Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A321G81 Lonicera japonica HOM05D006149 ORTHO05D007341 8.7e-64 246.9 133 100.0
Sopen01g049800 Solanum pennellii HOM05D006149 ORTHO05D007341 7.9e-49 197.2 125 84.8
PGSC0003DMG400025768 Solanum tuberosum HOM05D006149 ORTHO05D007341 7.9e-49 197.2 125 84.8
Dinv42191 Davidia involucrata HOM05D006149 ORTHO05D007341 1.0e-48 196.8 130 81.5
Solyc01g107610.4 Solanum lycopersicum HOM05D006149 ORTHO05D007341 1.8e-48 196.1 125 84.8
Dinv15763 Davidia involucrata HOM05D006149 ORTHO05D007341 2.3e-48 195.7 131 78.6
Nitab4.5_0005392g0090 Nicotiana tabacum HOM05D006149 ORTHO05D007341 1.5e-47 193.0 126 81.7
Nitab4.5_0002815g0010 Nicotiana tabacum HOM05D006149 ORTHO05D007341 4.4e-47 191.4 126 81.0
CAN.G1231.7 Capsicum annuum HOM05D006149 ORTHO05D007341 2.2e-46 189.1 127 81.1
vmacro19450 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 2.8e-46 188.7 133 75.9
unitig_22.g5723 Utricularia gibba HOM05D006149 ORTHO05D007341 7.0e-45 184.1 134 76.1
Nn4g25119 Nelumbo nucifera HOM05D006149 ORTHO05D007341 1.2e-44 183.3 131 75.6
SGA_v2.0_scaffold225G43080 Striga asiatica HOM05D006149 ORTHO05D007341 2.6e-44 182.2 133 78.2
Rhsim05G0088300 Rhododendron simsii HOM05D006149 ORTHO05D007341 3.5e-44 181.8 134 75.4
Nn1g04703 Nelumbo nucifera HOM05D006149 ORTHO05D007341 7.7e-44 180.6 130 76.2
Migut.B00388 Erythranthe guttata HOM05D006149 ORTHO05D007341 1.1e-42 176.8 139 74.1
SalBow6G4084 Salvia bowleyana HOM05D006149 ORTHO05D007341 1.4e-42 176.4 135 74.1
HanXRQChr03g0070291 Helianthus annuus HOM05D006149 ORTHO05D007341 4.2e-42 174.9 138 76.1
MSTRG.16714 Avicennia marina HOM05D006149 ORTHO05D007341 7.2e-42 174.1 136 72.8
Lsat_1_v5_gn_9_111221 Lactuca sativa HOM05D006149 ORTHO05D007341 2.7e-41 172.2 135 73.3
Ca_11076_v3 Cicer arietinum L. HOM05D006149 ORTHO05D007341 6.1e-41 171.0 122 77.0
ECA240G2462 Erigeron canadensis HOM05D006149 ORTHO05D007341 6.1e-41 171.0 139 72.7
CSS0036049 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 1.4e-40 169.9 126 75.4
Gohir.A03G186300 Gossypium hirsutum HOM05D006149 ORTHO05D007341 1.1e-39 166.8 128 72.7
VMungo0720G1566 Vigna mungo HOM05D006149 ORTHO05D007341 1.5e-39 166.4 122 75.4
TWI32G0763 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 2.0e-39 166.0 121 79.3
TWI34G0529 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 2.0e-39 166.0 125 76.8
Phvul.007G040000 Phaseolus vulgaris HOM05D006149 ORTHO05D007341 2.6e-39 165.6 122 75.4
Potri.001G300300 Populus trichocarpa HOM05D006149 ORTHO05D007341 7.4e-39 164.1 127 74.8
Hund06318 Selenicereus undatus HOM05D006149 ORTHO05D007341 7.4e-39 164.1 136 71.3
COL.COLO4_32597 Corchorus olitorius HOM05D006149 ORTHO05D007341 9.7e-39 163.7 106 82.1
Lj5g0003815 Lotus japonicus HOM05D006149 ORTHO05D007341 9.7e-39 163.7 122 77.0
