Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A199T13 Lonicera japonica HOM05D002982 ORTHO05D003345 2.0e-49 198.7 96 100.0
Lj8A617T9 Lonicera japonica HOM05D002982 ORTHO05D003345 3.6e-43 177.9 123 76.4
Lj9A484T60 Lonicera japonica HOM05D002982 ORTHO05D003345 3.7e-32 141.4 160 54.4
Lj2P1038T36 Lonicera japonica HOM05D002982 ORTHO05D003345 1.3e-24 116.3 99 63.6
Lj3A541T21 Lonicera japonica HOM05D002982 ORTHO05D003345 1.4e-15 86.3 136 43.4
Lsat_1_v5_gn_2_94621 Lactuca sativa HOM05D002982 ORTHO05D003345 3.3e-12 75.1 94 47.9
Prupe.5G145000 Prunus persica HOM05D002982 ORTHO05D003345 4.3e-12 74.7 170 36.5
Rhsim08G0194700 Rhododendron simsii HOM05D002982 ORTHO05D003345 8.1e-11 70.5 38 81.6
vmacro19156 Vaccinium macrocarpon HOM05D002982 ORTHO05D003345 8.1e-11 70.5 38 81.6
TWI34G0377 Tripterygium wilfordii HOM05D002982 ORTHO05D003345 1.4e-10 69.7 106 42.5
Actinidia18322 Actinidia chinensis HOM05D002982 ORTHO05D003345 1.8e-10 69.3 34 91.2
ECA232G4301 Erigeron canadensis HOM05D002982 ORTHO05D003345 2.4e-10 68.9 34 91.2
MSTRG.9345 Avicennia marina HOM05D002982 ORTHO05D003345 3.1e-10 68.6 34 91.2
Migut.D01301 Erythranthe guttata HOM05D002982 ORTHO05D003345 3.1e-10 68.6 34 91.2
HanXRQChr09g0273621 Helianthus annuus HOM05D002982 ORTHO05D003345 3.1e-10 68.6 34 88.2
CSS0022023 Camellia sinensis var. sinensis HOM05D002982 ORTHO05D003345 5.2e-10 67.8 35 88.6
Nitab4.5_0001825g0020 Nicotiana tabacum HOM05D002982 ORTHO05D003345 5.2e-10 67.8 34 88.2
PGSC0003DMG400012026 Solanum tuberosum HOM05D002982 ORTHO05D003345 5.2e-10 67.8 34 88.2
CAN.G637.62 Capsicum annuum HOM05D002982 ORTHO05D003345 6.8e-10 67.4 34 85.3
Hma1.2p1_0168F.1_g074180 Hydrangea macrophylla HOM05D002982 ORTHO05D003345 6.8e-10 67.4 34 88.2
SalBow1G1963 Salvia bowleyana HOM05D002982 ORTHO05D003345 6.8e-10 67.4 34 88.2
Oeu058112.1 Olea europaea HOM05D002982 ORTHO05D003345 1.2e-09 66.6 34 85.3
Peaxi162Scf00171g01126 Petunia axillaris HOM05D002982 ORTHO05D003345 1.2e-09 66.6 80 46.2
Cc04_g09490 Coffea canephora HOM05D002982 ORTHO05D003345 1.5e-09 66.2 34 85.3
Lsat_1_v5_gn_4_83620 Lactuca sativa HOM05D002982 ORTHO05D003345 2.0e-09 65.9 34 88.2
Solyc03g097710.4 Solanum lycopersicum HOM05D002982 ORTHO05D003345 2.0e-09 65.9 34 85.3
Sopen03g028460 Solanum pennellii HOM05D002982 ORTHO05D003345 2.0e-09 65.9 34 85.3
SGA_v2.0_scaffold40G15634 Striga asiatica HOM05D002982 ORTHO05D003345 2.0e-09 65.9 34 85.3
