Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 1.7e-227 792.3 405 100.0
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.4e-85 320.9 271 63.1
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 1.4e-85 320.9 342 54.4
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 3.7e-81 306.2 344 52.0
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 5.3e-80 302.4 620 36.8
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 9.1e-80 301.6 532 40.8
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 1.0e-78 298.1 285 56.8
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 3.3e-74 283.1 491 42.0
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 4.4e-74 282.7 356 48.9
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 4.8e-73 279.3 296 53.0
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.8e-72 277.3 263 55.5
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 2.4e-72 276.9 238 59.2
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.6e-71 274.2 532 38.5
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 5.9e-71 272.3 401 44.4
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 3.2e-69 266.5 462 40.0
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 5.5e-69 265.8 363 44.6
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 9.4e-69 265.0 249 59.4
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 2.7e-68 263.5 244 58.6
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 6.1e-68 262.3 267 54.7
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 6.1e-68 262.3 363 44.4
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 4.0e-67 259.6 246 56.5
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 1.5e-66 257.7 279 50.9
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 2.0e-66 257.3 264 56.4
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 1.3e-65 254.6 257 51.8
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.3e-65 254.6 244 57.8
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 2.2e-65 253.8 506 38.5
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 2.2e-65 253.8 505 39.0
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 2.2e-65 253.8 219 61.2
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 4.8e-65 252.7 531 35.4
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 6.3e-65 252.3 505 37.2
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 1.1e-64 251.5 482 40.0
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 1.1e-64 251.5 592 33.6
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 3.1e-64 250.0 241 56.8
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 4.1e-64 249.6 516 38.6
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 2.0e-63 247.3 242 56.2
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 2.0e-63 247.3 243 55.1
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 4.5e-63 246.1 509 36.1
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 1.3e-62 244.6 263 54.4
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 1.7e-62 244.2 241 56.0
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 2.9e-62 243.4 367 42.5
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 2.9e-62 243.4 363 43.3
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 5.5e-61 239.2 294 48.3
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 2.1e-60 237.3 246 54.9
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 2.8e-60 236.9 371 43.1
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 3.6e-60 236.5 252 55.6
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 3.6e-60 236.5 597 34.3
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 1.4e-59 234.6 263 49.8
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 3.0e-59 233.4 244 53.7
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 3.0e-59 233.4 346 43.1
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 4.0e-59 233.0 227 57.3
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 8.9e-59 231.9 489 35.8
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.6e-58 230.3 389 41.9
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 2.6e-58 230.3 339 46.6
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 9.8e-58 228.4 363 44.9
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.7e-57 227.6 265 50.6
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 2.8e-57 226.9 366 42.9
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.8e-57 226.9 366 42.9
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 3.7e-57 226.5 263 51.3
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 4.9e-57 226.1 574 35.0
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 8.3e-57 225.3 241 53.1
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 2.4e-56 223.8 313 46.3
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 2.4e-56 223.8 525 33.1
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 5.4e-56 222.6 405 40.2
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 9.2e-56 221.9 493 36.3
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 9.2e-56 221.9 267 50.9
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 9.2e-56 221.9 454 36.8
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 2.7e-55 220.3 247 52.2
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 7.8e-55 218.8 422 39.6
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 1.7e-54 217.6 313 43.8
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 1.7e-54 217.6 506 32.2
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 5.0e-54 216.1 575 32.0
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 8.6e-54 215.3 233 52.8
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 8.6e-54 215.3 251 49.4
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 3.3e-53 213.4 308 42.2
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 3.3e-53 213.4 241 49.4
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 9.5e-53 211.8 241 49.0
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 1.0e-51 208.4 239 51.9
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 1.0e-51 208.4 297 45.1
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 5.2e-51 206.1 410 35.1
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 1.2e-50 204.9 290 46.2
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 1.5e-50 204.5 234 50.9
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 2.6e-50 203.8 255 49.8
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 2.2e-49 200.7 529 34.0
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 1.4e-48 198.0 258 49.2
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 1.9e-48 197.6 258 49.2
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 2.4e-48 197.2 382 39.0
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 3.2e-48 196.8 308 40.3
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 3.2e-48 196.8 345 40.6
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 9.2e-48 195.3 375 38.9
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 1.6e-47 194.5 219 51.1
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 2.0e-47 194.1 282 44.3
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 5.0e-46 189.5 383 36.3
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 1.5e-45 188.0 373 37.5
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 1.9e-45 187.6 523 32.5
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 1.9e-45 187.6 385 37.9
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 5.6e-45 186.0 430 36.3
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 7.3e-45 185.7 469 33.7
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 9.5e-45 185.3 523 32.5
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 9.5e-45 185.3 523 32.5
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 9.5e-45 185.3 519 31.8
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 9.5e-45 185.3 517 32.1
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 1.6e-44 184.5 287 44.3
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 3.6e-44 183.3 264 45.8
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 1.1e-43 181.8 240 45.4
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 3.1e-43 180.3 247 45.3
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 6.8e-43 179.1 339 40.4
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 7.0e-40 169.1 447 34.5
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 1.6e-39 167.9 424 32.5
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 6.0e-39 166.0 214 46.3
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 3.0e-38 163.7 280 41.1
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 2.2e-33 147.5 257 40.1
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 1.4e-32 144.8 185 48.6
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 2.4e-32 144.1 391 33.2
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 3.3e-29 133.7 239 39.3
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 1.2e-28 131.7 94 68.1
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 6.2e-28 129.4 424 29.5
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 2.2e-25 120.9 156 48.1
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 1.2e-23 115.2 153 45.1
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 1.4e-19 101.7 71 63.4
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 3.4e-18 97.1 148 44.6
BolC8t48423H Brassica oleracea HOM05D004882 ORTHO05D005551 5.8e-18 96.3 233 33.9
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 7.6e-18 95.9 213 35.7
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 9.9e-18 95.5 116 50.0
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 3.8e-17 93.6 204 37.3
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 1.0e-14 85.5 81 53.1
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 1.3e-12 78.6 59 62.7
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.5e-10 71.6 61 60.7
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.7e-09 68.2 55 60.0
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 2.9e-09 67.4 48 58.3
Zm00001eb205120 Zea mays HOM05D004882 ORTHO05D005551 1.2e-07 62.0 146 34.2
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 3.5e-07 60.5 45 60.0
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 7.9e-07 59.3 342 24.3
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.8e-06 58.2 143 35.7
Nn8g41058 Nelumbo nucifera HOM05D004882 ORTHO05D005551 3.0e-06 57.4 53 50.9
Nn5g30227 Nelumbo nucifera HOM05D004882 ORTHO05D005551 8.7e-06 55.8 46 63.0


User provided reference genes

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