Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8P531T41 Lonicera japonica HOM05D000123 ORTHO05D000064 8.3e-103 377.1 198 100.0
Lj8P532T10 Lonicera japonica HOM05D000123 ORTHO05D000064 7.8e-85 317.4 200 84.0
Lj8P532T11 Lonicera japonica HOM05D000123 ORTHO05D000064 1.2e-80 303.5 199 80.9
Lj8C533G1 Lonicera japonica HOM05D000123 ORTHO05D000064 5.4e-78 294.7 201 81.1
Lj8P532T12 Lonicera japonica HOM05D000123 ORTHO05D000064 4.8e-74 281.6 197 78.7
Potri.006G226800 Populus trichocarpa HOM05D000123 ORTHO05D000064 2.0e-35 153.3 211 43.6
Lj8C533T0 Lonicera japonica HOM05D000123 ORTHO05D000064 5.7e-35 151.8 160 56.9
COL.COLO4_21078 Corchorus olitorius HOM05D000123 ORTHO05D000064 1.4e-33 147.1 211 44.1
Sabra06G0175500 Salix brachista HOM05D000123 ORTHO05D000064 2.4e-33 146.4 211 44.1
Duzib187G0851 Durio zibethinus HOM05D000123 ORTHO05D000064 5.3e-33 145.2 205 44.9
Thecc.09G056300 Theobroma cacao HOM05D000123 ORTHO05D000064 1.2e-32 144.1 207 45.9
CAN.G20.1 Capsicum annuum HOM05D000123 ORTHO05D000064 2.6e-32 142.9 206 40.8
CSS0014079 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 3.5e-32 142.5 205 42.0
QL02p000947 Quercus lobata HOM05D000123 ORTHO05D000064 5.9e-32 141.7 208 42.3
Nitab4.5_0006852g0070 Nicotiana tabacum HOM05D000123 ORTHO05D000064 1.7e-31 140.2 205 40.5
Duzib168G0691 Durio zibethinus HOM05D000123 ORTHO05D000064 3.8e-31 139.0 202 46.0
Gohir.A13G187500 Gossypium hirsutum HOM05D000123 ORTHO05D000064 1.9e-30 136.7 207 44.9
CiPaw.15G037500 Carya illinoinensis HOM05D000123 ORTHO05D000064 2.5e-30 136.3 193 43.5
Gohir.D13G194400 Gossypium hirsutum HOM05D000123 ORTHO05D000064 2.5e-30 136.3 207 44.9
Haze_18164 Corylus avellana HOM05D000123 ORTHO05D000064 3.2e-30 136.0 207 41.1
Gorai.013G220400 Gossypium raimondii HOM05D000123 ORTHO05D000064 4.2e-30 135.6 207 44.4
Oeu036327.2 Olea europaea HOM05D000123 ORTHO05D000064 1.2e-29 134.0 192 44.8
Cfa017967 Carpinus fangiana HOM05D000123 ORTHO05D000064 1.6e-29 133.7 207 42.0
Lj1g0019749 Lotus japonicus HOM05D000123 ORTHO05D000064 1.8e-28 130.2 212 38.7
SGA_v2.0_scaffold169G38699 Striga asiatica HOM05D000123 ORTHO05D000064 5.2e-28 128.6 193 39.9
Cc08_g10810 Coffea canephora HOM05D000123 ORTHO05D000064 2.0e-27 126.7 201 40.3
Manes.03G049500 Manihot esculenta HOM05D000123 ORTHO05D000064 2.6e-27 126.3 212 40.6
Prupe.1G410400 Prunus persica HOM05D000123 ORTHO05D000064 2.6e-27 126.3 213 40.4
FvH4_2g31690 Fragaria vesca HOM05D000123 ORTHO05D000064 1.7e-26 123.6 207 40.6
Ciclev10008617m.g Citrus clementina HOM05D000123 ORTHO05D000064 2.2e-26 123.2 208 38.5
Hma1.2p1_0544F.1_g175700 Hydrangea macrophylla HOM05D000123 ORTHO05D000064 2.2e-26 123.2 211 42.7
