Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8P532T12 Lonicera japonica HOM05D000123 ORTHO05D000064 2.2e-106 389.0 205 100.0
Lj8P532T11 Lonicera japonica HOM05D000123 ORTHO05D000064 7.8e-88 327.4 197 88.8
Lj8P532T10 Lonicera japonica HOM05D000123 ORTHO05D000064 9.3e-81 303.9 194 82.5
Lj8P531T41 Lonicera japonica HOM05D000123 ORTHO05D000064 2.2e-74 282.7 197 78.7
Lj8C533G1 Lonicera japonica HOM05D000123 ORTHO05D000064 3.8e-74 282.0 198 78.8
Lj8C533T0 Lonicera japonica HOM05D000123 ORTHO05D000064 1.1e-33 147.5 160 55.6
Potri.006G226800 Populus trichocarpa HOM05D000123 ORTHO05D000064 2.0e-30 136.7 208 39.4
CSS0014079 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 3.3e-30 136.0 205 40.0
Sabra06G0175500 Salix brachista HOM05D000123 ORTHO05D000064 8.2e-29 131.3 208 38.9
CAN.G20.1 Capsicum annuum HOM05D000123 ORTHO05D000064 1.4e-28 130.6 206 39.3
Nitab4.5_0006852g0070 Nicotiana tabacum HOM05D000123 ORTHO05D000064 2.0e-27 126.7 205 38.0
Thecc.09G056300 Theobroma cacao HOM05D000123 ORTHO05D000064 3.2e-25 119.4 207 38.2
Duzib168G0691 Durio zibethinus HOM05D000123 ORTHO05D000064 4.2e-25 119.0 202 39.6
COL.COLO4_21078 Corchorus olitorius HOM05D000123 ORTHO05D000064 1.6e-24 117.1 208 37.0
Haze_18164 Corylus avellana HOM05D000123 ORTHO05D000064 2.1e-24 116.7 207 35.7
Duzib187G0851 Durio zibethinus HOM05D000123 ORTHO05D000064 2.1e-24 116.7 203 37.9
QL02p000947 Quercus lobata HOM05D000123 ORTHO05D000064 3.6e-24 115.9 205 36.6
Cfa017967 Carpinus fangiana HOM05D000123 ORTHO05D000064 6.1e-24 115.2 207 36.7
Gorai.013G220400 Gossypium raimondii HOM05D000123 ORTHO05D000064 8.0e-24 114.8 216 37.5
Cc08_g10810 Coffea canephora HOM05D000123 ORTHO05D000064 1.0e-23 114.4 195 36.9
Hma1.2p1_0544F.1_g175700 Hydrangea macrophylla HOM05D000123 ORTHO05D000064 1.4e-23 114.0 208 41.3
CiPaw.15G037500 Carya illinoinensis HOM05D000123 ORTHO05D000064 2.3e-23 113.2 193 38.9
Gohir.D13G194400 Gossypium hirsutum HOM05D000123 ORTHO05D000064 4.0e-23 112.5 207 37.2
Gohir.A13G187500 Gossypium hirsutum HOM05D000123 ORTHO05D000064 1.5e-22 110.5 208 37.5
Peaxi162Scf00327g00413 Petunia axillaris HOM05D000123 ORTHO05D000064 1.5e-22 110.5 201 36.3
SGA_v2.0_scaffold169G38699 Striga asiatica HOM05D000123 ORTHO05D000064 7.5e-22 108.2 195 37.4
Oeu036327.2 Olea europaea HOM05D000123 ORTHO05D000064 1.3e-21 107.5 189 37.6
Ciclev10008617m.g Citrus clementina HOM05D000123 ORTHO05D000064 2.2e-21 106.7 208 34.6
Rhsim11G0043100 Rhododendron simsii HOM05D000123 ORTHO05D000064 2.2e-21 106.7 211 34.6
