Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8P534T4 Lonicera japonica HOM05D007157 ORTHO05D009045 7.7e-71 270.4 138 100.0
Lj5A824G14 Lonicera japonica HOM05D007157 ORTHO05D009045 1.3e-57 226.5 133 86.5
Hma1.2p1_0812F.1_g222250 Hydrangea macrophylla HOM05D007157 ORTHO05D009045 1.8e-48 196.1 133 72.2
CSS0034431 Camellia sinensis var. sinensis HOM05D007157 ORTHO05D009045 1.2e-47 193.4 133 73.7
RcHm_v2.0_Chr2g0175991 Rosa chinensis HOM05D007157 ORTHO05D009045 2.9e-46 188.7 133 70.7
Actinidia36218 Actinidia chinensis HOM05D007157 ORTHO05D009045 5.0e-46 188.0 133 70.7
Dinv25644 Davidia involucrata HOM05D007157 ORTHO05D009045 5.0e-46 188.0 133 69.9
Haze_14901 Corylus avellana HOM05D007157 ORTHO05D009045 5.5e-45 184.5 134 67.9
Cfa007204 Carpinus fangiana HOM05D007157 ORTHO05D009045 7.2e-45 184.1 134 67.9
vmacro05975 Vaccinium macrocarpon HOM05D007157 ORTHO05D009045 2.1e-44 182.6 130 70.8
Duzib147G0388 Durio zibethinus HOM05D007157 ORTHO05D009045 4.7e-44 181.4 131 69.5
CANSAT64G2603 Cannabis sativa HOM05D007157 ORTHO05D009045 1.4e-43 179.9 131 67.9
MD09G1008000 Malus domestica HOM05D007157 ORTHO05D009045 1.8e-43 179.5 133 70.7
Rhsim10G0004500 Rhododendron simsii HOM05D007157 ORTHO05D009045 1.8e-43 179.5 130 67.7
Thecc.04G040600 Theobroma cacao HOM05D007157 ORTHO05D009045 1.8e-43 179.5 131 70.2
DCAR_021804 Daucus carota HOM05D007157 ORTHO05D009045 2.3e-43 179.1 131 69.5
CiPaw.03G058300 Carya illinoinensis HOM05D007157 ORTHO05D009045 4.0e-43 178.3 133 66.9
MSTRG.23478 Avicennia marina HOM05D007157 ORTHO05D009045 5.2e-43 177.9 130 67.7
FvH4_6g53850 Fragaria vesca HOM05D007157 ORTHO05D009045 6.8e-43 177.6 133 67.7
FAN05G0711 Fragaria x ananassa HOM05D007157 ORTHO05D009045 6.8e-43 177.6 133 67.7
FAN14G2967 Fragaria x ananassa HOM05D007157 ORTHO05D009045 6.8e-43 177.6 133 67.7
Manes.04G088300 Manihot esculenta HOM05D007157 ORTHO05D009045 6.8e-43 177.6 131 66.4
Potri.001G326800 Populus trichocarpa HOM05D007157 ORTHO05D009045 6.8e-43 177.6 133 64.7
Prupe.3G308900 Prunus persica HOM05D007157 ORTHO05D009045 6.8e-43 177.6 133 66.9
Sabra16G0209300 Salix brachista HOM05D007157 ORTHO05D009045 6.8e-43 177.6 133 64.7
COL.COLO4_13293 Corchorus olitorius HOM05D000485 ORTHO05D009045 2.0e-42 176.0 131 67.9
Oeu048928.2 Olea europaea HOM05D007157 ORTHO05D009045 2.0e-42 176.0 128 69.5
GSVIVG01033052001 Vitis vinifera HOM05D007157 ORTHO05D009045 2.0e-42 176.0 133 65.4
Sc03g0006270 Simmondsia chinensis HOM05D007157 ORTHO05D009045 3.4e-42 175.3 130 64.6
CAN.G473.124 Capsicum annuum HOM05D007157 ORTHO05D009045 4.4e-42 174.9 130 69.2
Atru.chr6.2599 Acer truncatum HOM05D007157 ORTHO05D009045 5.7e-42 174.5 131 67.2
HanXRQChr17g0551661 Helianthus annuus HOM05D007157 ORTHO05D009045 9.8e-42 173.7 133 66.2
Gohir.D04G075000 Gossypium hirsutum HOM05D007157 ORTHO05D009045 1.3e-41 173.3 131 67.9
Gorai.012G084300 Gossypium raimondii HOM05D007157 ORTHO05D009045 1.3e-41 173.3 131 67.9
QL02p070811 Quercus lobata HOM05D007157 ORTHO05D009045 1.3e-41 173.3 133 66.2
Lj5A791T21 Lonicera japonica HOM05D007157 ORTHO05D009045 2.8e-41 172.2 133 71.4
