Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 3.4e-247 857.8 421 100.0
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 4.0e-211 738.0 421 83.6
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.2e-207 726.5 421 82.9
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 2.0e-207 725.7 420 82.6
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 4.5e-207 724.5 420 82.6
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.3e-206 723.0 421 82.2
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 1.7e-206 722.6 419 81.9
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 1.2e-204 716.5 418 79.9
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 4.7e-204 714.5 371 94.1
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 4.7e-204 714.5 419 81.1
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 8.0e-204 713.8 417 80.6
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 1.0e-203 713.4 420 81.2
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 3.0e-203 711.8 420 81.4
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 2.0e-202 709.1 420 81.2
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 3.4e-202 708.4 418 80.6
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 3.4e-202 708.4 420 81.4
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 9.8e-202 706.8 434 79.0
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.7e-201 706.1 419 80.7
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.2e-201 705.7 418 79.7
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 2.2e-201 705.7 417 80.8
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 2.2e-201 705.7 437 78.5
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 2.8e-201 705.3 419 80.9
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 6.3e-201 704.1 420 80.2
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 6.3e-201 704.1 419 80.4
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 8.3e-201 703.7 418 79.4
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 8.3e-201 703.7 419 80.0
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.4e-200 703.0 419 80.2
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 1.8e-200 702.6 420 79.8
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 4.1e-200 701.4 418 80.1
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 5.4e-200 701.0 418 78.5
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 7.0e-200 700.7 421 79.8
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 7.0e-200 700.7 418 79.9
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 1.2e-199 699.9 421 79.8
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.6e-199 699.5 419 79.2
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 2.0e-199 699.1 418 81.3
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 2.7e-199 698.7 421 80.0
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 4.5e-199 698.0 421 78.4
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 5.9e-199 697.6 459 74.1
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 5.9e-199 697.6 414 78.7
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 7.7e-199 697.2 418 80.6
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 1.0e-198 696.8 416 79.8
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 1.7e-198 696.0 418 78.7
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 1.7e-198 696.0 414 79.2
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 2.3e-198 695.7 418 79.4
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 2.9e-198 695.3 419 80.0
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 5.0e-198 694.5 419 78.5
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 5.0e-198 694.5 419 78.5
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 5.0e-198 694.5 416 78.4
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 6.5e-198 694.1 418 78.2
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 6.5e-198 694.1 417 80.1
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 8.6e-198 693.7 419 78.0
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.5e-197 693.0 419 78.8
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 1.9e-197 692.6 441 76.4
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 3.2e-197 691.8 441 76.4
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 7.2e-197 690.6 418 80.6
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 7.2e-197 690.6 416 78.4
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 9.5e-197 690.3 418 77.3
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.1e-196 689.1 418 77.0
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 2.1e-196 689.1 414 78.5
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 2.1e-196 689.1 414 78.5
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.6e-196 688.3 419 78.3
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 3.6e-196 688.3 417 77.9
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 8.0e-196 687.2 415 79.0
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.0e-195 686.8 414 78.0
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 1.8e-195 686.0 421 77.7
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 1.8e-195 686.0 420 77.9
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 5.2e-195 684.5 419 76.6
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 8.8e-195 683.7 421 79.1
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 8.8e-195 683.7 419 77.6
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 8.8e-195 683.7 421 78.6
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 3.4e-194 681.8 421 78.9
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 4.4e-194 681.4 418 76.1
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 9.8e-194 680.2 418 76.8
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 9.8e-194 680.2 418 76.8
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.3e-193 679.9 418 78.7
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.7e-193 679.5 419 77.6
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 1.1e-192 676.8 417 76.5
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.1e-192 676.8 414 77.3
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.1e-192 676.8 421 78.4
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.8e-192 676.0 437 76.4
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.1e-192 675.2 437 76.7
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 4.1e-192 674.9 414 77.8
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.2e-191 673.3 436 74.5
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.2e-191 673.3 416 77.2
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 2.0e-191 672.5 415 74.9
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 3.5e-191 671.8 437 76.2
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 7.8e-191 670.6 421 75.1
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 7.8e-191 670.6 419 75.7
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 2.9e-190 668.7 421 74.8
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 3.8e-190 668.3 418 74.6
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 2.5e-189 665.6 500 66.4
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 4.3e-189 664.8 451 70.7
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.2e-188 663.3 419 75.2
