Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A230G21 Lonicera japonica HOM05D001456 ORTHO05D002799 1.2e-88 329.7 155 100.0
Lju99A5G39 Lonicera japonica HOM05D001456 ORTHO05D002799 7.2e-86 320.5 151 100.0
Hma1.2p1_3304F.1_g335090 Hydrangea macrophylla HOM05D001456 ORTHO05D002799 5.4e-65 251.1 151 72.2
CSS0013085 Camellia sinensis var. sinensis HOM05D001456 ORTHO05D002799 6.6e-63 244.2 151 73.5
DCAR_025306 Daucus carota HOM05D001456 ORTHO05D002799 4.3e-62 241.5 151 72.8
Oeu036643.2 Olea europaea HOM05D001456 ORTHO05D002799 7.3e-62 240.7 153 66.7
Dinv24508 Davidia involucrata HOM05D001456 ORTHO05D002799 1.2e-61 240.0 151 71.5
Manes.09G180700 Manihot esculenta HOM05D001456 ORTHO05D002799 8.1e-61 237.3 149 70.5
CAN.G1248.22 Capsicum annuum HOM05D001456 ORTHO05D002799 3.1e-60 235.3 151 70.2
Solyc01g101140.4 Solanum lycopersicum HOM05D001456 ORTHO05D002799 4.0e-60 235.0 151 68.9
Sopen01g044590 Solanum pennellii HOM05D001456 ORTHO05D002799 4.0e-60 235.0 151 68.9
PGSC0003DMG400018288 Solanum tuberosum HOM05D001456 ORTHO05D002799 4.0e-60 235.0 151 68.9
Oeu000099.1 Olea europaea HOM05D001456 ORTHO05D002799 5.2e-60 234.6 155 65.8
Nitab4.5_0002485g0050 Nicotiana tabacum HOM05D001456 ORTHO05D002799 3.4e-59 231.9 151 69.5
Rhsim05G0122100 Rhododendron simsii HOM05D001456 ORTHO05D002799 2.2e-58 229.2 149 68.5
arahy.Tifrunner.gnm1.ann1.95CVAH Arachis hypogaea HOM05D001456 ORTHO05D002799 2.9e-58 228.8 151 66.2
arahy.Tifrunner.gnm1.ann1.XUXX3P Arachis hypogaea HOM05D001456 ORTHO05D002799 2.9e-58 228.8 151 66.2
Lalb_Chr04g0260301 Lupinus albus HOM05D001456 ORTHO05D002799 1.1e-57 226.9 150 64.7
Actinidia01663 Actinidia chinensis HOM05D001456 ORTHO05D002799 1.9e-57 226.1 151 68.2
Peaxi162Scf00357g00114 Petunia axillaris HOM05D001456 ORTHO05D002799 2.4e-57 225.7 151 68.2
TAR362G0556 Trochodendron aralioides HOM05D001456 ORTHO05D002799 3.2e-57 225.3 151 67.5
Eucgr.H01318 Eucalyptus grandis HOM05D001456 ORTHO05D002799 4.1e-57 224.9 157 62.4
Lalb_Chr06g0167321 Lupinus albus HOM05D001456 ORTHO05D002799 4.1e-57 224.9 151 65.6
Manes.08G107800 Manihot esculenta HOM05D001456 ORTHO05D002799 5.4e-57 224.6 152 65.8
Nitab4.5_0005904g0040 Nicotiana tabacum HOM05D001456 ORTHO05D002799 5.4e-57 224.6 143 69.9
MSTRG.16424 Avicennia marina HOM05D001456 ORTHO05D002799 7.1e-57 224.2 154 66.9
vmacro19766 Vaccinium macrocarpon HOM05D001456 ORTHO05D002799 9.2e-57 223.8 150 65.3
Cc02_g35790 Coffea canephora HOM05D001456 ORTHO05D002799 1.2e-56 223.4 151 64.2
