Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8P444T9 Lonicera japonica HOM05D009522 ORTHO05D009846 4.6e-62 241.1 129 100.0
Lj8P473T2 Lonicera japonica HOM05D031498 ORTHO05D016335 8.8e-61 236.9 129 98.4
Rhsim07G0169800 Rhododendron simsii HOM05D033576 ORTHO05D009846 3.4e-12 75.5 102 50.0
Lj7C750T8 Lonicera japonica HOM05D031498 ORTHO05D009846 7.5e-12 74.3 128 43.0
PSO063G5953 Papaver somniferum HOM05D021794 ORTHO05D016335 3.2e-10 68.9 135 37.8
PSO170G4909 Papaver somniferum HOM05D021794 ORTHO05D016335 3.2e-10 68.9 135 37.8
PGR031G3799 Punica granatum HOM05D009522 ORTHO05D009846 4.1e-10 68.6 94 46.8
Peaxi162Scf00459g00082 Petunia axillaris HOM05D009522 ORTHO05D009846 5.4e-10 68.2 44 75.0
Lsat_1_v5_gn_3_25381 Lactuca sativa HOM05D033113 ORTHO05D009846 1.6e-09 66.6 69 53.6
HPP92_015800 Vanilla planifolia HOM05D031498 ORTHO05D016335 1.6e-09 66.6 62 56.5
Dinv21138 Davidia involucrata HOM05D003021 ORTHO05D009846 2.0e-09 66.2 46 76.1
Solyc12g096400.2 Solanum lycopersicum HOM05D009522 ORTHO05D009846 2.0e-09 66.2 117 41.0
Sopen12g032250 Solanum pennellii HOM05D009522 ORTHO05D009846 2.0e-09 66.2 44 72.7
Aqoxy7G02994 Aquilegia oxysepala HOM05D021794 ORTHO05D009846 2.7e-09 65.9 114 43.9
Peaxi162Scf00045g01739 Petunia axillaris HOM05D017514 ORTHO05D009846 2.7e-09 65.9 78 50.0
HPP92_015807 Vanilla planifolia HOM05D031498 ORTHO05D016335 2.7e-09 65.9 62 56.5
MSTRG.11810 Avicennia marina HOM05D009522 ORTHO05D009846 3.5e-09 65.5 44 72.7
HanXRQChr03g0082551 Helianthus annuus HOM05D014278 ORTHO05D009846 3.5e-09 65.5 68 60.3
ECA240G3142 Erigeron canadensis HOM05D009522 ORTHO05D009846 4.6e-09 65.1 40 80.0
Atru.chr7.2642 Acer truncatum HOM05D019337 ORTHO05D009846 6.0e-09 64.7 43 79.1
MSTRG.25778 Avicennia marina HOM05D009522 ORTHO05D009846 7.8e-09 64.3 65 55.4
Prupe.1G460100 Prunus persica HOM05D013263 ORTHO05D009846 7.8e-09 64.3 42 81.0
HPP92_010321 Vanilla planifolia HOM05D027320 ORTHO05D016335 7.8e-09 64.3 103 42.7
Cfa013269 Carpinus fangiana HOM05D014278 ORTHO05D009846 1.0e-08 63.9 41 78.0
Haze_21737 Corylus avellana HOM05D014278 ORTHO05D009846 1.0e-08 63.9 41 78.0
Migut.E01423 Erythranthe guttata HOM05D009522 ORTHO05D009846 1.0e-08 63.9 40 77.5
QL12p025151 Quercus lobata HOM05D013263 ORTHO05D009846 1.0e-08 63.9 123 37.4
SGA_v2.0_scaffold27G11671 Striga asiatica HOM05D009522 ORTHO05D009846 1.0e-08 63.9 114 38.6
Duzib187G1602 Durio zibethinus HOM05D019025 ORTHO05D009846 1.7e-08 63.2 125 42.4
Oeu018569.1 Olea europaea HOM05D009522 ORTHO05D009846 1.7e-08 63.2 113 42.5