Sabra09G0073900 Salix brachista HOM05D006149 ORTHO05D007341 9.7e-39 163.7 122 75.4
Glyma.20G128800 Glycine max HOM05D006149 ORTHO05D007341 1.3e-38 163.3 118 76.3
Gohir.D02G207100 Gossypium hirsutum HOM05D006149 ORTHO05D007341 1.3e-38 163.3 126 72.2
Gorai.005G235000 Gossypium raimondii HOM05D006149 ORTHO05D007341 1.3e-38 163.3 126 72.2
TAR628G0594 Trochodendron aralioides HOM05D006149 ORTHO05D007341 1.7e-38 162.9 119 73.1
AUR62039082 Chenopodium quinoa HOM05D006149 ORTHO05D007341 2.2e-38 162.5 133 70.7
Cfa004575 Carpinus fangiana HOM05D006149 ORTHO05D007341 2.8e-38 162.2 121 74.4
Manes.10G076500 Manihot esculenta HOM05D006149 ORTHO05D007341 2.8e-38 162.2 118 72.9
Cpa.g.sc76.22 Carica papaya HOM05D006149 ORTHO05D007341 3.7e-38 161.8 129 70.5
Oeu017469.1 Olea europaea HOM05D006149 ORTHO05D007341 4.8e-38 161.4 131 71.8
Medtr1g107435 Medicago truncatula HOM05D006149 ORTHO05D007341 6.3e-38 161.0 121 75.2
CANSAT25G3711 Cannabis sativa HOM05D006149 ORTHO05D007341 1.1e-37 160.2 131 71.0
Peaxi162Scf00016g02334 Petunia axillaris HOM05D006149 ORTHO05D007341 1.1e-37 160.2 126 73.0
PGR142G0815 Punica granatum HOM05D006149 ORTHO05D007341 1.8e-37 159.5 122 74.6
Rhsim11G0160200 Rhododendron simsii HOM05D006149 ORTHO05D007341 1.8e-37 159.5 181 53.6
Actinidia27971 Actinidia chinensis HOM05D006149 ORTHO05D007341 3.1e-37 158.7 127 68.5
Sc08g0001390 Simmondsia chinensis HOM05D006149 ORTHO05D007341 3.1e-37 158.7 133 72.9
MELO3C019546.2 Cucumis melo HOM05D006149 ORTHO05D007341 5.3e-37 157.9 117 75.2
CDE02G2507 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 7.0e-37 157.5 126 73.8
CsaV3_3G018210 Cucumis sativus L. HOM05D006149 ORTHO05D007341 1.2e-36 156.8 117 74.4
Duzib052G0317 Durio zibethinus HOM05D006149 ORTHO05D007341 1.2e-36 156.8 103 82.5
MD05G1089500 Malus domestica HOM05D006149 ORTHO05D007341 1.2e-36 156.8 124 73.4
Thecc.02G107700 Theobroma cacao HOM05D006149 ORTHO05D007341 2.0e-36 156.0 121 69.4
CDE02G4185 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 2.6e-36 155.6 126 73.0
arahy.Tifrunner.gnm1.ann1.0F7AFP Arachis hypogaea HOM05D006149 ORTHO05D007341 4.5e-36 154.8 123 74.8
Psat6g219120 Pisum sativum HOM05D006149 ORTHO05D007341 4.5e-36 154.8 124 72.6
RcHm_v2.0_Chr6g0255351 Rosa chinensis HOM05D006149 ORTHO05D007341 4.5e-36 154.8 120 75.8
Sed0001717 Sechium edule HOM05D006149 ORTHO05D007341 5.9e-36 154.5 116 75.0
arahy.Tifrunner.gnm1.ann1.GUMB1Z Arachis hypogaea HOM05D006149 ORTHO05D007341 1.3e-35 153.3 123 74.0
Prupe.8G134800 Prunus persica HOM05D006149 ORTHO05D007341 1.3e-35 153.3 116 77.6
DCAR_001643 Daucus carota HOM05D006149 ORTHO05D007341 2.9e-35 152.1 101 78.2
THA.LOC104807242 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 5.0e-35 151.4 96 81.2
Glyma.10G262200 Glycine max HOM05D006149 ORTHO05D007341 6.5e-35 151.0 116 70.7
CDE04G1609 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 2.5e-34 149.1 126 71.4