GSVIVG01031320001 Vitis vinifera HOM05D001456 ORTHO05D002799 2.1e-56 222.6 151 66.2
HanXRQChr09g0270991 Helianthus annuus HOM05D001456 ORTHO05D002799 2.7e-56 222.2 152 65.8
SalBow4G0536 Salvia bowleyana HOM05D001456 ORTHO05D002799 6.0e-56 221.1 152 62.5
SalBow4G1768 Salvia bowleyana HOM05D001456 ORTHO05D002799 6.0e-56 221.1 152 62.5
Prupe.3G003800 Prunus persica HOM05D001456 ORTHO05D002799 7.8e-56 220.7 151 64.9
Lj1g0004173 Lotus japonicus HOM05D001456 ORTHO05D002799 1.0e-55 220.3 152 63.2
GSVIVG01028213001 Vitis vinifera HOM05D001456 ORTHO05D002799 1.0e-55 220.3 149 65.8
TPR.G1642 Trifolium pratense HOM05D001456 ORTHO05D002799 1.3e-55 219.9 150 64.7
Medtr7g111570 Medicago truncatula HOM05D001456 ORTHO05D002799 1.7e-55 219.5 151 64.2
VMungo1383G0246 Vigna mungo HOM05D001456 ORTHO05D002799 2.3e-55 219.2 151 64.9
Atru.chr5.890 Acer truncatum HOM05D001456 ORTHO05D002799 3.0e-55 218.8 150 65.3
Haze_05129 Corylus avellana HOM05D001456 ORTHO05D002799 5.1e-55 218.0 154 63.0
Glyma.19G225800 Glycine max HOM05D001456 ORTHO05D002799 5.1e-55 218.0 151 62.3
MSTRG.20358 Avicennia marina HOM05D001456 ORTHO05D002799 6.6e-55 217.6 152 62.5
Phvul.001G222300 Phaseolus vulgaris HOM05D001456 ORTHO05D002799 1.5e-54 216.5 151 63.6
TWI59G0324 Tripterygium wilfordii HOM05D001456 ORTHO05D002799 1.5e-54 216.5 149 64.4
Actinidia21350 Actinidia chinensis HOM05D001456 ORTHO05D002799 2.5e-54 215.7 151 62.9
Nn4g25391 Nelumbo nucifera HOM05D001456 ORTHO05D002799 2.5e-54 215.7 153 62.7
Duzib138G0531 Durio zibethinus HOM05D001456 ORTHO05D002799 3.3e-54 215.3 151 62.3
Glyma.03G228500 Glycine max HOM05D001456 ORTHO05D002799 4.3e-54 214.9 151 62.3
CANSAT25G0904 Cannabis sativa HOM05D001456 ORTHO05D002799 7.3e-54 214.2 149 61.7
Cfa004891 Carpinus fangiana HOM05D001456 ORTHO05D002799 7.3e-54 214.2 152 61.8
FvH4_1g26400 Fragaria vesca HOM05D001456 ORTHO05D002799 9.5e-54 213.8 149 61.7
FAN19G2030 Fragaria x ananassa HOM05D001456 ORTHO05D002799 9.5e-54 213.8 149 61.7
MD09G1292400 Malus domestica HOM05D001456 ORTHO05D002799 9.5e-54 213.8 150 62.0
MD17G1283700 Malus domestica HOM05D001456 ORTHO05D002799 9.5e-54 213.8 143 65.7
TAR636G1258 Trochodendron aralioides HOM05D001456 ORTHO05D002799 9.5e-54 213.8 153 62.7
TAR365G0439 Trochodendron aralioides HOM05D001456 ORTHO05D002799 1.2e-53 213.4 150 62.7
Duzib211G0259 Durio zibethinus HOM05D001456 ORTHO05D002799 1.6e-53 213.0 151 61.6
RcHm_v2.0_Chr3g0486181 Rosa chinensis HOM05D001456 ORTHO05D002799 1.6e-53 213.0 150 63.3
SGA_v2.0_scaffold5G02913 Striga asiatica HOM05D001456 ORTHO05D002799 2.1e-53 212.6 152 61.8
