Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A299T33 Lonicera japonica HOM05D005763 ORTHO05D005970 8.0e-91 337.0 166 100.0
vmacro01712 Vaccinium macrocarpon HOM05D005763 ORTHO05D005970 2.7e-14 82.8 89 56.2
Rhsim11G0122700 Rhododendron simsii HOM05D005763 ORTHO05D005970 3.6e-14 82.4 88 55.7
Dinv19414 Davidia involucrata HOM05D005763 ORTHO05D005970 4.6e-14 82.0 75 62.7
Hma1.2p1_0633F.1_g192600 Hydrangea macrophylla HOM05D005763 ORTHO05D005970 7.9e-14 81.3 88 58.0
GSVIVG01023250001 Vitis vinifera HOM05D005763 ORTHO05D005970 4.3e-12 75.5 87 52.9
Cc02_g23160 Coffea canephora HOM05D005763 ORTHO05D005970 7.4e-12 74.7 88 50.0
Lsat_1_v5_gn_7_76141 Lactuca sativa HOM05D005763 ORTHO05D005970 9.7e-12 74.3 87 54.0
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 1.7e-11 73.6 55 70.9
Nitab4.5_0004106g0020 Nicotiana tabacum HOM05D005763 ORTHO05D005970 1.1e-10 70.9 83 51.8
MSTRG.16490 Avicennia marina HOM05D005763 ORTHO05D005970 1.8e-10 70.1 67 56.7
Nn7g37262 Nelumbo nucifera HOM05D005763 ORTHO05D005970 1.8e-10 70.1 39 84.6
Ciclev10000672m.g Citrus clementina HOM05D005763 ORTHO05D005970 2.4e-10 69.7 86 55.8
Cfa004488 Carpinus fangiana HOM05D005763 ORTHO05D005970 3.1e-10 69.3 85 49.4
Haze_10045 Corylus avellana HOM05D005763 ORTHO05D005970 3.1e-10 69.3 84 50.0
QL02p100429 Quercus lobata HOM05D005763 ORTHO05D005970 4.1e-10 68.9 89 47.2
Actinidia39003 Actinidia chinensis HOM05D005763 ORTHO05D005970 6.9e-10 68.2 60 63.3
Migut.B00776 Erythranthe guttata HOM05D005763 ORTHO05D005970 9.1e-10 67.8 56 60.7
TWI14G0927 Tripterygium wilfordii HOM05D005763 ORTHO05D005970 9.1e-10 67.8 62 58.1
Aqoxy5G02633 Aquilegia oxysepala HOM05D005763 ORTHO05D005970 1.2e-09 67.4 75 50.7
CSS0027988 Camellia sinensis var. sinensis HOM05D005763 ORTHO05D005970 1.2e-09 67.4 88 51.1
SGA_v2.0_scaffold304G47918 Striga asiatica HOM05D005763 ORTHO05D005970 1.2e-09 67.4 67 56.7
CAN.G855.2 Capsicum annuum HOM05D005763 ORTHO05D005970 1.5e-09 67.0 47 70.2
unitig_26.g9070 Utricularia gibba HOM05D005763 ORTHO05D005970 1.5e-09 67.0 55 58.2
Eucgr.I02762 Eucalyptus grandis HOM05D005763 ORTHO05D005970 2.6e-09 66.2 56 64.3
RcHm_v2.0_Chr7g0220691 Rosa chinensis HOM05D005763 ORTHO05D005970 2.6e-09 66.2 87 48.3
EL10Ac6g14141 Beta vulgaris HOM05D005763 ORTHO05D005970 3.4e-09 65.9 44 72.7
PGR142G3615 Punica granatum HOM05D005763 ORTHO05D005970 3.4e-09 65.9 73 50.7
FAN08G3368 Fragaria x ananassa HOM05D005763 ORTHO05D005970 4.5e-09 65.5 80 47.5
MBI06_g44454_MAGBIO Magnolia biondii HOM05D005763 ORTHO05D005970 4.5e-09 65.5 50 64.0
MD15G1435300 Malus domestica HOM05D005763 ORTHO05D005970 4.5e-09 65.5 62 51.6
Oeu000133.1 Olea europaea HOM05D005763 ORTHO05D005970 4.5e-09 65.5 56 58.9
FAN04G2209 Fragaria x ananassa HOM05D005763 ORTHO05D005970 7.7e-09 64.7 80 47.5
arahy.Tifrunner.gnm1.ann1.67VJX2 Arachis hypogaea HOM05D005763 ORTHO05D005970 1.0e-08 64.3 60 60.0
arahy.Tifrunner.gnm1.ann1.JZ48ZW Arachis hypogaea HOM05D005763 ORTHO05D005970 1.0e-08 64.3 60 60.0
Solyc01g103570.3 Solanum lycopersicum HOM05D005763 ORTHO05D005970 1.0e-08 64.3 82 50.0
Sopen01g045920 Solanum pennellii HOM05D005763 ORTHO05D005970 1.0e-08 64.3 82 50.0
