Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 8.2e-79 297.0 148 100.0
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 3.9e-28 128.6 130 62.3
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 3.6e-26 122.1 80 81.2
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 3.6e-26 122.1 80 81.2
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.8e-25 119.8 125 57.6
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 3.7e-23 112.1 80 77.5
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 5.4e-22 108.2 125 52.8
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.0e-20 104.0 80 68.8
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.0e-20 104.0 80 68.8
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.3e-20 102.8 80 67.5
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 2.3e-20 102.8 125 48.8
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 3.0e-20 102.4 124 49.2
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.6e-20 100.9 80 66.2
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 1.1e-19 100.5 125 49.6
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 1.9e-19 99.8 150 42.0
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 2.5e-19 99.4 80 62.5
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 2.5e-19 99.4 125 47.2
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 3.3e-19 99.0 80 61.2
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 4.3e-19 98.6 125 47.2
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 4.3e-19 98.6 125 47.2
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 4.3e-19 98.6 80 66.2
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 5.6e-19 98.2 77 61.0
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 5.6e-19 98.2 80 61.2
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 5.6e-19 98.2 80 63.8
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 9.5e-19 97.4 80 63.8
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.2e-18 97.1 124 46.8
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 1.2e-18 97.1 125 45.6
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 1.6e-18 96.7 126 47.6
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 2.1e-18 96.3 124 46.0
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 2.1e-18 96.3 125 44.8
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 2.1e-18 96.3 125 46.4
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 2.8e-18 95.9 124 46.8
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 2.8e-18 95.9 79 64.6
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 2.8e-18 95.9 80 60.0
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 2.8e-18 95.9 80 60.0
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 2.8e-18 95.9 125 44.8
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 3.6e-18 95.5 80 63.8
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 3.6e-18 95.5 124 45.2
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 4.7e-18 95.1 77 62.3
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 4.7e-18 95.1 77 62.3
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 6.2e-18 94.7 124 45.2
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 6.2e-18 94.7 124 45.2
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 6.2e-18 94.7 79 59.5
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 8.1e-18 94.4 124 45.2
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 1.1e-17 94.0 80 57.5
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 1.1e-17 94.0 124 46.0
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.1e-17 94.0 125 45.6
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 1.1e-17 94.0 79 63.3
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.1e-17 94.0 80 61.2
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 1.4e-17 93.6 124 45.2
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 1.8e-17 93.2 124 44.4
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 1.8e-17 93.2 79 60.8
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 2.3e-17 92.8 79 57.0
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 2.3e-17 92.8 79 57.0
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 3.1e-17 92.4 79 55.7
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 4.0e-17 92.0 79 55.7
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 4.0e-17 92.0 79 55.7
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 5.2e-17 91.7 80 60.0
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 6.8e-17 91.3 79 59.5
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 6.8e-17 91.3 80 56.2
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 8.9e-17 90.9 79 60.8
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 8.9e-17 90.9 76 59.2
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 1.2e-16 90.5 125 44.8
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 1.2e-16 90.5 125 44.8
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.2e-16 90.5 125 45.6
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.2e-16 90.5 125 45.6
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 1.5e-16 90.1 81 56.8
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 1.5e-16 90.1 125 44.0
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 1.5e-16 90.1 79 58.2
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 2.0e-16 89.7 79 60.8
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.0e-16 89.7 125 44.0
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 2.0e-16 89.7 80 55.0
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 2.6e-16 89.4 83 55.4
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 2.6e-16 89.4 124 44.4
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 7.5e-16 87.8 80 55.0
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 9.9e-16 87.4 79 59.5
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 9.9e-16 87.4 125 45.6
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.7e-15 86.7 76 60.5
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 1.7e-15 86.7 79 57.0
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 2.2e-15 86.3 125 45.6
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 2.9e-15 85.9 79 55.7
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 4.9e-15 85.1 124 44.4
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 6.4e-15 84.7 81 50.6
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 6.4e-15 84.7 56 78.6
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 6.4e-15 84.7 125 43.2
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 8.3e-15 84.3 79 55.7
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 8.3e-15 84.3 77 57.1
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 8.3e-15 84.3 77 57.1
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 1.1e-14 84.0 79 50.6
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 1.1e-14 84.0 124 41.9
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 1.4e-14 83.6 79 58.2
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 1.4e-14 83.6 96 50.0
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 1.9e-14 83.2 76 57.9
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 3.2e-14 82.4 73 63.0
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 4.1e-14 82.0 80 57.5
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 4.1e-14 82.0 125 44.0
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 5.4e-14 81.6 76 56.6
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 5.4e-14 81.6 76 52.6
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 5.4e-14 81.6 77 54.5
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 7.1e-14 81.3 77 54.5
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 7.1e-14 81.3 80 56.2
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 9.2e-14 80.9 76 56.6
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 1.2e-13 80.5 124 40.3
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 1.6e-13 80.1 118 41.5
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 2.7e-13 79.3 80 55.0
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 3.5e-13 79.0 80 51.2
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 4.6e-13 78.6 79 53.2
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 1.7e-12 76.6 79 50.6
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 3.0e-12 75.9 125 39.2
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 3.0e-12 75.9 80 50.0
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 5.1e-12 75.1 79 46.8
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.1e-11 73.9 124 36.3
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.5e-11 73.6 80 47.5
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 2.5e-11 72.8 80 51.2
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.3e-11 72.4 63 63.5
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 4.3e-11 72.0 79 49.4
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 9.5e-11 70.9 79 49.4
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.8e-10 69.3 62 61.3
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 7.6e-08 61.2 83 48.2
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 9.9e-08 60.8 65 47.7
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 2.2e-07 59.7 36 75.0
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 6.4e-07 58.2 104 39.4
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 8.4e-07 57.8 75 44.0
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 5.4e-06 55.1 25 100.0
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 7.1e-06 54.7 28 85.7


User provided reference genes

Program Settings