Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 9.5e-212 740.0 383 100.0
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 9.5e-212 740.0 383 100.0
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 1.4e-167 593.2 388 79.9
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 2.8e-163 578.9 388 78.1
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 3.1e-162 575.5 388 76.5
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 3.8e-160 568.5 388 75.5
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 8.4e-160 567.4 388 75.8
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 1.1e-159 567.0 388 74.7
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 1.1e-159 567.0 388 75.5
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 1.1e-159 567.0 388 76.8
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 9.3e-159 563.9 385 74.5
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 9.3e-159 563.9 383 76.8
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 1.2e-158 563.5 387 74.9
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 4.6e-158 561.6 385 74.3
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 6.0e-158 561.2 387 75.7
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.3e-157 559.3 388 76.0
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 6.7e-157 557.8 388 74.5
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 8.7e-157 557.4 383 76.0
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 1.1e-156 557.0 387 74.7
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.5e-156 556.6 383 75.5
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 1.9e-156 556.2 380 74.7
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.5e-156 555.8 388 74.0
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 3.3e-156 555.4 388 74.2
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 1.3e-155 553.5 386 74.1
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 1.6e-155 553.1 388 74.5
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.1e-155 552.7 389 74.6
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 4.8e-155 551.6 383 74.9
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 6.2e-155 551.2 386 74.6
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 6.2e-155 551.2 388 74.0
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 6.2e-155 551.2 388 74.5
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.1e-154 550.4 388 75.5
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 2.4e-154 549.3 388 72.7
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 4.0e-154 548.5 388 73.2
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 4.0e-154 548.5 388 73.5
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 4.5e-153 545.0 390 73.1
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 1.3e-152 543.5 388 72.9
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 1.3e-152 543.5 348 80.2
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 1.3e-152 543.5 388 74.0
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 6.5e-152 541.2 381 72.7
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.1e-151 540.4 388 72.9
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 2.1e-150 536.2 388 72.2
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 2.1e-150 536.2 387 73.4
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 2.3e-149 532.7 384 70.6
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 3.9e-149 531.9 388 70.4
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 5.1e-149 531.6 389 71.5
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 5.1e-149 531.6 388 71.1
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 6.7e-149 531.2 386 72.3
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 7.4e-148 527.7 388 70.6
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 7.4e-148 527.7 389 71.2
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 7.4e-148 527.7 406 70.0
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 2.1e-147 526.2 388 70.9
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 2.8e-147 525.8 385 70.1
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 3.7e-147 525.4 385 70.4
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.8e-147 525.0 385 70.6
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 4.8e-147 525.0 387 70.8
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 6.2e-147 524.6 388 70.1
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 2.4e-146 522.7 386 69.9
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.1e-146 522.3 385 70.4
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.2e-145 520.4 387 71.1
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 7.6e-145 517.7 389 69.2
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 1.7e-144 516.5 383 69.2
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 1.7e-144 516.5 393 69.7
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 6.5e-144 514.6 389 70.7
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 8.4e-144 514.2 392 69.9
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 7.2e-143 511.1 397 67.0
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 7.2e-143 511.1 417 65.9
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.2e-142 510.4 385 68.6
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.6e-142 510.0 417 65.5
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 2.1e-142 509.6 388 69.1
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.1e-141 505.0 417 65.0
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 8.7e-141 504.2 382 68.8
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 8.7e-141 504.2 352 73.9
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.1e-140 503.8 417 65.2
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 1.1e-140 503.8 389 68.6
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.5e-140 503.4 386 68.1
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 1.9e-140 503.1 389 68.6
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 5.7e-140 501.5 385 68.1
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 1.6e-139 500.0 388 68.0
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 2.2e-139 499.6 388 68.8
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.8e-138 496.5 388 67.5
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 1.9e-135 486.5 347 70.6
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.2e-135 485.7 352 72.2
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 5.5e-135 485.0 390 67.2