Atru.chr6.496 Acer truncatum HOM05D005763 ORTHO05D005970 1.3e-08 63.9 54 64.8
CiPaw.05G004900 Carya illinoinensis HOM05D005763 ORTHO05D005970 1.3e-08 63.9 86 48.8
FvH4_5g28621 Fragaria vesca HOM05D005763 ORTHO05D005970 1.3e-08 63.9 80 47.5
FAN18G2102 Fragaria x ananassa HOM05D005763 ORTHO05D005970 1.3e-08 63.9 80 47.5
Sed0010757 Sechium edule HOM05D005763 ORTHO05D005970 1.3e-08 63.9 36 86.1
TPR.G2121 Trifolium pratense HOM05D005763 ORTHO05D005970 1.3e-08 63.9 56 58.9
TAR628G0443 Trochodendron aralioides HOM05D005763 ORTHO05D005970 1.3e-08 63.9 67 50.7
MELO3C011821.2 Cucumis melo HOM05D005763 ORTHO05D005970 1.7e-08 63.5 36 83.3
ECA236G4930 Erigeron canadensis HOM05D005763 ORTHO05D005970 1.7e-08 63.5 53 64.2
Prupe.1G578900 Prunus persica HOM05D005763 ORTHO05D005970 1.7e-08 63.5 44 68.2
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 2.2e-08 63.2 52 61.5
Glyma.16G003000 Glycine max HOM05D005763 ORTHO05D005970 2.2e-08 63.2 65 55.4
Lalb_Chr15g0090741 Lupinus albus HOM05D005763 ORTHO05D005970 2.2e-08 63.2 49 67.3
Manes.10G118700 Manihot esculenta HOM05D005763 ORTHO05D005970 2.2e-08 63.2 63 57.1
Nitab4.5_0000787g0220 Nicotiana tabacum HOM05D005763 ORTHO05D005970 2.2e-08 63.2 117 40.2
PGSC0003DMG400024917 Solanum tuberosum HOM05D005763 ORTHO05D005970 2.2e-08 63.2 82 47.6
Cpa.g.sc113.46 Carica papaya HOM05D005763 ORTHO05D005970 2.9e-08 62.8 67 53.7
Sc07g0005120 Simmondsia chinensis HOM05D005763 ORTHO05D005970 2.9e-08 62.8 68 52.9
Psat1g222400 Pisum sativum HOM05D005763 ORTHO05D005970 3.8e-08 62.4 39 71.8
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 5.0e-08 62.0 52 59.6
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 6.5e-08 61.6 83 49.4
arahy.Tifrunner.gnm1.ann1.V25XF9 Arachis hypogaea HOM05D005763 ORTHO05D005970 6.5e-08 61.6 50 66.0
Hund15460 Selenicereus undatus HOM05D005763 ORTHO05D005970 6.5e-08 61.6 94 46.8
AUR62040623 Chenopodium quinoa HOM05D005763 ORTHO05D005970 8.5e-08 61.2 67 55.2
CsaV3_5G029800 Cucumis sativus L. HOM05D005763 ORTHO05D005970 8.5e-08 61.2 65 60.0
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 8.5e-08 61.2 87 42.5
Phvul.006G219000 Phaseolus vulgaris HOM05D005763 ORTHO05D005970 8.5e-08 61.2 52 63.5
ClCG11G013280 Citrullus lanatus HOM05D005763 ORTHO05D005970 1.1e-07 60.8 62 54.8
Gohir.D01G174700 Gossypium hirsutum HOM05D005763 ORTHO05D005970 1.1e-07 60.8 87 48.3
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 1.1e-07 60.8 87 42.5
Medtr2g005820 Medicago truncatula HOM05D005763 ORTHO05D005970 1.1e-07 60.8 56 55.4
Os06g0355500 Oryza sativa ssp. japonica HOM05D005763 ORTHO05D005970 1.1e-07 60.8 84 45.2
Os08g0109500 Oryza sativa ssp. japonica HOM05D005763 ORTHO05D005970 1.1e-07 60.8 84 45.2
VMungo0540G0189 Vigna mungo HOM05D005763 ORTHO05D005970 1.1e-07 60.8 57 52.6
CARHR054180 Cardamine hirsuta HOM05D005763 ORTHO05D005970 1.4e-07 60.5 36 83.3
AUR62028255 Chenopodium quinoa HOM05D005763 ORTHO05D005970 1.4e-07 60.5 67 55.2
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 1.4e-07 60.5 89 43.8
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 1.4e-07 60.5 89 43.8