Oeu013997.1 Olea europaea HOM05D000123 ORTHO05D000064 2.8e-26 122.9 179 44.1
FAN15G2073 Fragaria x ananassa HOM05D000123 ORTHO05D000064 6.3e-26 121.7 207 40.6
FAN27G2195 Fragaria x ananassa HOM05D000123 ORTHO05D000064 1.4e-25 120.6 207 40.1
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 1.8e-25 120.2 207 39.1
Peaxi162Scf00327g00413 Petunia axillaris HOM05D000123 ORTHO05D000064 1.8e-25 120.2 187 40.1
Eucgr.C03056 Eucalyptus grandis HOM05D000123 ORTHO05D000064 4.1e-25 119.0 208 39.9
Rhsim11G0043100 Rhododendron simsii HOM05D000123 ORTHO05D000064 5.3e-25 118.6 213 38.5
Hma1.2p1_0544F.1_g175690 Hydrangea macrophylla HOM05D000123 ORTHO05D000064 1.2e-24 117.5 212 39.6
Eucgr.C00664 Eucalyptus grandis HOM05D000123 ORTHO05D000064 1.6e-24 117.1 192 42.7
RcHm_v2.0_Chr6g0311151 Rosa chinensis HOM05D000123 ORTHO05D000064 2.0e-24 116.7 206 38.8
Dinv22884 Davidia involucrata HOM05D000123 ORTHO05D000064 7.7e-24 114.8 201 40.8
MD08G1064100 Malus domestica HOM05D000123 ORTHO05D000064 1.0e-23 114.4 209 37.3
ECA240G4351 Erigeron canadensis HOM05D000123 ORTHO05D000064 1.7e-23 113.6 194 42.3
vmacro00130 Vaccinium macrocarpon HOM05D000123 ORTHO05D000064 2.2e-23 113.2 216 36.1
AUR62009126 Chenopodium quinoa HOM05D000123 ORTHO05D000064 2.9e-23 112.8 210 39.5
Glyma.04G052000 Glycine max HOM05D000123 ORTHO05D000064 3.8e-23 112.5 214 36.0
AUR62039129 Chenopodium quinoa HOM05D000123 ORTHO05D000064 6.5e-23 111.7 210 38.6
arahy.Tifrunner.gnm1.ann1.GW3WU5 Arachis hypogaea HOM05D000123 ORTHO05D000064 1.1e-22 110.9 210 36.7
arahy.Tifrunner.gnm1.ann1.5FT298 Arachis hypogaea HOM05D000123 ORTHO05D000064 2.5e-22 109.8 210 36.2
DCAR_004405 Daucus carota HOM05D000123 ORTHO05D000064 2.5e-22 109.8 188 41.0
HanXRQChr13g0409921 Helianthus annuus HOM05D000123 ORTHO05D000064 2.5e-22 109.8 196 38.3
MD15G1057700 Malus domestica HOM05D000123 ORTHO05D000064 2.5e-22 109.8 209 37.8
TAR383G0684 Trochodendron aralioides HOM05D000123 ORTHO05D000064 2.5e-22 109.8 210 37.1
Sed0025709 Sechium edule HOM05D000123 ORTHO05D000064 4.2e-22 109.0 211 35.5
ClCG08G017080 Citrullus lanatus HOM05D000123 ORTHO05D000064 1.2e-21 107.5 211 37.9
PGR044G1506 Punica granatum HOM05D000123 ORTHO05D000064 1.2e-21 107.5 216 35.6
Cpa.g.sc7.163 Carica papaya HOM05D000123 ORTHO05D000064 1.6e-21 107.1 209 37.8
Ah.10g034180 Amaranthus hybridus HOM05D000123 ORTHO05D000064 2.1e-21 106.7 199 35.7
Lalb_Chr08g0245011 Lupinus albus HOM05D000123 ORTHO05D000064 2.1e-21 106.7 211 36.0
TWI63G1398 Tripterygium wilfordii HOM05D000123 ORTHO05D000064 6.1e-21 105.1 194 38.7
MELO3C010748.2 Cucumis melo HOM05D000123 ORTHO05D000064 8.0e-21 104.8 212 38.7
Phvul.009G078300 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 1.8e-20 103.6 217 36.9