ATR0618G054 Amborella trichopoda HOM05D006149 ORTHO05D007341 4.2e-34 148.3 122 68.9
ClCG05G010280 Citrullus lanatus HOM05D006149 ORTHO05D007341 9.4e-34 147.1 110 73.6
FAN20G0990 Fragaria x ananassa HOM05D006149 ORTHO05D007341 1.2e-33 146.7 117 73.5
Ciclev10029393m.g Citrus clementina HOM05D006149 ORTHO05D007341 2.1e-33 146.0 116 70.7
PSO675G5876 Papaver somniferum HOM05D006149 ORTHO05D007341 8.0e-33 144.1 130 63.8
MD05G1088900 Malus domestica HOM05D006149 ORTHO05D007341 1.8e-32 142.9 176 54.5
Sabra16G0188500 Salix brachista HOM05D006149 ORTHO05D007341 1.8e-32 142.9 169 55.6
HanXRQChr02g0033021 Helianthus annuus HOM05D006149 ORTHO05D007341 2.3e-32 142.5 118 72.9
HPP92_004777 Vanilla planifolia HOM05D006149 ORTHO05D007341 3.0e-32 142.1 137 65.0
FvH4_2g05220 Fragaria vesca HOM05D006149 ORTHO05D007341 4.0e-32 141.7 86 88.4
FAN15G1894 Fragaria x ananassa HOM05D006149 ORTHO05D007341 4.0e-32 141.7 86 88.4
FAN24G0478 Fragaria x ananassa HOM05D000289 ORTHO05D007341 4.0e-32 141.7 86 88.4
FAN27G1351 Fragaria x ananassa HOM05D000289 ORTHO05D007341 4.0e-32 141.7 86 88.4
PSO541G1364 Papaver somniferum HOM05D006149 ORTHO05D007341 4.0e-32 141.7 128 64.1
Sed0008540 Sechium edule HOM05D006149 ORTHO05D007341 6.8e-32 141.0 111 71.2
SHI05287 Sapria himalayana HOM05D006149 ORTHO05D007341 2.0e-31 139.4 116 69.0
Sp3g28510 Schrenkiella parvula HOM05D006149 ORTHO05D007341 2.6e-31 139.0 130 61.5
Thhalv10022867m.g Eutrema salsugineum HOM05D006149 ORTHO05D007341 3.4e-31 138.7 128 61.7
Lalb_Chr21g0308351 Lupinus albus HOM05D006149 ORTHO05D007341 7.5e-31 137.5 117 66.7
AL3G46990 Arabidopsis lyrata HOM05D006149 ORTHO05D007341 1.3e-30 136.7 131 60.3
AUR62010304 Chenopodium quinoa HOM05D006149 ORTHO05D007341 1.7e-30 136.3 111 69.4
vmacro02004 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 1.7e-30 136.3 156 54.5
Aqoxy3G02908 Aquilegia oxysepala HOM05D006149 ORTHO05D007341 2.2e-30 136.0 136 60.3
QL11p033743 Quercus lobata HOM05D006149 ORTHO05D007341 2.2e-30 136.0 145 59.3
BcaB03g16271 Brassica carinata HOM05D006149 ORTHO05D007341 2.8e-30 135.6 128 60.9
Eucgr.E02957 Eucalyptus grandis HOM05D006149 ORTHO05D007341 3.7e-30 135.2 95 78.9
THA.LOC104819555 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 3.7e-30 135.2 82 85.4
BcaC04g22139 Brassica carinata HOM05D006149 ORTHO05D007341 4.8e-30 134.8 127 59.1
C07p08530 Brassica napus HOM05D006149 ORTHO05D007341 4.8e-30 134.8 127 59.1
BolC7t41265H Brassica oleracea HOM05D006149 ORTHO05D007341 4.8e-30 134.8 127 59.1
BcaC06g36046 Brassica carinata HOM05D006149 ORTHO05D007341 6.3e-30 134.4 127 58.3
Aa31LG8G13110 Aethionema arabicum HOM05D006149 ORTHO05D007341 1.1e-29 133.7 135 57.8
CiPaw.05G011400 Carya illinoinensis HOM05D006149 ORTHO05D007341 2.4e-29 132.5 106 72.6
