Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A337T44 Lonicera japonica HOM05D001568 ORTHO05D008804 3.4e-135 485.0 240 100.0
Hma1.2p1_0661F.1_g198113 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 1.4e-104 383.3 229 79.0
Atru.chr5.2305 Acer truncatum HOM05D001568 ORTHO05D008804 4.1e-104 381.7 231 78.8
CSS0011887 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D008804 1.3e-102 376.7 228 80.3
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 2.9e-102 375.6 229 79.5
Rhsim05G0092700 Rhododendron simsii HOM05D001568 ORTHO05D008804 8.5e-102 374.0 228 78.1
Cfa004706 Carpinus fangiana HOM05D001568 ORTHO05D008804 1.9e-101 372.9 230 77.4
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 2.5e-101 372.5 231 78.8
Manes.07G057400 Manihot esculenta HOM05D001568 ORTHO05D008804 9.5e-101 370.5 231 77.1
CiPaw.05G020500 Carya illinoinensis HOM05D001568 ORTHO05D008804 6.1e-100 367.9 229 77.3
Haze_10309 Corylus avellana HOM05D001568 ORTHO05D008804 8.0e-100 367.5 230 76.1
Cfa004705 Carpinus fangiana HOM05D001568 ORTHO05D008804 1.0e-99 367.1 228 77.6
RcHm_v2.0_Chr6g0248601 Rosa chinensis HOM05D001568 ORTHO05D008804 1.4e-99 366.7 228 76.3
DCAR_001738 Daucus carota HOM05D001568 ORTHO05D008804 3.0e-99 365.5 231 75.3
CANSAT25G3386 Cannabis sativa HOM05D001568 ORTHO05D008804 5.2e-99 364.8 229 76.0
MD10G1109100 Malus domestica HOM05D001568 ORTHO05D008804 6.8e-99 364.4 233 74.2
TWI14G1141 Tripterygium wilfordii HOM05D001568 ORTHO05D008804 6.8e-99 364.4 229 74.2
HanXRQChr03g0072921 Helianthus annuus HOM05D001568 ORTHO05D008804 8.8e-99 364.0 232 77.2
Thecc.02G119500 Theobroma cacao HOM05D001568 ORTHO05D008804 1.2e-98 363.6 231 74.9
Cc00_g17990 Coffea canephora HOM05D001568 ORTHO05D008804 1.5e-98 363.2 228 78.1
Solyc01g106880.3 Solanum lycopersicum HOM05D001568 ORTHO05D008804 1.5e-98 363.2 229 76.0
TAR628G1281 Trochodendron aralioides HOM05D001568 ORTHO05D008804 2.6e-98 362.5 229 75.1
FAN15G2988 Fragaria x ananassa HOM05D001568 ORTHO05D008804 4.4e-98 361.7 228 74.6
Actinidia04394 Actinidia chinensis HOM05D001568 ORTHO05D008804 7.5e-98 360.9 224 76.8
EL10Ac9g22185 Beta vulgaris HOM05D001568 ORTHO05D008804 7.5e-98 360.9 229 75.5
Migut.B00460 Erythranthe guttata HOM05D001568 ORTHO05D008804 1.3e-97 360.1 229 77.3
FvH4_2g03440 Fragaria vesca HOM05D001568 ORTHO05D008804 1.3e-97 360.1 229 74.2
Prupe.8G149200 Prunus persica HOM05D001568 ORTHO05D008804 1.7e-97 359.8 229 74.2
Sopen01g049160 Solanum pennellii HOM05D001568 ORTHO05D008804 1.7e-97 359.8 229 75.5
Gorai.008G019500 Gossypium raimondii HOM05D001568 ORTHO05D008804 2.2e-97 359.4 231 73.6
ECA240G3857 Erigeron canadensis HOM05D001568 ORTHO05D008804 4.9e-97 358.2 231 75.3
Potri.001G290100 Populus trichocarpa HOM05D001568 ORTHO05D008804 4.9e-97 358.2 229 75.1
arahy.Tifrunner.gnm1.ann1.ESII2D Arachis hypogaea HOM05D001568 ORTHO05D008804 6.3e-97 357.8 229 75.1
CAN.G606.69 Capsicum annuum HOM05D001568 ORTHO05D008804 1.1e-96 357.1 229 75.5
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 1.1e-96 357.1 227 75.3
arahy.Tifrunner.gnm1.ann1.804FU2 Arachis hypogaea HOM05D001568 ORTHO05D008804 1.4e-96 356.7 229 74.7
Gohir.A12G018701 Gossypium hirsutum HOM05D001568 ORTHO05D008804 1.8e-96 356.3 231 73.2
Ca_11027_v3 Cicer arietinum L. HOM05D001568 ORTHO05D008804 3.1e-96 355.5 228 73.7
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 4.1e-96 355.1 230 76.1
Nitab4.5_0001099g0070 Nicotiana tabacum HOM05D001568 ORTHO05D008804 5.4e-96 354.8 227 74.0