QL11p022570 Quercus lobata HOM05D000123 ORTHO05D000064 1.8e-20 103.6 207 35.3
CsaV3_2G025510 Cucumis sativus L. HOM05D000123 ORTHO05D000064 2.3e-20 103.2 212 38.2
Sopen08g018510 Solanum pennellii HOM05D000123 ORTHO05D000064 2.3e-20 103.2 189 37.6
Hund19443 Selenicereus undatus HOM05D000123 ORTHO05D000064 3.0e-20 102.8 210 39.5
Solyc08g062960.4 Solanum lycopersicum HOM05D000123 ORTHO05D000064 5.2e-20 102.1 192 36.5
Migut.E01778 Erythranthe guttata HOM05D000123 ORTHO05D000064 6.8e-20 101.7 202 35.6
Glyma.14G096800 Glycine max HOM05D000123 ORTHO05D000064 6.8e-20 101.7 202 36.6
VMungo1309G3165 Vigna mungo HOM05D000123 ORTHO05D000064 1.2e-19 100.9 209 36.8
TAR624G0010 Trochodendron aralioides HOM05D000123 ORTHO05D000064 2.6e-19 99.8 207 33.3
Lalb_Chr23g0267811 Lupinus albus HOM05D000123 ORTHO05D000064 4.4e-19 99.0 212 34.4
Lj7C265T7 Lonicera japonica HOM05D000123 ORTHO05D000064 9.8e-19 97.8 117 44.4
PGSC0003DMG400008223 Solanum tuberosum HOM05D000123 ORTHO05D000064 1.3e-18 97.4 183 38.8
TPR.G3565 Trifolium pratense HOM05D000123 ORTHO05D000064 1.7e-18 97.1 207 34.8
MBI01_g20343_MAGBIO Magnolia biondii HOM05D000123 ORTHO05D000064 2.2e-18 96.7 213 34.3
Medtr3g104550 Medicago truncatula HOM05D000123 ORTHO05D000064 2.2e-18 96.7 205 36.1
Glyma.17G227600 Glycine max HOM05D000123 ORTHO05D000064 4.8e-18 95.5 203 34.5
Lsat_1_v5_gn_5_48320 Lactuca sativa HOM05D000123 ORTHO05D000064 4.8e-18 95.5 193 35.2
QL04p071344 Quercus lobata HOM05D003037 ORTHO05D000064 4.8e-18 95.5 210 34.3
HanXRQChr03g0079851 Helianthus annuus HOM05D000123 ORTHO05D000064 8.3e-18 94.7 85 57.6
arahy.Tifrunner.gnm1.ann1.ABBA5Z Arachis hypogaea HOM05D000123 ORTHO05D000064 2.4e-17 93.2 210 35.7
Oeu018633.1 Olea europaea HOM05D000123 ORTHO05D000064 3.1e-17 92.8 190 35.3
Phvul.001G037000 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 5.4e-17 92.0 212 35.4
Nn6g35512 Nelumbo nucifera HOM05D000123 ORTHO05D000064 2.7e-16 89.7 208 33.2
Hund03328 Selenicereus undatus HOM05D000123 ORTHO05D000064 4.5e-16 89.0 200 34.0
EL10Ac2g03834 Beta vulgaris HOM05D000123 ORTHO05D000064 5.9e-16 88.6 188 38.8
Ca_15824_v3 Cicer arietinum L. HOM05D000123 ORTHO05D000064 1.0e-15 87.8 192 34.9
Ca_15858_v3 Cicer arietinum L. HOM05D000123 ORTHO05D000064 1.0e-15 87.8 192 34.9
TAR636G3522 Trochodendron aralioides HOM05D000123 ORTHO05D000064 1.0e-15 87.8 211 32.2
Psat5g036400 Pisum sativum HOM05D000123 ORTHO05D000064 1.7e-15 87.0 205 34.6
Manes.16G081500 Manihot esculenta HOM05D000123 ORTHO05D000064 5.0e-15 85.5 124 40.3
Atru.chr7.1099 Acer truncatum HOM05D000123 ORTHO05D000064 3.2e-14 82.8 108 42.6
Sc09g0009910 Simmondsia chinensis HOM05D000123 ORTHO05D000064 4.2e-14 82.4 195 32.3