TWI23G1113 Tripterygium wilfordii HOM05D001456 ORTHO05D002799 2.8e-53 212.2 147 63.3
FAN28G1216 Fragaria x ananassa HOM05D001456 ORTHO05D002799 8.1e-53 210.7 149 61.1
Glyma.10G143900 Glycine max HOM05D001456 ORTHO05D002799 1.8e-52 209.5 150 59.3
PGR031G3055 Punica granatum HOM05D001456 ORTHO05D002799 2.4e-52 209.1 148 64.2
Ciclev10019276m.g Citrus clementina HOM05D001456 ORTHO05D002799 4.0e-52 208.4 151 61.6
Potri.005G003800 Populus trichocarpa HOM05D001456 ORTHO05D002799 5.2e-52 208.0 149 61.7
CiPaw.08G083900 Carya illinoinensis HOM05D001456 ORTHO05D002799 6.8e-52 207.6 146 63.7
Migut.N00970 Erythranthe guttata HOM05D001456 ORTHO05D002799 6.8e-52 207.6 151 61.6
Gorai.008G135500 Gossypium raimondii HOM05D001456 ORTHO05D002799 6.8e-52 207.6 154 58.4
TAR365G0880 Trochodendron aralioides HOM05D001456 ORTHO05D002799 8.9e-52 207.2 150 62.0
FAN26G2486 Fragaria x ananassa HOM05D001456 ORTHO05D002799 1.2e-51 206.8 148 60.1
Sabra05G0015100 Salix brachista HOM05D001456 ORTHO05D002799 1.2e-51 206.8 149 61.1
Sc05g0000120 Simmondsia chinensis HOM05D001456 ORTHO05D002799 1.2e-51 206.8 149 60.4
Gohir.A12G120700 Gossypium hirsutum HOM05D001456 ORTHO05D002799 1.5e-51 206.5 154 58.4
Sabra05G0001000 Salix brachista HOM05D001456 ORTHO05D002799 1.5e-51 206.5 149 60.4
COL.COLO4_23147 Corchorus olitorius HOM05D001456 ORTHO05D002799 2.0e-51 206.1 153 62.1
Gohir.A11G103800 Gossypium hirsutum HOM05D001456 ORTHO05D002799 2.0e-51 206.1 145 62.8
Gohir.D12G124500 Gossypium hirsutum HOM05D001456 ORTHO05D002799 2.0e-51 206.1 154 58.4
Dinv12091 Davidia involucrata HOM05D001456 ORTHO05D002799 5.8e-51 204.5 151 60.3
QL03p010491 Quercus lobata HOM05D001456 ORTHO05D002799 9.9e-51 203.8 146 61.0
MELO3C005198.2 Cucumis melo HOM05D001456 ORTHO05D002799 2.9e-50 202.2 150 62.7
ECA236G0747 Erigeron canadensis HOM05D001456 ORTHO05D002799 2.9e-50 202.2 151 62.3
Potri.013G003000 Populus trichocarpa HOM05D001456 ORTHO05D002799 6.4e-50 201.1 152 59.9
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 8.4e-50 200.7 150 60.7
Manes.01G233600 Manihot esculenta HOM05D001456 ORTHO05D002799 8.4e-50 200.7 145 62.1
ClCG01G007140 Citrullus lanatus HOM05D001456 ORTHO05D002799 1.1e-49 200.3 150 61.3
Eucgr.K00579 Eucalyptus grandis HOM05D001456 ORTHO05D002799 1.1e-49 200.3 149 59.1
Sabra13G0002500 Salix brachista HOM05D001456 ORTHO05D002799 1.1e-49 200.3 146 61.6
THA.LOC104802123 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 1.1e-49 200.3 154 56.5
Gohir.D11G108200 Gossypium hirsutum HOM05D001456 ORTHO05D002799 1.9e-49 199.5 145 60.7