vmacro00130 Vaccinium macrocarpon HOM05D000123 ORTHO05D000064 6.3e-21 105.1 210 33.3
Manes.03G049500 Manihot esculenta HOM05D000123 ORTHO05D000064 4.1e-20 102.4 209 35.9
Prupe.1G410400 Prunus persica HOM05D000123 ORTHO05D000064 4.1e-20 102.4 209 34.4
Eucgr.C03056 Eucalyptus grandis HOM05D000123 ORTHO05D000064 5.4e-20 102.1 205 37.1
Dinv22884 Davidia involucrata HOM05D000123 ORTHO05D000064 7.0e-20 101.7 199 39.7
MD08G1064100 Malus domestica HOM05D000123 ORTHO05D000064 7.0e-20 101.7 210 35.2
DCAR_004405 Daucus carota HOM05D000123 ORTHO05D000064 9.1e-20 101.3 187 38.5
Lj1g0019749 Lotus japonicus HOM05D000123 ORTHO05D000064 1.6e-19 100.5 209 32.1
Eucgr.C00664 Eucalyptus grandis HOM05D000123 ORTHO05D000064 3.5e-19 99.4 187 37.4
FvH4_2g31690 Fragaria vesca HOM05D000123 ORTHO05D000064 4.5e-19 99.0 207 34.8
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 5.9e-19 98.6 206 35.4
Sopen08g018510 Solanum pennellii HOM05D000123 ORTHO05D000064 1.0e-18 97.8 211 35.1
TPR.G3565 Trifolium pratense HOM05D000123 ORTHO05D000064 1.7e-18 97.1 207 35.7
TAR383G0684 Trochodendron aralioides HOM05D000123 ORTHO05D000064 1.7e-18 97.1 209 33.0
Hma1.2p1_0544F.1_g175690 Hydrangea macrophylla HOM05D000123 ORTHO05D000064 2.9e-18 96.3 209 36.4
FAN15G2073 Fragaria x ananassa HOM05D000123 ORTHO05D000064 5.0e-18 95.5 207 33.8
Lalb_Chr08g0245011 Lupinus albus HOM05D000123 ORTHO05D000064 5.0e-18 95.5 211 34.1
Medtr3g104550 Medicago truncatula HOM05D000123 ORTHO05D000064 5.0e-18 95.5 206 35.0
RcHm_v2.0_Chr6g0311151 Rosa chinensis HOM05D000123 ORTHO05D000064 6.5e-18 95.1 206 34.5
TWI63G1398 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 6.5e-18 95.1 194 34.5
FAN27G2195 Fragaria x ananassa HOM05D000123 ORTHO05D000064 1.1e-17 94.4 207 33.3
Sed0025709 Sechium edule HOM05D000123 ORTHO05D000064 1.5e-17 94.0 208 32.2
Oeu013997.1 Olea europaea HOM05D000123 ORTHO05D000064 2.5e-17 93.2 163 39.9
Ah.10g034180 Amaranthus hybridus HOM05D000123 ORTHO05D000064 4.2e-17 92.4 198 30.8
Glyma.04G052000 Glycine max HOM05D000123 ORTHO05D000064 5.5e-17 92.0 213 32.9
arahy.Tifrunner.gnm1.ann1.GW3WU5 Arachis hypogaea HOM05D000123 ORTHO05D000064 9.5e-17 91.3 203 33.5
ECA240G4351 Erigeron canadensis HOM05D000123 ORTHO05D000064 9.5e-17 91.3 195 33.8
arahy.Tifrunner.gnm1.ann1.5FT298 Arachis hypogaea HOM05D000123 ORTHO05D000064 1.6e-16 90.5 203 34.0
AUR62009126 Chenopodium quinoa HOM05D000123 ORTHO05D000064 1.6e-16 90.5 207 33.8
HanXRQChr13g0409921 Helianthus annuus HOM05D000123 ORTHO05D000064 2.1e-16 90.1 197 33.5