Glyma.16G053700 Glycine max HOM05D007157 ORTHO05D009045 3.7e-41 171.8 133 62.4
Gohir.A05G336500 Gossypium hirsutum HOM05D007157 ORTHO05D009045 4.8e-41 171.4 131 67.2
Eucgr.H03351 Eucalyptus grandis HOM05D007157 ORTHO05D009045 1.1e-40 170.2 133 63.2
Cpa.g.c35912 Carica papaya HOM05D007157 ORTHO05D009045 2.4e-40 169.1 133 65.4
Phvul.001G089400 Phaseolus vulgaris HOM05D007157 ORTHO05D009045 4.1e-40 168.3 133 60.9
Aqoxy5G03262 Aquilegia oxysepala HOM05D007157 ORTHO05D009045 7.0e-40 167.5 130 63.1
TWI34G0589 Tripterygium wilfordii HOM05D007157 ORTHO05D009045 9.1e-40 167.2 131 63.4
TWI34G1752 Tripterygium wilfordii HOM05D007157 ORTHO05D009045 9.1e-40 167.2 131 63.4
ECA246G1262 Erigeron canadensis HOM05D000482 ORTHO05D000349 1.2e-39 166.8 130 63.8
Migut.H00838 Erythranthe guttata HOM05D007157 ORTHO05D009045 3.5e-39 165.2 130 63.8
Lsat_1_v5_gn_0_3360 Lactuca sativa HOM05D007157 ORTHO05D009045 3.5e-39 165.2 133 62.4
Nitab4.5_0005858g0130 Nicotiana tabacum HOM05D000485 ORTHO05D009045 3.5e-39 165.2 130 66.2
Nitab4.5_0000519g0020 Nicotiana tabacum HOM05D007157 ORTHO05D009045 4.5e-39 164.9 130 65.4
PGSC0003DMG400020245 Solanum tuberosum HOM05D007157 ORTHO05D009045 5.9e-39 164.5 130 65.4
TAR629G1749 Trochodendron aralioides HOM05D007157 ORTHO05D009045 1.3e-38 163.3 133 62.4
AUR62029427 Chenopodium quinoa HOM05D007157 ORTHO05D009045 3.8e-38 161.8 130 60.8
SalBow3G1100 Salvia bowleyana HOM05D007157 ORTHO05D009045 3.8e-38 161.8 130 63.1
PGR083G0651 Punica granatum HOM05D007157 ORTHO05D009045 8.5e-38 160.6 132 59.8
AUR62003414 Chenopodium quinoa HOM05D000173 ORTHO05D006747 1.1e-37 160.2 130 60.0
PSO017G3067 Papaver somniferum HOM05D007157 ORTHO05D009045 1.9e-37 159.5 133 60.2
Lj1g0010660 Lotus japonicus HOM05D007157 ORTHO05D009045 2.5e-37 159.1 133 57.9
Lalb_Chr00c01g0403821 Lupinus albus HOM05D007157 ORTHO05D009045 2.5e-37 159.1 133 58.6
Actinidia05886 Actinidia chinensis HOM05D007157 ORTHO05D009045 3.2e-37 158.7 120 68.3
Ah.03g148180 Amaranthus hybridus HOM05D007157 ORTHO05D009045 3.2e-37 158.7 132 59.8
EL10Ac6g15443 Beta vulgaris HOM05D007157 ORTHO05D009045 3.2e-37 158.7 137 57.7
SalBow3G1401 Salvia bowleyana HOM05D007157 ORTHO05D009045 3.2e-37 158.7 130 62.3
Sed0017582 Sechium edule HOM05D007157 ORTHO05D009045 5.5e-37 157.9 132 59.1
Solyc02g094310.3 Solanum lycopersicum HOM05D007157 ORTHO05D009045 7.2e-37 157.5 130 63.1
Sopen02g038950 Solanum pennellii HOM05D007157 ORTHO05D009045 7.2e-37 157.5 130 63.1
Peaxi162Scf00420g00637 Petunia axillaris HOM05D007157 ORTHO05D009045 1.6e-36 156.4 130 63.1
SGA_v2.0_scaffold211G42168 Striga asiatica HOM05D007157 ORTHO05D009045 2.1e-36 156.0 130 59.2
MELO3C008172.2 Cucumis melo HOM05D007157 ORTHO05D009045 2.7e-36 155.6 132 56.1
FAN02G1074 Fragaria x ananassa HOM05D007157 ORTHO05D009045 4.7e-36 154.8 133 60.9
ClCG11G009400 Citrullus lanatus HOM05D007157 ORTHO05D009045 6.1e-36 154.5 132 56.8
CsaV3_2G034000 Cucumis sativus L. HOM05D007157 ORTHO05D009045 1.4e-35 153.3 132 56.1
VMungo1383G0567 Vigna mungo HOM05D007157 ORTHO05D009045 1.4e-35 153.3 133 56.4