BcaB01g03014 Brassica carinata HOM05D000123 ORTHO05D000064 5.5e-14 82.0 199 33.2
BcaC01g04897 Brassica carinata HOM05D000123 ORTHO05D000064 7.2e-14 81.6 199 33.2
C03p32530 Brassica napus HOM05D000123 ORTHO05D000064 7.2e-14 81.6 199 33.2
BolC3t15592H Brassica oleracea HOM05D000123 ORTHO05D000064 1.2e-13 80.9 199 33.2
arahy.Tifrunner.gnm1.ann1.FJH25Q Arachis hypogaea HOM05D000123 ORTHO05D000064 1.6e-13 80.5 209 33.5
VMungo0647G1274 Vigna mungo HOM05D000123 ORTHO05D000064 3.6e-13 79.3 203 34.5
A03p27090 Brassica napus HOM05D000123 ORTHO05D000064 4.7e-13 79.0 199 32.2
GSVIVG01035385001 Vitis vinifera HOM05D000123 ORTHO05D000064 4.7e-13 79.0 209 30.1
ATR0789G011 Amborella trichopoda HOM05D000123 ORTHO05D000064 6.1e-13 78.6 212 32.1
Sp4g06150 Schrenkiella parvula HOM05D000123 ORTHO05D000064 6.1e-13 78.6 200 33.5
BraA03t11922Z Brassica rapa HOM05D000123 ORTHO05D000064 1.0e-12 77.8 199 32.7
PSO063G0319 Papaver somniferum HOM05D000123 ORTHO05D000064 1.0e-12 77.8 214 30.4
Carub.0004s0601 Capsella rubella HOM05D000123 ORTHO05D000064 4.0e-12 75.9 200 31.5
CARHR114930 Cardamine hirsuta HOM05D000123 ORTHO05D000064 5.2e-12 75.5 204 31.4
DCAR_000803 Daucus carota HOM05D000123 ORTHO05D000064 1.2e-11 74.3 186 33.3
PSO832G3544 Papaver somniferum HOM05D000123 ORTHO05D000064 3.4e-11 72.8 214 30.8
Aqoxy7G01183 Aquilegia oxysepala HOM05D000123 ORTHO05D000064 4.4e-11 72.4 191 32.5
Hma1.2p1_0672F.1_g201060 Hydrangea macrophylla HOM05D000123 ORTHO05D000064 5.7e-11 72.0 195 27.2
Aqoxy7G04026 Aquilegia oxysepala HOM05D000123 ORTHO05D000064 6.3e-10 68.6 211 29.4
vmacro17258 Vaccinium macrocarpon HOM05D000123 ORTHO05D000064 1.8e-09 67.0 194 32.5
Rhsim05G0018200 Rhododendron simsii HOM05D000123 ORTHO05D000064 2.4e-09 66.6 207 27.1
Os07g0178600 Oryza sativa ssp. japonica HOM05D000123 ORTHO05D000064 5.4e-09 65.5 199 27.1
Glyma.10G244000 Glycine max HOM05D000123 ORTHO05D000064 1.6e-08 63.9 183 30.6
HPP92_003979 Vanilla planifolia HOM05D000123 ORTHO05D000064 1.6e-08 63.9 199 29.6
PGR031G0926 Punica granatum HOM05D000123 ORTHO05D000064 2.0e-08 63.5 204 28.9
VMungo1383G1049 Vigna mungo HOM05D000123 ORTHO05D000064 5.9e-08 62.0 210 28.6
Cpa.g.sc44.122 Carica papaya HOM05D000123 ORTHO05D000064 1.0e-07 61.2 202 26.2
PSO210G3726 Papaver somniferum HOM05D000123 ORTHO05D000064 1.0e-07 61.2 125 35.2
CAN.G1437.7 Capsicum annuum HOM05D000123 ORTHO05D000064 1.7e-07 60.5 208 29.8
Duzib212G0452 Durio zibethinus HOM05D000123 ORTHO05D000064 1.7e-07 60.5 208 30.8
Peaxi162Scf00221g00015 Petunia axillaris HOM05D000123 ORTHO05D000064 1.7e-07 60.5 188 27.7
Medtr1g102860 Medicago truncatula HOM05D000123 ORTHO05D000064 2.3e-07 60.1 172 27.3
Nn1g02456 Nelumbo nucifera HOM05D000123 ORTHO05D000064 2.3e-07 60.1 205 28.3