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 1.4e-07 60.5 89 43.8
Lj6g0006999 Lotus japonicus HOM05D005763 ORTHO05D005970 1.4e-07 60.5 82 46.3
BcaB04g20185 Brassica carinata HOM05D005763 ORTHO05D005970 1.9e-07 60.1 39 71.8
Gohir.A01G183700 Gossypium hirsutum HOM05D005763 ORTHO05D005970 1.9e-07 60.1 87 48.3
AL2G18660 Arabidopsis lyrata HOM05D005763 ORTHO05D005970 2.5e-07 59.7 38 76.3
Duzib132G0801 Durio zibethinus HOM05D005763 ORTHO05D005970 2.5e-07 59.7 64 54.7
Lj5A265G37 Lonicera japonica HOM05D005763 ORTHO05D005970 2.5e-07 59.7 35 82.9
Sabra01G0155000 Salix brachista HOM05D005763 ORTHO05D005970 2.5e-07 59.7 38 76.3
Thecc.02G018700 Theobroma cacao HOM05D005763 ORTHO05D005970 2.5e-07 59.7 64 56.2
Gorai.002G216800 Gossypium raimondii HOM05D005763 ORTHO05D005970 3.2e-07 59.3 87 47.1
CDE08G1622 Ceratophyllum demersum HOM05D005763 ORTHO05D005970 4.2e-07 58.9 103 43.7
COL.COLO4_17725 Corchorus olitorius HOM05D005763 ORTHO05D005970 4.2e-07 58.9 74 50.0
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 4.2e-07 58.9 81 50.6
Sp2g05580 Schrenkiella parvula HOM05D005763 ORTHO05D005970 4.2e-07 58.9 36 80.6
ECA247G3253 Erigeron canadensis HOM05D005763 ORTHO05D005970 5.5e-07 58.5 102 41.2
Glyma.12G166900 Glycine max HOM05D005763 ORTHO05D005970 5.5e-07 58.5 69 47.8
Hma1.2p1_0633F.1_g192590 Hydrangea macrophylla HOM05D005763 ORTHO05D005970 5.5e-07 58.5 56 55.4
Thhalv10023369m.g Eutrema salsugineum HOM05D005763 ORTHO05D005970 7.2e-07 58.2 53 62.3
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 7.2e-07 58.2 72 51.4
SEGI_38432 Sequoiadendron giganteum HOM05D005763 ORTHO05D005970 7.2e-07 58.2 68 51.5
BcaC09g49515 Brassica carinata HOM05D005763 ORTHO05D005970 9.4e-07 57.8 49 63.3
A01p28160 Brassica napus HOM05D005763 ORTHO05D005970 9.4e-07 57.8 43 65.1
C01p35700 Brassica napus HOM05D005763 ORTHO05D005970 9.4e-07 57.8 49 63.3
BolC1t03529H Brassica oleracea HOM05D005763 ORTHO05D005970 9.4e-07 57.8 49 63.3
BraA01t02945Z Brassica rapa HOM05D005763 ORTHO05D005970 9.4e-07 57.8 43 65.1
Lsat_1_v5_gn_9_120341 Lactuca sativa HOM05D000539 ORTHO05D000233 9.4e-07 57.8 74 45.9
Zm00001eb174170 Zea mays HOM05D005763 ORTHO05D005970 1.2e-06 57.4 89 40.4
Cpa.g.sc113.47 Carica papaya HOM05D005763 ORTHO05D005970 1.6e-06 57.0 69 47.8
Gohir.A01G183600 Gossypium hirsutum HOM05D001309 ORTHO05D005970 1.6e-06 57.0 87 41.4
SEGI_32531 Sequoiadendron giganteum HOM05D005763 ORTHO05D005970 1.6e-06 57.0 39 71.8
HPP92_011333 Vanilla planifolia HOM05D005763 ORTHO05D005970 2.1e-06 56.6 55 58.2
Potri.004G223700 Populus trichocarpa HOM05D005763 ORTHO05D005970 2.7e-06 56.2 53 54.7
ATR1136G018 Amborella trichopoda HOM05D005763 ORTHO05D005970 3.6e-06 55.8 64 48.4
Lsat_1_v5_gn_9_120321 Lactuca sativa HOM05D005763 ORTHO05D005970 3.6e-06 55.8 74 43.2
MD15G1435000 Malus domestica HOM05D005763 ORTHO05D005970 3.6e-06 55.8 39 64.1
Thecc.02G018900 Theobroma cacao HOM05D005763 ORTHO05D005970 3.6e-06 55.8 89 39.3
PSO170G4663 Papaver somniferum HOM05D005763 ORTHO05D005970 7.9e-06 54.7 37 70.3


User provided reference genes

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