Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 2.1e-52 208.8 107 100.0
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.9e-32 142.5 99 70.7
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 5.4e-32 141.0 99 70.7
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.2e-31 139.8 99 69.7
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 4.6e-31 137.9 102 64.7
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.3e-30 135.6 101 65.3
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 2.3e-30 135.6 89 71.9
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 5.1e-30 134.4 100 69.0
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 6.6e-30 134.0 99 66.7
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 6.6e-30 134.0 99 68.7
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.9e-29 132.5 93 72.0
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 1.9e-29 132.5 103 64.1
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 3.3e-29 131.7 101 66.3
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 9.6e-29 130.2 100 64.0
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 9.6e-29 130.2 100 64.0
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 9.6e-29 130.2 99 67.7
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 9.6e-29 130.2 99 63.6
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 1.3e-28 129.8 82 72.0
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 2.1e-28 129.0 83 72.3
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 2.1e-28 129.0 101 63.4
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 2.8e-28 128.6 82 69.5
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 3.6e-28 128.3 102 65.7
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 6.2e-28 127.5 99 63.6
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 8.1e-28 127.1 110 60.9
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 8.1e-28 127.1 99 62.6
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.1e-27 126.7 77 75.3
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.1e-27 126.7 102 64.7
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.4e-27 126.3 99 62.6
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.4e-27 126.3 94 63.8
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.8e-27 125.9 99 66.7
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 1.8e-27 125.9 108 60.2
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 4.0e-27 124.8 82 68.3
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 4.0e-27 124.8 99 63.6
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 4.0e-27 124.8 102 61.8
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 4.0e-27 124.8 77 74.0
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.2e-26 123.2 102 58.8
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.2e-26 123.2 83 68.7
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 1.5e-26 122.9 96 61.5
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.0e-26 122.5 92 69.6
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 2.0e-26 122.5 102 63.7
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 3.4e-26 121.7 83 67.5
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 3.4e-26 121.7 102 63.7
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 4.5e-26 121.3 83 73.5
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 5.8e-26 120.9 99 60.6
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 5.8e-26 120.9 99 61.6
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 7.6e-26 120.6 99 62.6
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 7.6e-26 120.6 112 58.9
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 7.6e-26 120.6 83 71.1
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 7.6e-26 120.6 83 71.1
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 7.6e-26 120.6 93 64.5
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 9.9e-26 120.2 102 62.7
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 9.9e-26 120.2 94 64.9
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 1.3e-25 119.8 99 62.6
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 1.3e-25 119.8 106 59.4
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.3e-25 119.8 82 69.5
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.3e-25 119.8 96 66.7
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 1.7e-25 119.4 97 61.9
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.7e-25 119.4 100 63.0
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 2.2e-25 119.0 99 60.6
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 2.2e-25 119.0 86 64.0
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 2.9e-25 118.6 82 67.1
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.9e-25 118.6 107 58.9
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 3.8e-25 118.2 101 60.4
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.8e-25 118.2 121 55.4
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 3.8e-25 118.2 73 76.7
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 4.9e-25 117.9 76 75.0
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 4.9e-25 117.9 77 68.8
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 8.4e-25 117.1 111 56.8
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 8.4e-25 117.1 99 59.6
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 8.4e-25 117.1 99 60.6
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 1.4e-24 116.3 99 59.6
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.4e-24 116.3 99 60.6
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 1.4e-24 116.3 95 57.9
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 1.9e-24 115.9 101 58.4
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 1.9e-24 115.9 99 59.6
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.9e-24 115.9 72 69.4
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 2.4e-24 115.5 99 59.6
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 2.4e-24 115.5 101 57.4
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.2e-24 115.2 76 67.1
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 3.2e-24 115.2 99 57.6
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 4.2e-24 114.8 75 73.3
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 5.4e-24 114.4 99 64.6
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 5.4e-24 114.4 102 60.8
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 7.1e-24 114.0 78 69.2
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 7.1e-24 114.0 101 61.4
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 7.1e-24 114.0 102 59.8
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 1.2e-23 113.2 77 67.5
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 1.2e-23 113.2 103 56.3
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 1.2e-23 113.2 71 69.0
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 2.7e-23 112.1 99 56.6
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 2.7e-23 112.1 97 58.8
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 2.7e-23 112.1 99 56.6
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 2.7e-23 112.1 97 58.8
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 2.7e-23 112.1 99 56.6
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 2.7e-23 112.1 97 58.8
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 2.7e-23 112.1 97 58.8
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 3.5e-23 111.7 93 61.3
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 3.5e-23 111.7 76 69.7
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 3.5e-23 111.7 73 72.6
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 4.6e-23 111.3 101 58.4
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 6.0e-23 110.9 95 56.8
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 6.0e-23 110.9 95 56.8
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 6.0e-23 110.9 89 60.7
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 1.0e-22 110.2 95 60.0
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.0e-22 110.2 117 54.7
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.3e-22 109.0 66 72.7
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 2.3e-22 109.0 71 69.0
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 2.3e-22 109.0 73 67.1
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 3.9e-22 108.2 103 58.3
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 5.1e-22 107.8 99 54.5
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 5.1e-22 107.8 75 65.3
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 6.7e-22 107.5 82 62.2
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 6.7e-22 107.5 85 60.0
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 1.1e-21 106.7 84 64.3
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 1.1e-21 106.7 84 64.3
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 1.5e-21 106.3 81 60.5
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 1.9e-21 105.9 96 58.3
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 1.9e-21 105.9 96 58.3
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.5e-21 105.5 71 73.2
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.5e-21 105.5 71 73.2
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 3.3e-21 105.1 103 55.3
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 3.3e-21 105.1 99 58.6
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 5.6e-21 104.4 77 67.5
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 5.6e-21 104.4 101 55.4
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 7.4e-21 104.0 99 52.5
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 1.3e-20 103.2 103 56.3
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.6e-20 102.8 99 57.6
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 6.9e-19 97.4 60 81.7
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 6.9e-19 97.4 90 52.2
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 2.0e-18 95.9 102 53.9
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 5.8e-18 94.4 109 49.5
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.9e-16 89.4 71 54.9
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.2e-16 88.6 91 45.1
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 1.5e-13 79.7 103 44.7
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 9.6e-13 77.0 79 49.4
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 2.1e-12 75.9 90 44.4
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 3.7e-12 75.1 76 51.3
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.1e-11 73.6 76 47.4
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 4.0e-11 71.6 77 46.8
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 7.6e-10 67.4 116 39.7
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 7.6e-10 67.4 95 40.0
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.0e-09 67.0 107 41.1
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 6.5e-09 64.3 65 50.8


User provided reference genes

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