PSO210G3934 Papaver somniferum HOM05D000123 ORTHO05D000064 2.9e-07 59.7 125 34.4
CSS0017445 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 3.8e-07 59.3 171 30.4
Haze_04643 Corylus avellana HOM05D000123 ORTHO05D000064 3.8e-07 59.3 162 32.7
Nitab4.5_0000090g0270 Nicotiana tabacum HOM05D000123 ORTHO05D000064 3.8e-07 59.3 104 32.7
CDE05G0676 Ceratophyllum demersum HOM05D000123 ORTHO05D000064 5.0e-07 58.9 195 29.7
Lsat_1_v5_gn_9_7580 Lactuca sativa HOM05D000123 ORTHO05D000064 6.6e-07 58.5 160 33.1
COL.COLO4_21564 Corchorus olitorius HOM05D000123 ORTHO05D000064 8.6e-07 58.2 213 31.0
Lj5g0000020 Lotus japonicus HOM05D000123 ORTHO05D000064 8.6e-07 58.2 180 32.8
Phvul.001G154700 Phaseolus vulgaris HOM05D000123 ORTHO05D000064 8.6e-07 58.2 209 29.2
MSTRG.9949 Avicennia marina HOM05D000123 ORTHO05D000064 1.1e-06 57.8 211 27.5
Thhalv10006463m.g Eutrema salsugineum HOM05D000123 ORTHO05D000064 1.1e-06 57.8 114 34.2
PGSC0003DMG400032793 Solanum tuberosum HOM05D000123 ORTHO05D000064 1.1e-06 57.8 183 28.4
CsaV3_3G012910 Cucumis sativus L. HOM05D000123 ORTHO05D000064 1.5e-06 57.4 170 30.0
Manes.03G173200 Manihot esculenta HOM05D000123 ORTHO05D000064 1.5e-06 57.4 204 27.5
THA.LOC104803048 Tarenaya hassleriana HOM05D000123 ORTHO05D000064 1.5e-06 57.4 200 27.0
vmacro08370 Vaccinium macrocarpon HOM05D000123 ORTHO05D000064 1.5e-06 57.4 74 43.2
Aqoxy5G00401 Aquilegia oxysepala HOM05D000123 ORTHO05D000064 1.9e-06 57.0 169 29.6
Eucgr.K03325 Eucalyptus grandis HOM05D000123 ORTHO05D000064 1.9e-06 57.0 214 30.8
Nitab4.5_0001917g0020 Nicotiana tabacum HOM05D000123 ORTHO05D000064 1.9e-06 57.0 206 26.7
Thecc.04G238500 Theobroma cacao HOM05D000123 ORTHO05D000064 1.9e-06 57.0 201 31.3
Zm00001eb301280 Zea mays HOM05D000123 ORTHO05D000064 2.5e-06 56.6 201 26.9
AT3G51910 Arabidopsis thaliana HOM05D000123 ORTHO05D000064 4.3e-06 55.8 114 34.2
Dinv44575 Davidia involucrata HOM05D000123 ORTHO05D000064 4.3e-06 55.8 84 38.1
Zm00001eb047760 Zea mays HOM05D000123 ORTHO05D000064 4.3e-06 55.8 177 29.4
MD13G1199700 Malus domestica HOM05D000123 ORTHO05D000064 5.6e-06 55.5 169 29.0
QL06p000987 Quercus lobata HOM05D000123 ORTHO05D000064 5.6e-06 55.5 99 36.4
arahy.Tifrunner.gnm1.ann1.7Z43AK Arachis hypogaea HOM05D000123 ORTHO05D000064 7.3e-06 55.1 116 33.6
MSTRG.24725 Avicennia marina HOM05D000123 ORTHO05D000064 7.3e-06 55.1 84 42.9
CSS0030507 Camellia sinensis var. sinensis HOM05D000123 ORTHO05D000064 7.3e-06 55.1 209 24.4
AL3G37150 Arabidopsis lyrata HOM05D000123 ORTHO05D000064 9.5e-06 54.7 104 36.5
Sc19g0003950 Simmondsia chinensis HOM05D000123 ORTHO05D000064 9.5e-06 54.7 78 42.3


User provided reference genes

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