Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 2.0e-201 705.7 392 100.0
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 8.6e-144 514.2 425 69.6
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 9.6e-143 510.8 419 69.5
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 3.2e-138 495.7 418 69.1
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 9.0e-133 477.6 409 67.2
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 9.0e-133 477.6 423 67.1
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 4.5e-132 475.3 430 66.0
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 9.3e-130 467.6 440 63.2
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 4.6e-129 465.3 430 64.7
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 1.0e-128 464.2 449 63.0
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 3.0e-128 462.6 429 63.6
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 7.4e-127 458.0 428 65.2
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 1.1e-125 454.1 430 63.7
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 1.5e-124 450.3 410 65.1
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 4.5e-124 448.7 426 64.1
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 4.2e-122 442.2 429 62.7
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 4.6e-121 438.7 416 62.7
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 6.0e-121 438.3 415 63.1
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 6.0e-121 438.3 429 62.0
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 6.7e-120 434.9 434 61.5
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 6.7e-120 434.9 429 61.3
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 2.5e-119 433.0 369 68.6
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 1.3e-118 430.6 425 61.9
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 1.6e-118 430.3 427 62.3
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.6e-118 430.3 498 56.0
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 6.2e-118 428.3 431 61.0
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 1.4e-117 427.2 434 60.4
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 2.4e-117 426.4 431 60.8
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.4e-117 426.4 431 61.3
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 4.0e-117 425.6 356 69.7
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 4.0e-117 425.6 431 61.3
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 2.6e-116 422.9 431 60.3
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 7.6e-116 421.4 422 60.7
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.3e-115 420.6 424 60.8
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.7e-115 420.2 431 60.6
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 2.2e-115 419.9 425 60.0
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 1.4e-114 417.2 425 61.6
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 4.2e-114 415.6 419 60.4
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 2.1e-113 413.3 428 60.3
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 2.7e-113 412.9 419 60.4
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 2.7e-113 412.9 429 59.2
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 3.5e-113 412.5 413 62.2
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 3.9e-112 409.1 456 55.9
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 4.3e-111 405.6 422 60.4
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 7.4e-111 404.8 445 57.5
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 9.6e-111 404.4 435 60.7
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 1.3e-110 404.1 366 65.6
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 2.1e-110 403.3 475 55.4
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 4.8e-110 402.1 425 59.5
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 1.4e-109 400.6 424 57.8
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 1.8e-109 400.2 365 67.4
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 5.3e-109 398.7 365 67.1
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 6.9e-109 398.3 418 60.0
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 9.0e-109 397.9 420 58.8
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.5e-108 397.1 429 61.3
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 2.6e-108 396.4 421 58.4
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 2.6e-108 396.4 416 59.1
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 3.4e-108 396.0 413 58.6
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 3.4e-108 396.0 414 60.4
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 3.4e-108 396.0 366 64.5
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 4.5e-108 395.6 424 58.7
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 5.0e-107 392.1 422 58.5
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 1.4e-106 390.6 371 63.1
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 2.5e-106 389.8 360 64.7
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 5.5e-106 388.7 426 60.1
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 1.0e-104 384.4 427 57.1
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 1.3e-104 384.0 366 65.0
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 2.3e-104 383.3 414 58.9
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.3e-104 383.3 431 57.3
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 3.0e-104 382.9 367 63.2
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.5e-103 380.6 389 61.2
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 3.3e-103 379.4 428 58.2
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.6e-102 377.1 279 74.9
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 4.8e-102 375.6 387 58.9
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.8e-101 373.6 362 62.7
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.4e-101 373.2 422 57.1
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 5.3e-101 372.1 363 60.6
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 5.3e-101 372.1 422 56.9
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 2.0e-100 370.2 426 57.5
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 5.9e-100 368.6 412 55.8
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 7.7e-100 368.2 372 61.8
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 1.0e-99 367.9 412 55.8
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.2e-99 366.7 411 56.0
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 1.1e-98 364.4 315 67.0
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 1.0e-96 357.8 421 55.3
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.8e-96 357.1 352 60.5
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 3.0e-96 356.3 425 55.5
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 1.1e-95 354.4 423 55.1
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 5.7e-95 352.1 295 68.1
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 1.3e-94 350.9 364 58.2
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 2.8e-94 349.7 408 56.4
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 1.4e-93 347.4 410 54.9
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 7.7e-92 341.7 453 50.8
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 8.5e-91 338.2 409 54.0
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 1.4e-90 337.4 409 53.5
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 7.2e-90 335.1 409 54.0
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 4.7e-89 332.4 437 53.5
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 4.7e-89 332.4 366 54.4
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 1.0e-88 331.3 379 55.7
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 1.0e-88 331.3 379 55.7
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 3.3e-87 326.2 427 52.5
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.1e-85 321.2 268 69.8
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 6.5e-83 312.0 404 51.0
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 2.5e-82 310.1 392 52.0
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 7.2e-82 308.5 412 50.5
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 1.3e-78 297.7 412 49.0
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 2.2e-78 297.0 373 52.0
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 2.4e-77 293.5 416 49.3
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 3.1e-77 293.1 399 49.9
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 6.5e-75 285.4 455 45.5
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 4.4e-71 272.7 271 60.9
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 8.3e-70 268.5 412 46.4
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 3.8e-67 259.6 318 51.9
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 5.0e-67 259.2 298 55.7
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 2.3e-64 250.4 260 59.2
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 7.0e-61 238.8 232 60.8
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 2.1e-57 227.3 195 66.2
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 2.8e-57 226.9 257 57.6
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 4.0e-56 223.0 410 42.0
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 5.2e-56 222.6 275 53.8
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 8.9e-56 221.9 273 50.5
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 2.9e-54 216.9 201 66.2
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 1.9e-50 204.1 437 38.7
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 3.4e-47 193.4 261 51.3
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 3.7e-46 189.9 160 66.9
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 4.9e-46 189.5 135 72.6
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 8.3e-46 188.7 261 49.8
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 8.3e-46 188.7 136 72.1
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 1.1e-45 188.3 258 50.0
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 3.2e-45 186.8 259 49.4
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 7.0e-45 185.7 324 45.1
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 1.2e-41 174.9 253 46.6
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 3.6e-41 173.3 161 65.2
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 2.0e-39 167.5 382 37.7
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 4.4e-39 166.4 384 38.3
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 3.7e-38 163.3 130 70.8
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 1.5e-34 151.4 154 55.2
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 2.5e-34 150.6 258 43.8
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 6.2e-33 146.0 182 52.7
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 1.8e-32 144.4 193 47.2
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 8.9e-32 142.1 393 36.4
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 1.1e-29 135.2 197 47.7
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 2.1e-28 131.0 153 49.7
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 2.7e-20 104.0 125 53.6
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 9.9e-15 85.5 186 41.4
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 3.1e-08 63.9 120 39.2
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 4.5e-07 60.1 65 60.0
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 1.7e-06 58.2 55 50.9
BolC8t52058H Brassica oleracea HOM05D005050 ORTHO05D006198 8.4e-06 55.8 47 66.0


User provided reference genes

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