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 2.1e-188 662.5 415 75.4
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 3.6e-188 661.8 417 74.3
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 3.0e-187 658.7 418 75.1
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 3.0e-187 658.7 418 75.1
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 8.9e-187 657.1 415 74.7
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 8.9e-187 657.1 414 75.6
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 1.2e-186 656.8 418 74.6
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.5e-186 656.4 413 74.8
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 3.4e-186 655.2 418 74.2
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 4.4e-186 654.8 418 74.2
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 4.4e-186 654.8 418 75.4
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 5.7e-186 654.4 414 74.6
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 7.5e-186 654.1 420 76.2
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 1.7e-185 652.9 418 75.6
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 1.7e-185 652.9 418 73.9
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 2.9e-185 652.1 418 74.2
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 3.7e-185 651.7 418 74.4
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 3.7e-185 651.7 408 77.7
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 1.4e-184 649.8 418 77.0
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 3.2e-184 648.7 417 75.1
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 3.2e-184 648.7 414 74.6
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 7.0e-184 647.5 418 74.2
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 7.0e-184 647.5 418 73.2
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 2.7e-183 645.6 421 73.6
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.3e-182 642.5 419 74.0
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 6.6e-182 641.0 417 72.9
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.1e-181 640.2 365 82.7
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 6.2e-180 634.4 417 71.2
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 1.2e-178 630.2 419 74.0
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 1.5e-178 629.8 415 72.3
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 3.4e-178 628.6 412 70.1
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.7e-177 626.3 419 74.5
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 2.9e-177 625.5 412 71.4
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.1e-176 621.7 412 71.6
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.6e-175 619.8 415 71.6
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 3.5e-175 618.6 421 67.9
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 2.5e-173 612.5 413 70.2
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 7.5e-170 600.9 361 78.9
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 1.1e-165 587.0 365 76.4
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 1.2e-164 583.6 341 79.5
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 4.1e-160 568.5 341 79.5
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 1.6e-159 566.6 418 67.5
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 5.1e-158 561.6 415 62.9
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 2.5e-157 559.3 437 65.4
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 1.1e-152 543.9 412 60.7
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 7.1e-152 541.2 418 64.4
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 4.3e-149 531.9 412 60.9
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 1.3e-148 530.4 414 60.1
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 4.9e-137 491.9 429 55.9
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.3e-134 483.0 304 75.3
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.1e-131 472.6 342 66.7
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 3.0e-126 456.1 314 70.7
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 8.2e-124 448.0 302 73.5
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 5.5e-112 408.7 293 68.9
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 1.1e-109 401.0 223 82.1
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 2.0e-109 400.2 402 49.3
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 5.3e-107 392.1 500 41.6
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 8.0e-103 378.3 235 75.3
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 3.3e-101 372.9 409 47.4
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 2.4e-99 366.7 429 44.8
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.1e-95 353.6 198 82.8
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 6.7e-94 348.6 243 67.5
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 6.7e-94 348.6 198 81.8
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 1.3e-81 307.8 221 69.2
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 1.0e-73 281.6 226 63.7
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 5.8e-69 265.8 258 56.2
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 6.4e-68 262.3 174 71.3
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 9.2e-67 258.5 163 75.5
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 3.1e-62 243.4 155 72.3
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.7e-60 237.7 178 66.3
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.3e-57 228.0 167 66.5
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 4.3e-56 223.0 229 52.0
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 2.6e-53 213.8 127 80.3
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 5.8e-53 212.6 124 77.4
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 6.4e-52 209.1 187 57.2
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.5e-50 203.4 121 75.2
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.1e-49 199.5 336 37.8
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.4e-45 186.8 342 36.8
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 8.4e-44 182.2 127 70.1
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.9e-36 157.1 122 61.5
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 1.9e-35 154.5 102 73.5
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 1.6e-31 141.4 88 79.5
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 7.1e-27 125.9 76 73.7
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 9.3e-27 125.6 125 53.6
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 2.3e-25 120.9 71 78.9
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 8.7e-17 92.4 59 76.3
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 2.5e-16 90.9 87 48.3
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 5.6e-16 89.7 98 43.9
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.0e-13 81.3 60 68.3
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 2.8e-07 60.8 35 68.6
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 6.3e-07 59.7 78 32.1
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 2.4e-06 57.8 44 65.9


User provided reference genes

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