Actinidia25538 Actinidia chinensis HOM05D002982 ORTHO05D003345 2.6e-09 65.5 34 88.2
Nitab4.5_0001451g0030 Nicotiana tabacum HOM05D002982 ORTHO05D003345 2.6e-09 65.5 34 85.3
GSVIVG01008617001 Vitis vinifera HOM05D002982 ORTHO05D003345 2.6e-09 65.5 34 85.3
DCAR_007513 Daucus carota HOM05D002982 ORTHO05D003345 3.4e-09 65.1 34 85.3
arahy.Tifrunner.gnm1.ann1.7VWR4R Arachis hypogaea HOM05D002982 ORTHO05D003345 4.4e-09 64.7 35 82.9
arahy.Tifrunner.gnm1.ann1.MH3BZ3 Arachis hypogaea HOM05D002982 ORTHO05D003345 4.4e-09 64.7 35 82.9
Manes.04G090400 Manihot esculenta HOM05D002982 ORTHO05D003345 4.4e-09 64.7 38 78.9
DCAR_026255 Daucus carota HOM05D002982 ORTHO05D003345 5.8e-09 64.3 34 82.4
ATR0582G283 Amborella trichopoda HOM05D002982 ORTHO05D003345 1.3e-08 63.2 93 40.9
MD06G1134000 Malus domestica HOM05D002982 ORTHO05D003345 1.7e-08 62.8 31 87.1
VMungo1309G2135 Vigna mungo HOM05D002982 ORTHO05D003345 1.7e-08 62.8 35 77.1
QL02p070408 Quercus lobata HOM05D002982 ORTHO05D003345 2.2e-08 62.4 34 82.4
QL10p001113 Quercus lobata HOM05D002982 ORTHO05D003345 2.2e-08 62.4 34 82.4
Dinv23195 Davidia involucrata HOM05D002982 ORTHO05D003345 2.9e-08 62.0 34 79.4
Migut.F00028 Erythranthe guttata HOM05D002982 ORTHO05D003345 2.9e-08 62.0 34 82.4
Glyma.06G166100 Glycine max HOM05D002982 ORTHO05D003345 2.9e-08 62.0 35 77.1
SGA_v2.0_scaffold253G45161 Striga asiatica HOM05D002982 ORTHO05D003345 2.9e-08 62.0 34 82.4
Duzib205G0494 Durio zibethinus HOM05D002982 ORTHO05D003345 3.8e-08 61.6 34 82.4
Manes.14G047000 Manihot esculenta HOM05D002982 ORTHO05D003345 3.8e-08 61.6 34 79.4
Nn1g09960 Nelumbo nucifera HOM05D002982 ORTHO05D003345 3.8e-08 61.6 34 79.4
Nn4g22202 Nelumbo nucifera HOM05D002982 ORTHO05D003345 3.8e-08 61.6 34 79.4
Oeu020406.4 Olea europaea HOM05D002982 ORTHO05D003345 3.8e-08 61.6 31 87.1
FvH4_5g09080 Fragaria vesca HOM05D002982 ORTHO05D003345 4.9e-08 61.2 34 79.4
FAN08G2795 Fragaria x ananassa HOM05D002982 ORTHO05D003345 4.9e-08 61.2 34 79.4
FAN18G2382 Fragaria x ananassa HOM05D002982 ORTHO05D003345 4.9e-08 61.2 34 79.4
Glyma.19G097300 Glycine max HOM05D002982 ORTHO05D003345 4.9e-08 61.2 89 43.8
Psat5g053800 Pisum sativum HOM05D002982 ORTHO05D003345 4.9e-08 61.2 35 74.3
Sabra15G0123000 Salix brachista HOM05D002982 ORTHO05D003345 4.9e-08 61.2 34 79.4
Sc10g0010790 Simmondsia chinensis HOM05D002982 ORTHO05D003345 4.9e-08 61.2 32 87.5
Thecc.03G137100 Theobroma cacao HOM05D002982 ORTHO05D003345 4.9e-08 61.2 34 82.4