Nitab4.5_0010145g0020 Nicotiana tabacum HOM05D001568 ORTHO05D008804 2.7e-95 352.4 232 71.6
PSO017G1092 Papaver somniferum HOM05D001568 ORTHO05D008804 2.7e-95 352.4 229 72.1
Nn5g30645 Nelumbo nucifera HOM05D001568 ORTHO05D008804 4.5e-95 351.7 229 72.9
Glyma.20G135600 Glycine max HOM05D001568 ORTHO05D008804 1.0e-94 350.5 231 73.2
PSO170G6576 Papaver somniferum HOM05D001568 ORTHO05D008804 1.7e-94 349.7 229 71.6
QL11p029473 Quercus lobata HOM05D001568 ORTHO05D008804 1.7e-94 349.7 284 62.3
Medtr1g106055 Medicago truncatula HOM05D001568 ORTHO05D008804 2.9e-94 349.0 231 71.0
Peaxi162Scf00016g03020 Petunia axillaris HOM05D001568 ORTHO05D008804 3.8e-94 348.6 258 67.1
Sc14g0002500 Simmondsia chinensis HOM05D001568 ORTHO05D008804 8.6e-94 347.4 229 75.5
MBI16_g16470_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D008804 1.1e-93 347.1 228 71.9
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 5.6e-93 344.7 237 72.6
unitig_744.g24207 Utricularia gibba HOM05D001568 ORTHO05D008804 7.3e-93 344.4 228 70.6
Lsat_1_v5_gn_9_113380 Lactuca sativa HOM05D001568 ORTHO05D008804 9.5e-93 344.0 227 74.4
TPR.G21139 Trifolium pratense HOM05D001568 ORTHO05D008804 2.1e-92 342.8 229 70.3
Aqoxy1G00265 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 2.3e-91 339.3 234 70.5
Lalb_Chr06g0165001 Lupinus albus HOM05D001568 ORTHO05D008804 5.2e-91 338.2 229 72.1
SalBow6G4520 Salvia bowleyana HOM05D001568 ORTHO05D008804 6.8e-91 337.8 258 66.3
Thhalv10011739m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 1.5e-90 336.7 229 69.4
AT1G50000 Arabidopsis thaliana HOM05D001568 ORTHO05D008804 3.4e-90 335.5 231 68.0
COL.COLO4_32489 Corchorus olitorius HOM05D001568 ORTHO05D008804 3.4e-90 335.5 231 70.1
CsaV3_7G007700 Cucumis sativus L. HOM05D001568 ORTHO05D008804 3.4e-90 335.5 229 68.6
Hma1.2p1_0661F.1_g198116 Hydrangea macrophylla HOM05D001568 ORTHO05D008804 3.4e-90 335.5 203 79.8
MELO3C018530.2 Cucumis melo HOM05D001568 ORTHO05D008804 5.7e-90 334.7 229 68.1
VMungo0720G2114 Vigna mungo HOM05D001568 ORTHO05D008804 7.5e-90 334.3 228 71.1
CDE04G1257 Ceratophyllum demersum HOM05D001568 ORTHO05D008804 9.8e-90 334.0 230 68.3
ATR0739G203 Amborella trichopoda HOM05D001568 ORTHO05D008804 1.7e-89 333.2 229 67.7
Lj1g0020001 Lotus japonicus HOM05D001568 ORTHO05D008804 3.7e-89 332.0 229 67.7
AL1G57570 Arabidopsis lyrata HOM05D001568 ORTHO05D008804 4.9e-89 331.6 229 68.1
Sp1g36840 Schrenkiella parvula HOM05D001568 ORTHO05D008804 2.4e-88 329.3 229 68.1
SpUn0137_0040 Schrenkiella parvula HOM05D001568 ORTHO05D008804 2.4e-88 329.3 229 68.1
Carub.0151s0002 Capsella rubella HOM05D001568 ORTHO05D008804 4.1e-88 328.6 229 67.2
BcaB07g33452 Brassica carinata HOM05D001568 ORTHO05D008804 7.0e-88 327.8 229 66.8
THA.LOC104826496 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 7.0e-88 327.8 229 68.1
ClCG02G007120 Citrullus lanatus HOM05D001568 ORTHO05D008804 1.2e-87 327.0 225 68.4
THA.LOC104826495 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 1.2e-87 327.0 229 68.1
AUR62027019 Chenopodium quinoa HOM05D001568 ORTHO05D008804 7.8e-87 324.3 217 75.1
BcaC08g43178 Brassica carinata HOM05D001568 ORTHO05D008804 1.0e-86 323.9 228 66.2
A06p03430 Brassica napus HOM05D001568 ORTHO05D008804 4.3e-85 318.5 229 65.9
BolC6t35607H Brassica oleracea HOM05D001568 ORTHO05D008804 9.5e-85 317.4 229 65.9
C06p04780 Brassica napus HOM05D001568 ORTHO05D008804 1.2e-84 317.0 229 65.9