Gorai.007G116200 Gossypium raimondii HOM05D001456 ORTHO05D002799 2.4e-49 199.1 145 60.7
AL5G44950 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 3.2e-49 198.7 144 56.9
Carub.0005s2893 Capsella rubella HOM05D001456 ORTHO05D002799 4.2e-49 198.4 144 57.6
Lsat_1_v5_gn_9_77400 Lactuca sativa HOM05D001456 ORTHO05D002799 5.4e-49 198.0 147 61.2
Sed0015340 Sechium edule HOM05D001456 ORTHO05D002799 5.4e-49 198.0 149 61.1
Cc01_g21840 Coffea canephora HOM05D001456 ORTHO05D002799 1.2e-48 196.8 145 58.6
PSO761G0515 Papaver somniferum HOM05D001456 ORTHO05D002799 1.6e-48 196.4 150 58.7
Sp5g01180 Schrenkiella parvula HOM05D001456 ORTHO05D002799 2.7e-48 195.7 144 58.3
CARHR172540 Cardamine hirsuta HOM05D001456 ORTHO05D002799 3.5e-48 195.3 145 55.9
Thhalv10005803m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 3.5e-48 195.3 144 57.6
Nitab4.5_0003841g0010 Nicotiana tabacum HOM05D001456 ORTHO05D002799 4.6e-48 194.9 151 56.3
Nitab4.5_0007320g0020 Nicotiana tabacum HOM05D001456 ORTHO05D002799 6.0e-48 194.5 150 56.0
QL12p034495 Quercus lobata HOM05D001456 ORTHO05D002799 1.0e-47 193.7 150 58.0
VMungo0720G0252 Vigna mungo HOM05D001456 ORTHO05D002799 1.0e-47 193.7 150 56.7
AT3G62200 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 2.3e-47 192.6 144 56.2
Hund11630 Selenicereus undatus HOM05D001456 ORTHO05D002799 5.1e-47 191.4 150 55.3
Oeu044758.1 Olea europaea HOM05D001456 ORTHO05D002799 6.6e-47 191.0 150 56.0
Sed0008463 Sechium edule HOM05D001456 ORTHO05D002799 8.7e-47 190.7 151 58.3
SGA_v2.0_scaffold80G25683 Striga asiatica HOM05D001456 ORTHO05D002799 8.7e-47 190.7 146 54.8
THA.LOC104817439 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 8.7e-47 190.7 149 54.4
Migut.D00022 Erythranthe guttata HOM05D001456 ORTHO05D002799 3.3e-46 188.7 148 56.1
BcaC07g40712 Brassica carinata HOM05D001456 ORTHO05D002799 9.6e-46 187.2 143 55.9
A09p54270 Brassica napus HOM05D001456 ORTHO05D002799 9.6e-46 187.2 143 55.9
BraA09t40839Z Brassica rapa HOM05D001456 ORTHO05D002799 9.6e-46 187.2 143 55.9
C08p37150 Brassica napus HOM05D001456 ORTHO05D002799 2.8e-45 185.7 143 55.2
BolC8t51292H Brassica oleracea HOM05D001456 ORTHO05D002799 2.8e-45 185.7 143 55.2
Aa31LG10G16120 Aethionema arabicum HOM05D001456 ORTHO05D002799 6.2e-45 184.5 143 54.5
EL10As5g23613 Beta vulgaris HOM05D001456 ORTHO05D002799 6.2e-45 184.5 150 55.3
Aqoxy2G02522 Aquilegia oxysepala HOM05D001456 ORTHO05D002799 8.1e-45 184.1 151 57.0
DCAR_018246 Daucus carota HOM05D001456 ORTHO05D002799 1.1e-44 183.7 150 54.0