Atru.chr6.1891 Acer truncatum HOM05D002982 ORTHO05D003345 6.4e-08 60.8 93 41.9
AUR62003386 Chenopodium quinoa HOM05D002982 ORTHO05D003345 6.4e-08 60.8 34 79.4
AUR62029444 Chenopodium quinoa HOM05D002982 ORTHO05D003345 6.4e-08 60.8 34 79.4
Duzib264G1039 Durio zibethinus HOM05D002982 ORTHO05D003345 6.4e-08 60.8 93 40.9
FAN14G1398 Fragaria x ananassa HOM05D002982 ORTHO05D003345 6.4e-08 60.8 93 40.9
Lalb_Chr22g0360111 Lupinus albus HOM05D002982 ORTHO05D003345 6.4e-08 60.8 38 76.3
Potri.015G103500 Populus trichocarpa HOM05D002982 ORTHO05D003345 6.4e-08 60.8 91 41.8
SalBow4G1297 Salvia bowleyana HOM05D002982 ORTHO05D003345 6.4e-08 60.8 35 77.1
SalBow4G3069 Salvia bowleyana HOM05D002982 ORTHO05D003345 6.4e-08 60.8 35 77.1
Atru.chr6.2624 Acer truncatum HOM05D002982 ORTHO05D003345 8.4e-08 60.5 34 79.4
ClCG05G013950 Citrullus lanatus HOM05D002982 ORTHO05D003345 8.4e-08 60.5 35 77.1
Ciclev10014350m.g Citrus clementina HOM05D002982 ORTHO05D003345 8.4e-08 60.5 34 79.4
MELO3C014939.2 Cucumis melo HOM05D002982 ORTHO05D003345 8.4e-08 60.5 35 77.1
CsaV3_3G026450 Cucumis sativus L. HOM05D002982 ORTHO05D003345 8.4e-08 60.5 35 77.1
DCAR_014485 Daucus carota HOM05D002982 ORTHO05D003345 8.4e-08 60.5 34 76.5
FAN02G0330 Fragaria x ananassa HOM05D002982 ORTHO05D003345 8.4e-08 60.5 93 39.8
Manes.11G079500 Manihot esculenta HOM05D002982 ORTHO05D003345 8.4e-08 60.5 34 79.4
Psat3g095960 Pisum sativum HOM05D002982 ORTHO05D003345 8.4e-08 60.5 35 77.1
Potri.001G324700 Populus trichocarpa HOM05D002982 ORTHO05D003345 8.4e-08 60.5 34 79.4
Sabra16G0207200 Salix brachista HOM05D002982 ORTHO05D003345 8.4e-08 60.5 34 79.4
Sed0017891 Sechium edule HOM05D002982 ORTHO05D003345 8.4e-08 60.5 35 77.1
TAR622G1079 Trochodendron aralioides HOM05D002982 ORTHO05D003345 8.4e-08 60.5 31 87.1
COL.COLO4_16681 Corchorus olitorius HOM05D002982 ORTHO05D003345 1.1e-07 60.1 34 79.4
Lj7A614T39 Lonicera japonica HOM05D002982 ORTHO05D003345 1.1e-07 60.1 35 74.3
PSO017G6489 Papaver somniferum HOM05D002982 ORTHO05D003345 1.1e-07 60.1 34 79.4
RcHm_v2.0_Chr7g0189131 Rosa chinensis HOM05D002982 ORTHO05D003345 1.1e-07 60.1 34 76.5
Ca_08109_v3 Cicer arietinum L. HOM05D002982 ORTHO05D003345 1.4e-07 59.7 34 79.4
Haze_07124 Corylus avellana HOM05D002982 ORTHO05D003345 1.4e-07 59.7 93 40.9
Dinv33300 Davidia involucrata HOM05D002982 ORTHO05D003345 1.4e-07 59.7 34 76.5
Glyma.16G051500 Glycine max HOM05D002982 ORTHO05D003345 1.4e-07 59.7 34 79.4