Gohir.D12G019200 Gossypium hirsutum HOM05D001568 ORTHO05D008804 6.2e-84 314.7 231 67.5
BraA06t23551Z Brassica rapa HOM05D001568 ORTHO05D008804 1.0e-83 313.9 231 64.9
Os03g0729700 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D008804 4.0e-83 312.0 228 64.9
CARHR040100 Cardamine hirsuta HOM05D001568 ORTHO05D008804 3.4e-82 308.9 217 67.7
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 3.4e-82 308.9 261 64.4
AUR62030859 Chenopodium quinoa HOM05D001568 ORTHO05D008804 5.8e-82 308.1 205 75.6
HPP92_026588 Vanilla planifolia HOM05D001568 ORTHO05D008804 6.0e-79 298.1 229 62.0
PGR142G1084 Punica granatum HOM05D001568 ORTHO05D008804 3.9e-78 295.4 202 71.3
Aa31LG10G4130 Aethionema arabicum HOM05D001568 ORTHO05D008804 1.1e-75 287.3 204 67.2
Ah.01g007040 Amaranthus hybridus HOM05D001568 ORTHO05D008804 1.9e-72 276.6 183 71.0
Phvul.007G046900 Phaseolus vulgaris HOM05D001568 ORTHO05D008804 7.1e-72 274.6 184 70.7
Sabra16G0181700 Salix brachista HOM05D001568 ORTHO05D008804 3.3e-69 265.8 213 66.7
AagrBONN_evm.TU.Sc2ySwM_362.475 Anthoceros agrestis HOM05D001568 ORTHO05D008804 4.4e-66 255.4 227 55.1
Psat6g214440 Pisum sativum HOM05D001568 ORTHO05D008804 3.3e-61 239.2 148 74.3
THA.LOC104809178 Tarenaya hassleriana HOM05D001568 ORTHO05D008804 3.3e-61 239.2 164 70.1
Mapoly0081s0053 Marchantia polymorpha HOM05D001568 ORTHO05D008804 4.7e-60 235.3 228 50.9
Pp3c3_17050 Physcomitrium patens HOM05D001568 ORTHO05D008804 1.4e-59 233.8 230 50.9
SMO358G0428 Selaginella moellendorffii HOM05D001568 ORTHO05D008804 2.9e-57 226.1 233 48.5
Sed0001597 Sechium edule HOM05D001568 ORTHO05D008804 3.8e-57 225.7 229 52.0
FAN24G1144 Fragaria x ananassa HOM05D001568 ORTHO05D008804 2.7e-55 219.5 130 79.2
CBR_g48696 Chara braunii HOM05D001568 ORTHO05D008804 2.5e-53 213.0 231 46.8
Aqoxy335s004 Aquilegia oxysepala HOM05D001568 ORTHO05D008804 6.7e-46 188.3 123 74.0
Manes.10G086502 Manihot esculenta HOM05D001568 ORTHO05D008804 8.7e-46 188.0 222 45.0
TAR376G0809 Trochodendron aralioides HOM05D001568 ORTHO05D008804 9.6e-45 184.5 140 69.3
FAN24G0164 Fragaria x ananassa HOM05D001568 ORTHO05D008804 1.1e-35 154.5 110 66.4
MCO02G312 Micromonas commoda HOM05D001568 ORTHO05D008804 3.5e-31 139.4 170 44.7
MSTRG.20236 Avicennia marina HOM05D001568 ORTHO05D008804 4.3e-29 132.5 98 67.3
Thhalv10012254m.g Eutrema salsugineum HOM05D001568 ORTHO05D008804 5.3e-27 125.6 98 60.2
Cre03.g175800 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D008804 1.4e-24 117.5 342 29.2
PRCOL_00000434 Prasinoderma coloniale HOM05D001568 ORTHO05D008804 3.7e-20 102.8 230 32.2
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 4.1e-19 99.4 102 53.9
RhsimUnG0183700 Rhododendron simsii HOM05D002338 ORTHO05D006706 4.1e-19 99.4 102 53.9
Ah.01g007020 Amaranthus hybridus HOM05D001568 ORTHO05D008804 2.6e-13 80.1 49 79.6
Ca_28940_v3 Cicer arietinum L. HOM05D001568 ORTHO05D148655 1.2e-10 71.2 238 23.9
C05p34140 Brassica napus HOM05D001568 ORTHO05D019891 4.2e-08 62.8 57 50.9
Actinidia27998 Actinidia chinensis HOM05D001568 ORTHO05D008804 7.2e-08 62.0 34 82.4
BcaC05g27454 Brassica carinata HOM05D001568 ORTHO05D019891 7.2e-08 62.0 57 49.1
BcaC05g27456 Brassica carinata HOM05D001568 ORTHO05D019891 7.2e-08 62.0 57 49.1
BolC5t32148H Brassica oleracea HOM05D058656 ORTHO05D019891 1.6e-07 60.8 49 55.1
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 2.3e-06 57.0 46 56.5


User provided reference genes

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