Solyc08g062960.4 Solanum lycopersicum HOM05D000123 ORTHO05D000064 2.1e-16 90.1 197 35.0
PGSC0003DMG400008223 Solanum tuberosum HOM05D000123 ORTHO05D000064 2.8e-16 89.7 183 37.2
AUR62039129 Chenopodium quinoa HOM05D000123 ORTHO05D000064 4.7e-16 89.0 211 34.1
PGR044G1506 Punica granatum HOM05D000123 ORTHO05D000064 4.7e-16 89.0 213 31.9
MD15G1057700 Malus domestica HOM05D000123 ORTHO05D000064 1.0e-15 87.8 209 32.1
TAR624G0010 Trochodendron aralioides HOM05D000123 ORTHO05D000064 1.0e-15 87.8 207 30.9
CsaV3_2G025510 Cucumis sativus L. HOM05D000123 ORTHO05D000064 1.8e-15 87.0 209 34.4
VMungo1309G3165 Vigna mungo HOM05D000123 ORTHO05D000064 1.8e-15 87.0 210 35.2
Glyma.14G096800 Glycine max HOM05D000123 ORTHO05D000064 2.3e-15 86.7 200 33.5
Psat5g036400 Pisum sativum HOM05D000123 ORTHO05D000064 3.0e-15 86.3 205 34.6
Lalb_Chr23g0267811 Lupinus albus HOM05D000123 ORTHO05D000064 4.0e-15 85.9 203 31.5
Oeu018633.1 Olea europaea HOM05D000123 ORTHO05D000064 5.2e-15 85.5 192 31.8
Lj7C265T7 Lonicera japonica HOM05D000123 ORTHO05D000064 6.8e-15 85.1 134 40.3
QL11p022570 Quercus lobata HOM05D000123 ORTHO05D000064 2.0e-14 83.6 204 31.4
MELO3C010748.2 Cucumis melo HOM05D000123 ORTHO05D000064 4.4e-14 82.4 209 33.5
MBI01_g20343_MAGBIO Magnolia biondii HOM05D000123 ORTHO05D000064 4.4e-14 82.4 210 30.0
ClCG08G017080 Citrullus lanatus HOM05D000123 ORTHO05D000064 1.3e-13 80.9 204 31.9
Ca_15824_v3 Cicer arietinum L. HOM05D000123 ORTHO05D000064 2.2e-13 80.1 192 31.8
Ca_15858_v3 Cicer arietinum L. HOM05D000123 ORTHO05D000064 2.2e-13 80.1 192 31.8
Lsat_1_v5_gn_5_48320 Lactuca sativa HOM05D000123 ORTHO05D000064 3.7e-13 79.3 195 32.8
Phvul.009G078300 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 4.9e-13 79.0 217 33.2
Glyma.17G227600 Glycine max HOM05D000123 ORTHO05D000064 1.4e-12 77.4 198 29.3
HanXRQChr03g0079851 Helianthus annuus HOM05D000123 ORTHO05D000064 1.4e-12 77.4 85 50.6
Nn6g35512 Nelumbo nucifera HOM05D000123 ORTHO05D000064 2.4e-12 76.6 210 31.4
Cpa.g.sc7.163 Carica papaya HOM05D000123 ORTHO05D000064 3.1e-12 76.3 202 32.2
arahy.Tifrunner.gnm1.ann1.ABBA5Z Arachis hypogaea HOM05D000123 ORTHO05D000064 7.0e-12 75.1 208 31.7
Migut.E01778 Erythranthe guttata HOM05D000123 ORTHO05D000064 7.0e-12 75.1 198 33.3
Hund19443 Selenicereus undatus HOM05D000123 ORTHO05D000064 1.2e-11 74.3 205 33.7
TAR636G3522 Trochodendron aralioides HOM05D000123 ORTHO05D000064 3.5e-11 72.8 208 29.8
Hund03328 Selenicereus undatus HOM05D000123 ORTHO05D000064 7.8e-11 71.6 207 29.0
EL10Ac2g03834 Beta vulgaris HOM05D000123 ORTHO05D000064 1.0e-10 71.2 187 33.7
