Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 1.3e-157 559.7 291 100.0
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 1.6e-126 456.4 268 91.0
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 1.6e-126 456.4 268 91.0
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 2.4e-122 442.6 268 86.6
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 5.3e-122 441.4 268 86.9
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 2.6e-121 439.1 268 88.1
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 5.8e-121 438.0 268 87.3
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 1.7e-120 436.4 269 87.0
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 6.5e-120 434.5 267 86.1
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 1.1e-119 433.7 268 86.9
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 2.5e-119 432.6 267 84.6
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 3.2e-119 432.2 267 85.4
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 3.2e-119 432.2 268 86.9
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 1.6e-118 429.9 267 84.6
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 2.1e-118 429.5 267 85.8
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 4.6e-118 428.3 268 85.8
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 4.6e-118 428.3 267 85.8
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 7.9e-118 427.6 267 83.9
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 1.0e-117 427.2 267 85.8
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 1.3e-117 426.8 267 86.1
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 1.3e-117 426.8 268 85.1
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 2.3e-117 426.0 267 85.0
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 5.1e-117 424.9 267 85.4
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 6.7e-117 424.5 268 83.6
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 6.7e-117 424.5 269 85.1
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 6.7e-117 424.5 267 85.0
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 8.7e-117 424.1 268 84.7
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 1.9e-116 422.9 267 85.4
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 1.9e-116 422.9 268 82.8
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 2.5e-116 422.5 268 85.1
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 2.5e-116 422.5 267 84.3
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 3.3e-116 422.2 269 83.6
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 4.3e-116 421.8 267 84.6
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 5.7e-116 421.4 266 85.3
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 7.4e-116 421.0 267 83.5
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 7.4e-116 421.0 268 85.1
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 7.4e-116 421.0 268 82.5
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 4.8e-115 418.3 282 80.1
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 1.1e-114 417.2 267 82.8
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 1.4e-114 416.8 268 82.1
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 4.1e-114 415.2 269 81.4
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 4.1e-114 415.2 268 81.7
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 6.9e-114 414.5 268 83.6
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 6.9e-114 414.5 268 83.6
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 2.0e-113 412.9 268 83.2
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 2.6e-113 412.5 268 81.7
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 2.6e-113 412.5 267 82.0
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 1.7e-112 409.8 268 82.8
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 1.7e-112 409.8 267 82.0
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 1.7e-112 409.8 268 82.8
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 3.8e-112 408.7 268 80.2
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 1.1e-111 407.1 268 82.1
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 1.9e-111 406.4 268 82.5
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 4.2e-111 405.2 268 81.0
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 9.4e-111 404.1 268 81.0
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 7.9e-110 401.0 267 80.1
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 7.9e-110 401.0 268 79.5
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 7.9e-110 401.0 267 80.9
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 1.4e-109 400.2 268 80.2
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 3.9e-109 398.7 268 79.1
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 5.1e-109 398.3 268 79.1
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 5.1e-109 398.3 268 79.5
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 6.7e-109 397.9 268 79.1
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 2.0e-108 396.4 268 78.7
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 2.5e-108 396.0 268 78.7
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 2.5e-108 396.0 268 78.7
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 5.7e-108 394.8 280 75.0
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 5.7e-108 394.8 268 78.7
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 9.7e-108 394.0 268 78.4
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 1.7e-107 393.3 267 78.3
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 4.8e-107 391.7 270 79.3
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 6.3e-107 391.3 268 78.4
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 8.2e-107 391.0 268 78.4
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 1.8e-106 389.8 268 77.6
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 1.8e-106 389.8 267 78.3
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 4.1e-106 388.7 268 76.9
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 2.6e-105 386.0 256 83.2
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 3.4e-105 385.6 268 77.6
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 3.4e-105 385.6 268 76.5
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 3.4e-105 385.6 267 77.5
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 1.0e-104 384.0 268 76.1
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 1.3e-104 383.6 276 74.3
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 1.3e-104 383.6 268 80.2
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 6.5e-104 381.3 267 76.8
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 1.4e-103 380.2 284 73.6
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 1.4e-103 380.2 267 76.4
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 1.4e-103 380.2 267 76.4
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 1.2e-102 377.1 267 75.7
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 2.1e-102 376.3 271 74.5
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 4.7e-102 375.2 279 74.9
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 7.9e-102 374.4 267 76.0
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.8e-101 373.2 277 76.2
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 3.0e-101 372.5 268 75.4
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 3.0e-101 372.5 270 75.6
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 5.1e-101 371.7 268 74.6
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 3.3e-100 369.0 267 74.9
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 6.3e-99 364.8 280 73.9
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 1.4e-98 363.6 250 79.6
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 1.8e-98 363.2 267 73.8
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 3.1e-98 362.5 268 76.5
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 1.5e-97 360.1 224 88.8
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 2.0e-97 359.8 276 71.7
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 2.6e-97 359.4 267 73.0
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.6e-97 359.4 267 73.4
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 5.9e-97 358.2 276 70.7
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 7.7e-97 357.8 267 72.7
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 1.3e-96 357.1 267 74.2
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 1.7e-96 356.7 268 71.3
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 8.5e-96 354.4 268 72.4
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 3.2e-95 352.4 268 72.0
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 3.2e-95 352.4 268 72.0
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 3.2e-95 352.4 268 72.8
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 7.2e-95 351.3 274 70.1
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 7.2e-95 351.3 267 69.3
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 2.1e-94 349.7 268 72.0
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 2.3e-93 346.3 268 70.9
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 2.3e-93 346.3 268 70.9
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 5.2e-93 345.1 268 70.5
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 6.7e-93 344.7 280 68.9
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.7e-91 340.1 268 67.5
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 6.3e-91 338.2 268 66.4
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 1.1e-90 337.4 269 70.6
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 3.1e-90 335.9 267 65.9
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 7.7e-89 331.3 267 64.8
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 6.5e-88 328.2 269 68.8
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 4.7e-86 322.0 269 66.9
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.2e-85 318.5 268 63.1
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 7.5e-84 314.7 267 61.8
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 2.0e-81 306.6 294 61.9
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 2.9e-80 302.8 271 60.9
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 2.9e-80 302.8 266 60.9
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 1.9e-79 300.1 225 75.6
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 8.8e-77 291.2 217 74.2
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 9.5e-71 271.2 198 76.8
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 6.8e-69 265.0 196 74.0
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 3.4e-68 262.7 267 58.4
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 6.3e-67 258.5 271 55.0
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 8.0e-62 241.5 137 91.2
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 4.9e-51 205.7 126 87.3
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 8.6e-40 168.3 126 73.0
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 6.4e-35 152.1 93 79.6
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 3.8e-27 126.3 77 80.5
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 1.1e-26 124.8 68 86.8
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 1.2e-25 121.3 70 84.3
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.3e-24 117.1 98 56.1
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 6.6e-24 115.5 90 72.2
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 7.1e-18 95.5 137 47.4
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 1.3e-16 91.3 93 57.0
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 1.8e-13 80.9 39 97.4
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.1e-13 80.1 97 52.6
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 7.6e-12 75.5 42 88.1
PRCOL_00002192 Prasinoderma coloniale HOM05D004327 ORTHO05D005032 2.2e-11 73.9 269 27.5
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 3.2e-10 70.1 57 61.4
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 4.2e-10 69.7 39 84.6
MCO09G810 Micromonas commoda HOM05D004327 ORTHO05D005032 1.8e-08 64.3 170 29.4
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 1.3e-06 58.2 39 69.2
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.1e-06 57.4 37 67.6


User provided reference genes

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