Os09g0104300 Oryza sativa ssp. japonica HOM05D006149 ORTHO05D007341 2.4e-29 132.5 116 67.2
BcaB08g34585 Brassica carinata HOM05D006149 ORTHO05D007341 7.0e-29 131.0 131 58.0
CARHR105640 Cardamine hirsuta HOM05D006149 ORTHO05D007341 9.1e-29 130.6 125 60.8
A07p05350 Brassica napus HOM05D006149 ORTHO05D007341 3.5e-28 128.6 127 58.3
BraA07t28328Z Brassica rapa HOM05D006149 ORTHO05D007341 3.5e-28 128.6 127 58.3
Carub.0003s2910 Capsella rubella HOM05D006149 ORTHO05D007341 4.5e-28 128.3 123 60.2
AagrBONN_evm.TU.Sc2ySwM_228.2976 Anthoceros agrestis HOM05D006149 ORTHO05D007341 7.7e-28 127.5 121 62.0
Duzib248G1531 Durio zibethinus HOM05D006149 ORTHO05D007341 1.7e-27 126.3 123 62.6
Zm00001eb393310 Zea mays HOM05D006149 ORTHO05D007341 1.7e-27 126.3 76 82.9
AT2G15270 Arabidopsis thaliana HOM05D006149 ORTHO05D007341 2.2e-27 125.9 124 58.9
SMO364G0740 Selaginella moellendorffii HOM05D006149 ORTHO05D007341 3.8e-27 125.2 96 76.0
Pp3c2_21780 Physcomitrium patens HOM05D006149 ORTHO05D007341 5.0e-27 124.8 135 60.7
SEGI_00829 Sequoiadendron giganteum HOM05D006149 ORTHO05D007341 1.1e-26 123.6 112 63.4
Zm00001eb020500 Zea mays HOM05D006149 ORTHO05D007341 1.5e-26 123.2 75 81.3
CANSAT25G0333 Cannabis sativa HOM05D006149 ORTHO05D007341 8.0e-25 117.5 119 61.3
CBR_g44544 Chara braunii HOM05D006149 ORTHO05D007341 6.8e-24 114.4 122 59.0
EL10Ac9g22279 Beta vulgaris HOM05D006149 ORTHO05D007341 3.4e-23 112.1 138 54.3
Pp3c1_15220 Physcomitrium patens HOM05D006149 ORTHO05D007341 3.4e-23 112.1 91 72.5
CSS0028016 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 1.3e-22 110.2 88 70.5
Actinidia05494 Actinidia chinensis HOM05D006149 ORTHO05D007341 3.7e-22 108.6 87 67.8
Mapoly0056s0071 Marchantia polymorpha HOM05D006149 ORTHO05D007341 2.0e-20 102.8 111 56.8
PGR042G0697 Punica granatum HOM05D006149 ORTHO05D007341 4.5e-20 101.7 84 65.5
Haze_10168 Corylus avellana HOM05D006149 ORTHO05D007341 2.5e-18 95.9 243 34.2
Ciclev10006213m.g Citrus clementina HOM05D006149 ORTHO05D007341 2.1e-17 92.8 102 53.9
TAR376G0787 Trochodendron aralioides HOM05D006149 ORTHO05D007341 4.4e-15 85.1 73 61.6
Cre03.g193150 Chlamydomonas reinhardtii HOM05D006149 ORTHO05D007341 5.4e-13 78.2 81 55.6
Ah.01g018230 Amaranthus hybridus HOM05D006149 ORTHO05D007341 3.5e-12 75.5 135 45.2
QL11p033903 Quercus lobata HOM05D006149 ORTHO05D007341 1.7e-11 73.2 46 87.0
SMO197G0096 Selaginella moellendorffii HOM05D024641 ORTHO05D007341 1.9e-10 69.7 52 76.9
MBI12_g27878_MAGBIO Magnolia biondii HOM05D006149 ORTHO05D007341 4.3e-10 68.6 87 51.7
MCO08G345 Micromonas commoda HOM05D006149 ORTHO05D007341 4.0e-08 62.0 90 41.1
Lsat_1_v5_gn_5_63380 Lactuca sativa HOM05D000113 ORTHO05D012184 3.4e-07 58.9 53 58.5
Thecc.04G122800 Theobroma cacao HOM05D006149 ORTHO05D007341 6.4e-06 54.7 42 64.3


User provided reference genes

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