HanXRQChr03g0088761 Helianthus annuus HOM05D001456 ORTHO05D002799 1.1e-44 183.7 147 56.5
Peaxi162Scf00166g00428 Petunia axillaris HOM05D001456 ORTHO05D002799 1.1e-44 183.7 148 55.4
Ah.11g045840 Amaranthus hybridus HOM05D001456 ORTHO05D002799 5.3e-44 181.4 146 54.8
Aqoxy5G02792 Aquilegia oxysepala HOM05D001456 ORTHO05D002799 9.0e-44 180.6 148 52.7
DCAR_005725 Daucus carota HOM05D001456 ORTHO05D002799 1.5e-43 179.9 149 51.7
Ca_09240_v3 Cicer arietinum L. HOM05D001456 ORTHO05D002799 2.0e-43 179.5 146 54.8
MBI18_g09644_MAGBIO Magnolia biondii HOM05D001456 ORTHO05D002799 2.0e-43 179.5 150 55.3
CDE09G1275 Ceratophyllum demersum HOM05D001456 ORTHO05D002799 4.4e-43 178.3 148 55.4
PGR031G1599 Punica granatum HOM05D001456 ORTHO05D002799 4.4e-43 178.3 151 54.3
PGR031G1658 Punica granatum HOM05D001456 ORTHO05D002799 4.4e-43 178.3 151 54.3
CSS0023005 Camellia sinensis var. sinensis HOM05D001456 ORTHO05D002799 1.3e-42 176.8 124 63.7
PGR142G0814 Punica granatum HOM05D001456 ORTHO05D002799 1.3e-42 176.8 148 52.0
AUR62011701 Chenopodium quinoa HOM05D001456 ORTHO05D002799 2.2e-42 176.0 143 55.9
arahy.Tifrunner.gnm1.ann1.TIM68F Arachis hypogaea HOM05D001456 ORTHO05D002799 3.8e-42 175.3 144 54.9
AUR62024558 Chenopodium quinoa HOM05D001456 ORTHO05D002799 6.4e-42 174.5 143 55.2
QL03p010255 Quercus lobata HOM05D001456 ORTHO05D002799 1.1e-41 173.7 134 56.7
Medtr7g110390 Medicago truncatula HOM05D001456 ORTHO05D002799 1.4e-41 173.3 149 51.7
HanXRQChr03g0088751 Helianthus annuus HOM05D001456 ORTHO05D002799 2.4e-41 172.6 150 52.0
Psat3g018040 Pisum sativum HOM05D001456 ORTHO05D002799 5.4e-41 171.4 145 53.1
PGR031G2409 Punica granatum HOM05D001456 ORTHO05D002799 5.4e-41 171.4 147 52.4
Solyc02g088870.1 Solanum lycopersicum HOM05D001456 ORTHO05D002799 5.4e-41 171.4 149 53.7
Solyc02g088850.3 Solanum lycopersicum HOM05D001456 ORTHO05D002799 7.1e-41 171.0 150 50.7
Sopen02g033570 Solanum pennellii HOM05D001456 ORTHO05D002799 7.1e-41 171.0 149 53.0
PGSC0003DMG400001456 Solanum tuberosum HOM05D001456 ORTHO05D002799 1.2e-40 170.2 149 51.0
Glyma.03G223251 Glycine max HOM05D001456 ORTHO05D002799 1.6e-40 169.9 146 48.6
PSO357G0431 Papaver somniferum HOM05D001456 ORTHO05D002799 2.1e-40 169.5 142 52.1
CAN.G497.102 Capsicum annuum HOM05D001456 ORTHO05D002799 1.3e-39 166.8 149 51.0
PSO170G0651 Papaver somniferum HOM05D001456 ORTHO05D002799 1.3e-39 166.8 142 51.4
TPR.G8451 Trifolium pratense HOM05D001456 ORTHO05D002799 1.3e-39 166.8 151 49.7