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 1.6e-134 483.4 386 64.0
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 6.7e-133 478.0 351 70.4
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 2.0e-132 476.5 381 65.6
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 2.0e-132 476.5 387 65.4
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 3.3e-132 475.7 414 63.0
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 5.7e-132 474.9 386 64.0
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 9.7e-132 474.2 384 63.5
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 1.7e-131 473.4 388 64.7
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 1.7e-131 473.4 386 65.3
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 2.2e-131 473.0 384 64.6
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.8e-131 472.6 386 63.5
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 3.7e-131 472.2 388 64.2
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 4.8e-131 471.9 387 64.3
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 8.2e-131 471.1 387 64.6
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 2.4e-130 469.5 387 64.6
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 2.4e-130 469.5 387 64.6
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 4.1e-130 468.8 385 64.4
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 9.1e-130 467.6 387 64.3
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 1.2e-129 467.2 386 63.0
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 2.0e-129 466.5 382 64.1
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 2.0e-129 466.5 386 63.7
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 3.4e-129 465.7 382 64.1
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 4.5e-129 465.3 386 63.7
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 4.5e-129 465.3 385 64.2
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 5.9e-129 464.9 386 64.0
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 7.9e-126 454.5 383 62.7
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 1.1e-124 450.7 337 68.2
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 2.6e-124 449.5 398 60.8
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 3.8e-120 435.6 388 59.8
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 1.6e-118 430.3 394 59.1
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 3.0e-117 426.0 392 58.7
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 3.3e-116 422.5 386 60.1
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.7e-115 420.2 390 60.3
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.2e-115 419.9 388 60.8
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 6.3e-115 418.3 397 57.2
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 5.3e-114 415.2 377 59.4
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 2.1e-110 403.3 397 57.9
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 4.0e-109 399.1 383 58.0
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 4.7e-102 375.6 383 56.9
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 7.5e-100 368.2 300 62.3
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 1.8e-90 337.0 410 48.3
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.4e-90 336.7 271 65.3
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.2e-86 324.3 227 72.2
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 5.8e-84 315.5 436 43.3
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 3.2e-82 309.7 368 47.3
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 9.5e-79 298.1 297 57.9
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 6.4e-75 285.4 265 56.6
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 6.8e-69 265.4 384 41.4
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 4.0e-61 239.6 466 35.4
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 2.1e-57 227.3 167 73.7
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 8.7e-56 221.9 143 79.0
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 2.4e-50 203.8 244 47.1
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.7e-48 197.6 149 73.8
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 5.5e-42 176.0 173 58.4
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 2.8e-38 163.7 128 68.8
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 4.0e-37 159.8 149 61.7
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 5.8e-36 156.0 155 60.0
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.8e-35 153.3 391 30.2
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 6.0e-33 146.0 138 63.0
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.9e-31 141.0 120 66.7
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 2.6e-28 130.6 92 69.6
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 2.2e-27 127.5 89 74.2
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 6.5e-27 125.9 177 42.4
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 7.2e-26 122.5 97 67.0
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 3.6e-25 120.2 125 60.8
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 7.9e-25 119.0 108 56.5
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.3e-24 118.2 125 59.2
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 5.1e-24 116.3 79 73.4
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 6.7e-24 115.9 213 36.6
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 2.6e-20 104.0 123 55.3
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 5.5e-18 96.3 75 64.0
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 1.7e-14 84.7 100 44.0
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 4.1e-13 80.1 106 45.3
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 5.9e-12 76.3 41 92.7
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 6.5e-11 72.8 52 63.5
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 4.2e-10 70.1 46 78.3
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 6.1e-09 66.2 36 88.9
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 6.1e-09 66.2 83 49.4
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.8e-08 64.7 98 46.9
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 3.0e-08 63.9 49 57.1
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 1.3e-06 58.5 38 78.9
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 4.8e-06 56.6 38 76.3


User provided reference genes

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