Os08g0536100 Oryza sativa ssp. japonica HOM05D002982 ORTHO05D003345 1.4e-07 59.7 35 80.0
PSO478G2627 Papaver somniferum HOM05D002982 ORTHO05D003345 1.4e-07 59.7 34 79.4
Phvul.001G088000 Phaseolus vulgaris HOM05D002982 ORTHO05D003345 1.4e-07 59.7 34 79.4
Rhsim10G0002900 Rhododendron simsii HOM05D002982 ORTHO05D003345 1.4e-07 59.7 34 79.4
Sed0004289 Sechium edule HOM05D002982 ORTHO05D003345 1.4e-07 59.7 34 79.4
Sc10g0010700 Simmondsia chinensis HOM05D002982 ORTHO05D003345 1.4e-07 59.7 32 84.4
vmacro05986 Vaccinium macrocarpon HOM05D002982 ORTHO05D003345 1.4e-07 59.7 34 79.4
Actinidia36236 Actinidia chinensis HOM05D002982 ORTHO05D003345 1.9e-07 59.3 34 79.4
CSS0022268 Camellia sinensis var. sinensis HOM05D002982 ORTHO05D003345 1.9e-07 59.3 34 79.4
CSS0033531 Camellia sinensis var. sinensis HOM05D002982 ORTHO05D003345 1.9e-07 59.3 34 79.4
CSS0040616 Camellia sinensis var. sinensis HOM05D002982 ORTHO05D003345 1.9e-07 59.3 34 79.4
FAN13G0170 Fragaria x ananassa HOM05D002982 ORTHO05D003345 1.9e-07 59.3 34 76.5
Lalb_Chr14g0363821 Lupinus albus HOM05D002982 ORTHO05D003345 1.9e-07 59.3 35 80.0
Phvul.009G163600 Phaseolus vulgaris HOM05D002982 ORTHO05D003345 1.9e-07 59.3 35 74.3
EL10Ac6g15460 Beta vulgaris HOM05D002982 ORTHO05D003345 2.4e-07 58.9 34 73.5
Cfa007187 Carpinus fangiana HOM05D002982 ORTHO05D003345 2.4e-07 58.9 34 76.5
CiPaw.03G004000 Carya illinoinensis HOM05D002982 ORTHO05D003345 2.4e-07 58.9 34 76.5
CDE02G0961 Ceratophyllum demersum HOM05D002982 ORTHO05D003345 2.4e-07 58.9 34 76.5
Haze_14921 Corylus avellana HOM05D002982 ORTHO05D003345 2.4e-07 58.9 34 76.5
Eucgr.K02203 Eucalyptus grandis HOM05D002982 ORTHO05D003345 2.4e-07 58.9 34 76.5
MD17G1010000 Malus domestica HOM05D002982 ORTHO05D003345 2.4e-07 58.9 34 76.5
Medtr3g098740 Medicago truncatula HOM05D002982 ORTHO05D003345 2.4e-07 58.9 34 73.5
Nn3g16339 Nelumbo nucifera HOM05D002982 ORTHO05D003345 2.4e-07 58.9 34 76.5
Prupe.3G311000 Prunus persica HOM05D002982 ORTHO05D003345 2.4e-07 58.9 34 76.5
Potri.012G104200 Populus trichocarpa HOM05D002982 ORTHO05D003345 3.2e-07 58.5 34 76.5
Sabra12G0076600 Salix brachista HOM05D002982 ORTHO05D003345 3.2e-07 58.5 34 76.5
Sc04g0000340 Simmondsia chinensis HOM05D002982 ORTHO05D003345 3.2e-07 58.5 31 80.6
TPR.G21585 Trifolium pratense HOM05D002982 ORTHO05D003345 3.2e-07 58.5 35 68.6
unitig_61.g26380 Utricularia gibba HOM05D002982 ORTHO05D003345 3.2e-07 58.5 34 76.5
