Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 1.3e-168 596.3 305 100.0
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 6.3e-166 587.4 303 99.0
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 4.0e-64 249.2 310 50.3
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.6e-57 227.3 315 45.4
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 7.9e-52 208.4 299 46.2
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 3.7e-49 199.5 313 45.0
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 1.2e-47 194.5 275 45.5
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 5.0e-46 189.1 332 40.1
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 8.5e-46 188.3 309 44.3
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 3.2e-45 186.4 313 42.8
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 3.0e-43 179.9 302 42.4
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 5.1e-43 179.1 298 39.3
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 1.1e-42 177.9 300 41.3
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.7e-41 174.1 292 38.0
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 1.7e-41 174.1 312 41.0
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 4.8e-41 172.6 299 39.5
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 1.1e-40 171.4 292 38.4
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 3.1e-40 169.9 312 40.1
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 5.3e-40 169.1 326 36.2
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 9.1e-40 168.3 300 40.7
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 9.1e-40 168.3 334 36.2
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 9.1e-40 168.3 309 41.1
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 3.4e-39 166.4 309 40.1
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.7e-38 164.1 311 39.2
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 6.5e-38 162.2 289 37.7
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 8.5e-38 161.8 311 38.9
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.4e-37 161.0 296 38.2
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 1.9e-37 160.6 309 38.8
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 4.2e-37 159.5 326 34.4
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 1.2e-36 157.9 324 34.3
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 1.6e-36 157.5 315 39.0
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 2.1e-36 157.1 289 39.4
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 7.9e-36 155.2 326 33.4
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 1.0e-35 154.8 315 37.5
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 1.8e-35 154.1 289 41.2
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 4.4e-34 149.4 254 43.7
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 7.4e-34 148.7 297 39.7
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 9.7e-34 148.3 286 38.8
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 1.3e-33 147.9 286 38.8
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 2.2e-33 147.1 312 36.2
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 3.7e-33 146.4 302 37.7
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 6.3e-33 145.6 307 38.1
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 8.2e-33 145.2 320 38.8
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 1.4e-32 144.4 302 35.4
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.8e-32 144.1 301 39.2
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.4e-32 143.7 301 39.5
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 2.4e-32 143.7 297 38.0
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 3.1e-32 143.3 299 37.5
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 6.9e-32 142.1 297 39.7
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 6.9e-32 142.1 304 39.8
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 6.9e-32 142.1 304 39.8
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 4.5e-31 139.4 312 35.6
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 4.5e-31 139.4 309 34.6
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 2.2e-30 137.1 305 37.7
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.7e-28 130.2 303 36.3
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 6.1e-28 129.0 326 32.2
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 6.7e-27 125.6 293 35.8
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 4.8e-25 119.4 294 31.0
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 6.3e-25 119.0 295 33.9
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.4e-24 117.9 320 34.4
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 1.2e-23 114.8 351 32.2
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 2.0e-23 114.0 315 34.0
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 2.6e-23 113.6 303 36.0
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 1.0e-22 111.7 355 31.5
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 1.7e-22 110.9 323 31.6
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 6.5e-22 109.0 356 31.5
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 3.2e-21 106.7 339 31.0
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 5.5e-21 105.9 311 33.1
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 7.2e-21 105.5 303 34.7
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 1.6e-20 104.4 332 30.4
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 4.7e-20 102.8 258 33.7
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 1.0e-19 101.7 324 30.6
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.0e-19 101.7 390 29.7
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 3.0e-19 100.1 141 44.7
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 4.0e-19 99.8 296 31.1
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 5.2e-19 99.4 362 29.3
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 6.7e-19 99.0 338 29.9
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 2.0e-18 97.4 323 27.9
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 2.6e-18 97.1 311 32.5
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 4.4e-18 96.3 330 29.7
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 9.7e-18 95.1 305 31.1
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 8.2e-17 92.0 338 29.9
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.2e-15 88.2 343 28.0
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 5.5e-13 79.3 348 26.1
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 1.6e-12 77.8 235 29.8
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 5.2e-11 72.8 227 30.4
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 6.8e-11 72.4 395 26.3
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 2.0e-10 70.9 242 33.9
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 3.4e-10 70.1 95 43.2
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 4.4e-10 69.7 125 35.2
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.3e-09 68.2 61 57.4
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 1.7e-09 67.8 99 41.4
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 6.3e-09 65.9 110 37.3
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 8.6e-06 55.5 141 33.3
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 8.6e-06 55.5 137 34.3


User provided reference genes

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