Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 1.0e-93 346.7 170 100.0
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 2.7e-78 295.4 170 83.5
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 3.6e-78 295.0 170 81.2
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 8.0e-78 293.9 170 83.5
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 3.0e-77 292.0 170 81.2
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 3.0e-77 292.0 170 83.5
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 5.2e-77 291.2 170 81.2
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 8.8e-77 290.4 170 81.2
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 8.8e-77 290.4 170 81.8
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 8.8e-77 290.4 170 81.8
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 1.1e-76 290.0 169 82.2
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 1.1e-76 290.0 169 82.2
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 1.5e-76 289.7 170 80.6
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 1.5e-76 289.7 170 81.2
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 2.0e-76 289.3 169 81.7
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 5.7e-76 287.7 169 81.1
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.3e-75 286.6 170 78.8
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 1.7e-75 286.2 170 78.2
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 2.2e-75 285.8 170 79.4
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 2.8e-75 285.4 169 81.7
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 2.8e-75 285.4 170 80.6
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 2.8e-75 285.4 183 77.6
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 3.7e-75 285.0 170 78.8
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 6.3e-75 284.3 169 80.5
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 6.3e-75 284.3 170 79.4
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 8.2e-75 283.9 169 79.9
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 1.4e-74 283.1 170 80.0
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.4e-74 283.1 170 79.4
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 1.4e-74 283.1 170 79.4
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.1e-74 282.0 170 78.8
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 5.3e-74 281.2 170 77.1
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 7.0e-74 280.8 170 78.2
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 9.1e-74 280.4 170 77.1
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.2e-73 280.0 169 78.7
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 1.2e-73 280.0 170 75.3
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.6e-73 279.6 170 75.9
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.6e-73 279.6 170 75.9
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 1.6e-73 279.6 170 78.8
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 3.5e-73 278.5 170 78.2
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 5.9e-73 277.7 170 78.8
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 5.9e-73 277.7 170 75.9
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 7.7e-73 277.3 170 74.1
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 1.7e-72 276.2 170 78.2
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 2.2e-72 275.8 170 72.9
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 2.9e-72 275.4 170 75.9
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 3.8e-72 275.0 171 79.5
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 3.8e-72 275.0 170 78.8
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 1.9e-71 272.7 169 74.0
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 1.9e-71 272.7 170 74.7
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 4.2e-71 271.6 170 76.5
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 5.5e-71 271.2 170 72.9
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 5.5e-71 271.2 170 72.9
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 7.2e-71 270.8 170 74.1
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 9.4e-71 270.4 169 74.6
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 9.4e-71 270.4 170 74.7
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 9.4e-71 270.4 167 77.2
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.6e-70 269.6 170 71.2
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 1.6e-70 269.6 212 66.0
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 3.6e-70 268.5 170 72.4
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.6e-70 268.5 170 75.9
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 3.6e-70 268.5 170 72.9
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 1.0e-69 266.9 170 71.8
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.0e-69 266.9 178 71.9
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 1.4e-69 266.5 170 70.0
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 1.4e-69 266.5 189 71.4
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 2.3e-69 265.8 170 71.8
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 2.3e-69 265.8 204 66.7
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 3.0e-69 265.4 172 70.3
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.0e-69 265.4 178 71.3
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 3.0e-69 265.4 205 63.9
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 3.0e-69 265.4 205 63.9
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 4.0e-69 265.0 170 71.2
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 4.0e-69 265.0 170 72.4
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 4.0e-69 265.0 170 71.2
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 5.2e-69 264.6 170 71.2
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 8.8e-69 263.8 170 71.2
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 8.8e-69 263.8 170 71.2
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 1.2e-68 263.5 170 71.2
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 1.5e-68 263.1 169 72.8
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 1.5e-68 263.1 169 71.0
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 2.6e-68 262.3 169 71.6
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 4.4e-68 261.5 170 71.2
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 7.5e-68 260.8 208 61.1
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.3e-67 260.0 170 70.6
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 2.2e-67 259.2 169 71.0
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 2.8e-67 258.8 170 70.0
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 2.8e-67 258.8 170 70.6
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 2.8e-67 258.8 170 71.2
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 2.8e-67 258.8 170 70.6
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.8e-67 258.1 170 72.9
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 8.3e-67 257.3 188 65.4
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 3.1e-66 255.4 191 64.4
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 4.1e-66 255.0 170 69.4
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 5.4e-66 254.6 170 68.8
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 9.1e-66 253.8 170 71.2
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 1.2e-65 253.4 170 68.8
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 1.2e-65 253.4 170 67.6
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 5.9e-65 251.1 225 57.8
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 9.5e-63 243.8 169 66.9
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 4.7e-62 241.5 143 77.6
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 6.1e-62 241.1 167 70.7
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 5.2e-61 238.0 170 64.7
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 2.8e-59 232.3 163 68.7
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 2.7e-57 225.7 169 62.1
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 3.8e-56 221.9 127 82.7
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 1.5e-55 219.9 135 78.5
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.9e-55 219.5 169 66.9
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.2e-54 216.9 169 65.1
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 1.4e-53 213.4 161 58.4
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 1.5e-52 209.9 131 74.0
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 1.2e-49 200.3 168 53.6
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 9.5e-47 190.7 169 51.5
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 1.6e-46 189.9 169 52.1
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 8.9e-45 184.1 171 49.1
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 1.7e-43 179.9 160 51.9
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 6.4e-43 177.9 111 79.3
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 8.3e-43 177.6 117 66.7
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 8.3e-43 177.6 121 65.3
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.6e-41 173.3 130 62.3
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 2.0e-41 172.9 169 57.4
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 1.1e-37 160.6 87 81.6
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 1.3e-35 153.7 143 52.4
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 2.4e-34 149.4 107 64.5
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 2.1e-33 146.4 106 67.0
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 1.0e-32 144.1 87 69.0
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 1.7e-32 143.3 92 66.3
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 3.0e-32 142.5 87 67.8
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 7.3e-31 137.9 77 90.9
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 9.5e-31 137.5 83 81.9
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 1.6e-30 136.7 86 65.1
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 7.6e-28 127.9 77 84.4
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 2.9e-27 125.9 77 84.4
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 4.9e-27 125.2 94 72.3
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 7.1e-26 121.3 77 80.5
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 9.2e-26 120.9 77 77.9
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 9.2e-26 120.9 77 77.9
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.6e-25 120.2 87 55.2
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.6e-25 120.2 87 55.2
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 3.9e-24 115.5 77 75.3
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.1e-23 114.0 77 74.0
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 1.2e-22 110.5 69 81.2
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 8.1e-22 107.8 61 77.0
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 1.8e-21 106.7 65 73.8
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 3.1e-21 105.9 72 73.6
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 8.9e-21 104.4 75 72.0
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.5e-20 103.6 81 64.2
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 1.5e-20 103.6 108 40.7
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 1.1e-18 97.4 145 42.8
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 5.4e-18 95.1 49 83.7
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 6.0e-17 91.7 65 67.7
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 6.2e-14 81.6 119 37.8
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 6.2e-14 81.6 153 29.4
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 1.5e-12 77.0 46 80.4
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 3.4e-12 75.9 56 58.9
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 2.2e-11 73.2 56 57.1
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 9.3e-10 67.8 55 60.0
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 2.7e-09 66.2 49 57.1
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 7.9e-09 64.7 51 60.8
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 3.0e-08 62.8 72 40.3
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 1.1e-07 60.8 44 70.5
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 2.1e-06 56.6 44 50.0
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 8.1e-06 54.7 27 74.1


User provided reference genes

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