arahy.Tifrunner.gnm1.ann1.18FPP0 Arachis hypogaea HOM05D002982 ORTHO05D003345 4.2e-07 58.2 31 83.9
arahy.Tifrunner.gnm1.ann1.B6N7K9 Arachis hypogaea HOM05D002982 ORTHO05D003345 4.2e-07 58.2 31 83.9
Cpa.g.sc4.124 Carica papaya HOM05D002982 ORTHO05D003345 4.2e-07 58.2 34 76.5
Ciclev10030778m.g Citrus clementina HOM05D002982 ORTHO05D003345 4.2e-07 58.2 34 76.5
Lj1g0012367 Lotus japonicus HOM05D002982 ORTHO05D003345 4.2e-07 58.2 35 71.4
Medtr7g083230 Medicago truncatula HOM05D002982 ORTHO05D003345 4.2e-07 58.2 34 76.5
Sc03g0005900 Simmondsia chinensis HOM05D002982 ORTHO05D003345 4.2e-07 58.2 34 76.5
Thecc.04G043100 Theobroma cacao HOM05D002982 ORTHO05D003345 4.2e-07 58.2 34 76.5
TPR.G21110 Trifolium pratense HOM05D002982 ORTHO05D003345 4.2e-07 58.2 34 76.5
Ah.03g148330 Amaranthus hybridus HOM05D002982 ORTHO05D003345 5.4e-07 57.8 34 76.5
CSS0004292 Camellia sinensis var. sinensis HOM05D002982 ORTHO05D003345 5.4e-07 57.8 34 76.5
CSS0048135 Camellia sinensis var. sinensis HOM05D002982 ORTHO05D003345 5.4e-07 57.8 34 76.5
Cpa.g.sc70.99 Carica papaya HOM05D002982 ORTHO05D003345 5.4e-07 57.8 31 80.6
CDE06G0015 Ceratophyllum demersum HOM05D002982 ORTHO05D003345 5.4e-07 57.8 34 73.5
FvH4_6g54040 Fragaria vesca HOM05D002982 ORTHO05D003345 5.4e-07 57.8 34 76.5
FAN09G1637 Fragaria x ananassa HOM05D002982 ORTHO05D003345 5.4e-07 57.8 34 76.5
FAN25G2251 Fragaria x ananassa HOM05D002982 ORTHO05D003345 5.4e-07 57.8 101 39.6
Gohir.A03G054900 Gossypium hirsutum HOM05D002982 ORTHO05D003345 5.4e-07 57.8 34 73.5
Gohir.D03G112000 Gossypium hirsutum HOM05D002982 ORTHO05D003345 5.4e-07 57.8 34 73.5
Gorai.003G118300 Gossypium raimondii HOM05D002982 ORTHO05D003345 5.4e-07 57.8 34 73.5
MD14G1150300 Malus domestica HOM05D002982 ORTHO05D003345 5.4e-07 57.8 31 80.6
Manes.06G124400 Manihot esculenta HOM05D002982 ORTHO05D003345 5.4e-07 57.8 34 73.5
PSO017G5996 Papaver somniferum HOM05D002982 ORTHO05D003345 5.4e-07 57.8 93 39.8
THA.LOC104825647 Tarenaya hassleriana HOM05D002982 ORTHO05D003345 5.4e-07 57.8 38 71.1
unitig_0.g1258 Utricularia gibba HOM05D003078 ORTHO05D003545 5.4e-07 57.8 34 76.5
HPP92_003183 Vanilla planifolia HOM05D002982 ORTHO05D003345 5.4e-07 57.8 38 68.4
VMungo1383G3008 Vigna mungo HOM05D002076 ORTHO05D002087 5.4e-07 57.8 34 76.5
GSVIVG01033027001 Vitis vinifera HOM05D002982 ORTHO05D003345 5.4e-07 57.8 93 38.7
Aqoxy5G03221 Aquilegia oxysepala HOM05D002982 ORTHO05D003345 7.1e-07 57.4 34 73.5
CiPaw.04G002700 Carya illinoinensis HOM05D002982 ORTHO05D003345 7.1e-07 57.4 34 73.5