Sp6g29920 Schrenkiella parvula HOM05D007157 ORTHO05D009045 3.4e-34 148.7 128 56.2
arahy.Tifrunner.gnm1.ann1.VP4GDR Arachis hypogaea HOM05D007157 ORTHO05D009045 7.5e-34 147.5 133 54.9
A10p24350 Brassica napus HOM05D007157 ORTHO05D009045 9.8e-34 147.1 128 57.0
Aa31LG11G14870 Aethionema arabicum HOM05D007157 ORTHO05D009045 1.3e-33 146.7 131 56.5
C09p63050 Brassica napus HOM05D007157 ORTHO05D009045 1.7e-33 146.4 128 56.2
ATR0012G053 Amborella trichopoda HOM05D007157 ORTHO05D009045 2.8e-33 145.6 132 53.0
CARHR199280 Cardamine hirsuta HOM05D007157 ORTHO05D009045 2.8e-33 145.6 131 55.0
BolC9t59142H Brassica oleracea HOM05D007157 ORTHO05D009045 3.7e-33 145.2 128 54.7
BraA10t44501Z Brassica rapa HOM05D007157 ORTHO05D009045 3.7e-33 145.2 128 56.2
Medtr7g027940 Medicago truncatula HOM05D007157 ORTHO05D009045 4.9e-33 144.8 135 54.1
arahy.Tifrunner.gnm1.ann1.LR7EIQ Arachis hypogaea HOM05D007157 ORTHO05D009045 6.3e-33 144.4 133 54.9
Carub.0006s1227 Capsella rubella HOM05D007157 ORTHO05D009045 6.3e-33 144.4 131 54.2
Psat3g167400 Pisum sativum HOM05D007157 ORTHO05D009045 6.3e-33 144.4 135 51.1
Thhalv10012953m.g Eutrema salsugineum HOM05D007157 ORTHO05D009045 1.4e-32 143.3 128 55.5
AL6G24740 Arabidopsis lyrata HOM05D007157 ORTHO05D009045 1.8e-32 142.9 131 53.4
Ciclev10014547m.g Citrus clementina HOM05D007157 ORTHO05D009045 1.8e-32 142.9 131 58.0
THA.LOC104802372 Tarenaya hassleriana HOM05D007157 ORTHO05D009045 1.8e-32 142.9 131 55.7
TPR.G29476 Trifolium pratense HOM05D007157 ORTHO05D009045 2.4e-32 142.5 131 52.7
TPR.G8553 Trifolium pratense HOM05D007157 ORTHO05D009045 2.4e-32 142.5 135 51.9
Zm00001eb093300 Zea mays HOM05D007157 ORTHO05D009045 7.0e-32 141.0 134 50.7
CDE01G0454 Ceratophyllum demersum HOM05D007157 ORTHO05D009045 3.5e-31 138.7 132 50.8
AT5G14080 Arabidopsis thaliana HOM05D007157 ORTHO05D009045 2.3e-30 136.0 131 50.4
SHI04033 Sapria himalayana HOM05D007157 ORTHO05D009045 3.8e-30 135.2 129 55.8
Ca_12649_v3 Cicer arietinum L. HOM05D007157 ORTHO05D009045 8.6e-30 134.0 121 55.4
Glyma.19G095500 Glycine max HOM05D007157 ORTHO05D009045 2.3e-27 125.9 140 46.4
TAR375G0551 Trochodendron aralioides HOM05D007157 ORTHO05D009045 8.9e-27 124.0 101 59.4
Cc00_g20250 Coffea canephora HOM05D007157 ORTHO05D009045 1.5e-26 123.2 86 66.3
HPP92_009778 Vanilla planifolia HOM05D007157 ORTHO05D009045 9.8e-26 120.6 134 46.3
Nn5g29238 Nelumbo nucifera HOM05D007157 ORTHO05D009045 1.4e-24 116.7 92 62.0
FAN09G1568 Fragaria x ananassa HOM05D007157 ORTHO05D009045 1.7e-22 109.8 76 69.7
BcaC02g07725 Brassica carinata HOM05D007157 ORTHO05D009045 3.9e-22 108.6 129 47.3
BolC4t27904H Brassica oleracea HOM05D007157 ORTHO05D009045 2.5e-13 79.3 129 38.0
FAN09G1907 Fragaria x ananassa HOM05D007157 ORTHO05D009045 6.8e-11 71.2 54 64.8
TPR.G29386 Trifolium pratense HOM05D007157 ORTHO05D009045 2.1e-07 59.7 59 45.8
BcaC04g21373 Brassica carinata HOM05D007157 ORTHO05D009045 7.8e-07 57.8 52 51.9
Hund04273 Selenicereus undatus HOM05D007157 ORTHO05D009045 2.3e-06 56.2 46 58.7


User provided reference genes

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