QL04p071344 Quercus lobata HOM05D003037 ORTHO05D000064 1.3e-10 70.9 208 28.8
Atru.chr7.1099 Acer truncatum HOM05D000123 ORTHO05D000064 1.7e-10 70.5 108 38.9
Hma1.2p1_0672F.1_g201060 Hydrangea macrophylla HOM05D000123 ORTHO05D000064 1.7e-10 70.5 218 29.4
Phvul.001G037000 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 2.9e-10 69.7 210 30.5
ATR0789G011 Amborella trichopoda HOM05D000123 ORTHO05D000064 6.6e-10 68.6 206 30.1
Sp4g06150 Schrenkiella parvula HOM05D000123 ORTHO05D000064 6.6e-10 68.6 199 29.6
BcaB01g03014 Brassica carinata HOM05D000123 ORTHO05D000064 8.6e-10 68.2 198 29.8
BcaC01g04897 Brassica carinata HOM05D000123 ORTHO05D000064 8.6e-10 68.2 198 28.8
C03p32530 Brassica napus HOM05D000123 ORTHO05D000064 8.6e-10 68.2 198 28.8
BolC3t15592H Brassica oleracea HOM05D000123 ORTHO05D000064 1.5e-09 67.4 198 28.8
Manes.16G081500 Manihot esculenta HOM05D000123 ORTHO05D000064 1.5e-09 67.4 124 35.5
Sc09g0009910 Simmondsia chinensis HOM05D000123 ORTHO05D000064 1.5e-09 67.4 200 29.5
Carub.0004s0601 Capsella rubella HOM05D000123 ORTHO05D000064 4.3e-09 65.9 199 28.6
Aqoxy7G01183 Aquilegia oxysepala HOM05D000123 ORTHO05D000064 1.2e-08 64.3 196 31.6
BraA03t11922Z Brassica rapa HOM05D000123 ORTHO05D000064 1.2e-08 64.3 198 28.3
Aqoxy7G04026 Aquilegia oxysepala HOM05D000123 ORTHO05D000064 1.6e-08 63.9 214 28.0
A03p27090 Brassica napus HOM05D000123 ORTHO05D000064 1.6e-08 63.9 198 28.8
GSVIVG01035385001 Vitis vinifera HOM05D000123 ORTHO05D000064 1.6e-08 63.9 209 26.3
VMungo0647G1274 Vigna mungo HOM05D000123 ORTHO05D000064 3.6e-08 62.8 191 30.9
arahy.Tifrunner.gnm1.ann1.FJH25Q Arachis hypogaea HOM05D000123 ORTHO05D000064 1.4e-07 60.8 208 29.3
Duzib212G0452 Durio zibethinus HOM05D000123 ORTHO05D000064 8.9e-07 58.2 206 31.6
CSS0017445 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 1.2e-06 57.8 177 29.4
Glyma.10G244000 Glycine max HOM05D000123 ORTHO05D000064 2.0e-06 57.0 189 29.1
Medtr1g102860 Medicago truncatula HOM05D000123 ORTHO05D000064 2.0e-06 57.0 175 29.7
PSO063G0319 Papaver somniferum HOM05D000123 ORTHO05D000064 2.0e-06 57.0 208 26.4
Sc19g0003950 Simmondsia chinensis HOM05D000123 ORTHO05D000064 4.4e-06 55.8 179 30.2
Thhalv10020829m.g Eutrema salsugineum HOM05D000123 ORTHO05D000064 5.7e-06 55.5 206 30.1
vmacro08370 Vaccinium macrocarpon HOM05D000123 ORTHO05D000064 5.7e-06 55.5 74 45.9
Dinv36780 Davidia involucrata HOM05D001723 ORTHO05D001706 7.5e-06 55.1 195 27.2


User provided reference genes

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