1.8e-29 132.5 100 72.0
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 1.8e-29 132.5 97 69.1
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.8e-29 132.5 97 71.1
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.8e-29 132.5 97 67.0
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.4e-29 132.1 97 67.0
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 3.1e-29 131.7 97 68.0
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 3.1e-29 131.7 97 67.0
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 4.1e-29 131.3 100 65.0
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 4.1e-29 131.3 97 66.0
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 5.4e-29 131.0 97 66.0
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 7.0e-29 130.6 99 65.7
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 7.0e-29 130.6 97 66.0
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 7.0e-29 130.6 97 67.0
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 9.1e-29 130.2 95 64.2
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 2.0e-28 129.0 97 67.0
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.0e-28 129.0 97 64.9
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 2.7e-28 128.6 97 63.9
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 3.5e-28 128.3 84 72.6
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 4.5e-28 127.9 100 65.0
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.0e-27 126.7 97 66.0
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.0e-27 126.7 104 61.5
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.0e-27 126.7 104 61.5
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.0e-27 126.7 100 63.0
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 1.3e-27 126.3 98 65.3
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 1.3e-27 126.3 98 65.3
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.3e-27 126.3 102 58.8
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 1.7e-27 125.9 98 65.3
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 1.7e-27 125.9 98 65.3
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 1.7e-27 125.9 97 67.0
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 2.3e-27 125.6 100 63.0
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 2.3e-27 125.6 100 62.0
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 5.0e-27 124.4 100 60.0
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 5.0e-27 124.4 97 61.9
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 8.6e-27 123.6 100 62.0
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 8.6e-27 123.6 97 61.9
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 8.6e-27 123.6 97 62.9
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 1.1e-26 123.2 97 66.0
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.5e-26 122.9 100 61.0
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 1.5e-26 122.9 98 65.3
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.9e-26 122.5 97 59.8
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 1.9e-26 122.5 97 66.0
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 3.3e-26 121.7 104 60.6
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 4.2e-26 121.3 81 69.1
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 7.2e-26 120.6 97 61.9
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 9.5e-26 120.2 81 69.1
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.2e-25 119.8 118 58.5
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 3.6e-25 118.2 81 66.7
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.6e-25 118.2 97 57.7
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 3.6e-25 118.2 99 63.6
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 6.1e-25 117.5 95 58.9
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 6.1e-25 117.5 98 59.2
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 8.0e-25 117.1 81 69.1
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.0e-24 116.7 81 74.1
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 1.8e-24 115.9 81 67.9
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.3e-24 115.5 90 65.6
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 5.2e-24 114.4 81 64.2
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.6e-23 112.1 100 62.0
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 2.6e-23 112.1 81 67.9
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 2.6e-23 112.1 81 67.9
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 9.8e-23 110.2 78 65.4
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 1.3e-22 109.8 132 49.2
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 1.7e-22 109.4 95 61.1
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 1.1e-21 106.7 83 65.1
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.4e-21 105.5 80 60.0
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 4.1e-21 104.8 82 64.6
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 5.9e-20 100.9 98 55.1
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 7.8e-20 100.5 94 54.3
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 8.6e-19 97.1 94 56.4
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.5e-18 96.3 94 54.3
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.3e-18 95.1 94 54.3
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 1.2e-17 93.2 81 58.0
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 2.8e-17 92.0 66 68.2
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.3e-16 89.0 82 53.7
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 1.5e-15 86.3 93 51.6
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 9.8e-15 83.6 68 57.4
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.3e-14 83.2 94 46.8
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.7e-14 82.8 94 43.6
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.2e-12 76.6 94 42.6
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 3.5e-12 75.1 59 66.1
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 2.3e-11 72.4 60 60.0
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 8.0e-09 63.9 41 75.6
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.8e-08 62.8 46 65.2
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 3.1e-08 62.0 101 35.6
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 6.8e-08 60.8 96 40.6
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 5.8e-07 57.8 59 54.2
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 3.7e-06 55.1 59 52.5


User provided reference genes

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