Sopen02g033560 Solanum pennellii HOM05D001456 ORTHO05D002799 2.3e-39 166.0 148 50.0
PGSC0003DMG400001458 Solanum tuberosum HOM05D001456 ORTHO05D002799 6.6e-39 164.5 149 49.7
Phvul.001G217000 Phaseolus vulgaris HOM05D001456 ORTHO05D002799 1.5e-38 163.3 156 50.0
PGR031G3460 Punica granatum HOM05D001456 ORTHO05D002799 1.5e-38 163.3 144 50.0
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 3.3e-38 162.2 147 55.1
Ca_09277_v3 Cicer arietinum L. HOM05D001456 ORTHO05D002799 1.1e-36 157.1 151 53.0
ATR0796G271 Amborella trichopoda HOM05D001456 ORTHO05D002799 2.4e-36 156.0 146 47.9
Dinv30943 Davidia involucrata HOM05D001456 ORTHO05D002799 2.4e-36 156.0 95 73.7
Os07g0637200 Oryza sativa ssp. japonica HOM05D001456 ORTHO05D002799 3.8e-34 148.7 150 44.7
Cpa.g.sc519.4 Carica papaya HOM05D001456 ORTHO05D002799 3.2e-33 145.6 95 66.3
Thecc.01G323400 Theobroma cacao HOM05D001456 ORTHO05D002799 3.5e-32 142.1 95 65.3
DCAR_018247 Daucus carota HOM05D000103 ORTHO05D002799 1.3e-31 140.2 123 52.0
CiPaw.07G124200 Carya illinoinensis HOM05D001456 ORTHO05D002799 8.7e-31 137.5 95 65.3
vmacro19767 Vaccinium macrocarpon HOM05D001456 ORTHO05D002799 8.7e-31 137.5 95 65.3
Zm00001eb109990 Zea mays HOM05D001456 ORTHO05D002799 8.7e-31 137.5 142 45.8
Psat3g014920 Pisum sativum HOM05D001456 ORTHO05D002799 2.5e-30 136.0 95 63.2
SEGI_28425 Sequoiadendron giganteum HOM05D001456 ORTHO05D002799 2.4e-28 129.4 143 39.9
Medtr7g108660 Medicago truncatula HOM05D001456 ORTHO05D002799 2.0e-27 126.3 150 42.0
Zm00001eb018010 Zea mays HOM05D001456 ORTHO05D050024 3.4e-27 125.6 141 41.8
PSO210G6614 Papaver somniferum HOM05D001456 ORTHO05D002799 4.5e-27 125.2 98 56.1
Lj5C319T15 Lonicera japonica HOM05D001456 ORTHO05D002799 6.5e-26 121.3 97 61.9
SEGI_20611 Sequoiadendron giganteum HOM05D001456 ORTHO05D004886 1.1e-25 120.6 150 36.0
DCAR_012305 Daucus carota HOM05D001456 ORTHO05D010257 1.3e-23 113.6 144 40.3
Lalb_Chr02g0147591 Lupinus albus HOM05D001456 ORTHO05D002799 2.3e-23 112.8 68 70.6
Zm00001eb328720 Zea mays HOM05D001456 ORTHO05D002799 1.2e-16 90.5 102 46.1
Lj1g0013696 Lotus japonicus HOM05D001456 ORTHO05D002799 3.5e-16 89.0 88 48.9
Lalb_Chr02g0147581 Lupinus albus HOM05D001456 ORTHO05D038992 3.0e-15 85.9 57 64.9
Os03g0370200 Oryza sativa ssp. japonica HOM05D001456 ORTHO05D050024 3.7e-13 79.0 95 42.1
EL10Ac9g20820 Beta vulgaris HOM05D001456 ORTHO05D038992 5.9e-11 71.6 67 46.3
Nn3g21913 Nelumbo nucifera HOM05D001456 ORTHO05D002799 3.9e-07 58.9 45 55.6


User provided reference genes

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