Eucgr.H03363 Eucalyptus grandis HOM05D002982 ORTHO05D003345 7.1e-07 57.4 38 71.1
Gohir.A05G335100 Gossypium hirsutum HOM05D002982 ORTHO05D003345 7.1e-07 57.4 34 76.5
Gohir.D04G073900 Gossypium hirsutum HOM05D002982 ORTHO05D003345 7.1e-07 57.4 34 76.5
Gorai.012G083300 Gossypium raimondii HOM05D002982 ORTHO05D003345 7.1e-07 57.4 34 76.5
Lj1g0002944 Lotus japonicus HOM05D002982 ORTHO05D003345 7.1e-07 57.4 93 39.8
PGR083G2252 Punica granatum HOM05D002982 ORTHO05D003345 7.1e-07 57.4 95 40.0
RcHm_v2.0_Chr2g0176221 Rosa chinensis HOM05D002982 ORTHO05D003345 7.1e-07 57.4 34 73.5
EL10Ac6g15462 Beta vulgaris HOM05D002982 ORTHO05D003345 9.3e-07 57.0 35 68.6
MD09G1006000 Malus domestica HOM05D002982 ORTHO05D003345 9.3e-07 57.0 34 73.5
TAR374G0366 Trochodendron aralioides HOM05D002982 ORTHO05D003345 9.3e-07 57.0 31 80.6
Duzib147G0161 Durio zibethinus HOM05D002982 ORTHO05D003345 1.2e-06 56.6 34 73.5
TWI60G0718 Tripterygium wilfordii HOM05D002982 ORTHO05D003345 1.2e-06 56.6 31 80.6
COL.COLO4_13321 Corchorus olitorius HOM05D002982 ORTHO05D003345 1.6e-06 56.2 31 80.6
THA.LOC104805314 Tarenaya hassleriana HOM05D002982 ORTHO05D003345 1.6e-06 56.2 34 73.5
HPP92_006986 Vanilla planifolia HOM05D002982 ORTHO05D003345 1.6e-06 56.2 34 70.6
CDE05G3294 Ceratophyllum demersum HOM05D002982 ORTHO05D003345 2.1e-06 55.8 35 71.4
Os09g0509400 Oryza sativa ssp. japonica HOM05D002982 ORTHO05D003345 2.1e-06 55.8 38 65.8
SEGI_25387 Sequoiadendron giganteum HOM05D002982 ORTHO05D003345 2.1e-06 55.8 38 65.8
Cc07_g01120 Coffea canephora HOM05D002982 ORTHO05D003345 2.7e-06 55.5 34 70.6
Gohir.A07G231200 Gossypium hirsutum HOM05D002982 ORTHO05D003345 2.7e-06 55.5 38 71.1
HanXRQChr14g0451301 Helianthus annuus HOM05D002982 ORTHO05D003345 2.7e-06 55.5 90 38.9
CANSAT64G1652 Cannabis sativa HOM05D002982 ORTHO05D003345 3.5e-06 55.1 31 77.4
Hund04251 Selenicereus undatus HOM05D002982 ORTHO05D003345 4.6e-06 54.7 94 39.4
Zm00001eb036950 Zea mays HOM05D002982 ORTHO05D003345 4.6e-06 54.7 38 65.8
Lalb_Chr11g0069321 Lupinus albus HOM05D002982 ORTHO05D003345 6.0e-06 54.3 35 68.6
PSO478G0665 Papaver somniferum HOM05D002982 ORTHO05D003345 6.0e-06 54.3 34 73.5
AUR62029533 Chenopodium quinoa HOM05D002982 ORTHO05D003345 7.8e-06 53.9 31 77.4
AUR62034791 Chenopodium quinoa HOM05D002982 ORTHO05D003345 7.8e-06 53.9 31 77.4


User provided reference genes

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