Nn8g40403 Nelumbo nucifera HOM05D021794 ORTHO05D016335 2.3e-08 62.8 114 41.2
CAN.G566.64 Capsicum annuum HOM05D009522 ORTHO05D009846 3.0e-08 62.4 119 42.9
Nitab4.5_0001159g0190 Nicotiana tabacum HOM05D009522 ORTHO05D009846 3.0e-08 62.4 135 38.5
Nitab4.5_0010092g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 3.0e-08 62.4 138 38.4
Cc00_g05330 Coffea canephora HOM05D009522 ORTHO05D009846 3.9e-08 62.0 105 46.7
COL.COLO4_19033 Corchorus olitorius HOM05D019025 ORTHO05D009846 3.9e-08 62.0 42 78.6
Thecc.09G007200 Theobroma cacao HOM05D019025 ORTHO05D009846 3.9e-08 62.0 77 54.5
MSTRG.1612 Avicennia marina HOM05D036756 ORTHO05D009846 5.0e-08 61.6 97 47.4
Nitab4.5_0004131g0040 Nicotiana tabacum HOM05D017514 ORTHO05D009846 5.0e-08 61.6 65 50.8
Migut.A00437 Erythranthe guttata HOM05D009522 ORTHO05D009846 6.6e-08 61.2 55 56.4
MD15G1107800 Malus domestica HOM05D013263 ORTHO05D009846 6.6e-08 61.2 86 47.7
Ah.10g033870 Amaranthus hybridus HOM05D016385 ORTHO05D018262 8.6e-08 60.8 79 46.8
EL10Ac2g03757 Beta vulgaris HOM05D016385 ORTHO05D018262 8.6e-08 60.8 84 48.8
Cpa.g.sc23.16 Carica papaya HOM05D013263 ORTHO05D009846 8.6e-08 60.8 107 46.7
SalBow8G0117 Salvia bowleyana HOM05D036756 ORTHO05D009846 8.6e-08 60.8 103 43.7
TWI32G0873 Tripterygium wilfordii HOM05D013263 ORTHO05D009846 8.6e-08 60.8 131 40.5
SalBow8G1342 Salvia bowleyana HOM05D036756 ORTHO05D009846 1.1e-07 60.5 103 42.7
TWI60G1604 Tripterygium wilfordii HOM05D003021 ORTHO05D002235 1.1e-07 60.5 44 72.7
PGSC0003DMG400029280 Solanum tuberosum HOM05D009522 ORTHO05D009846 1.5e-07 60.1 115 41.7
Cc07_g03910 Coffea canephora HOM05D003021 ORTHO05D002235 1.9e-07 59.7 44 70.5
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 1.9e-07 59.7 49 65.3
Lalb_Chr06g0175101 Lupinus albus HOM05D003021 ORTHO05D002235 1.9e-07 59.7 53 60.4
Oeu040384.1 Olea europaea HOM05D009522 ORTHO05D009846 1.9e-07 59.7 122 43.4
TWI34G1417 Tripterygium wilfordii HOM05D014278 ORTHO05D009846 1.9e-07 59.7 122 35.2
unitig_32.g10944 Utricularia gibba HOM05D009522 ORTHO05D009846 1.9e-07 59.7 49 63.3
CANSAT64G0795 Cannabis sativa HOM05D003021 ORTHO05D002235 2.5e-07 59.3 44 70.5
MD08G1128300 Malus domestica HOM05D013263 ORTHO05D009846 2.5e-07 59.3 72 50.0
Nitab4.5_0002023g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 2.5e-07 59.3 76 50.0
Peaxi162Scf00288g00084 Petunia axillaris HOM05D009522 ORTHO05D009846 2.5e-07 59.3 60 56.7
DCAR_011056 Daucus carota HOM05D003021 ORTHO05D002235 3.3e-07 58.9 44 70.5
AUR62042563 Chenopodium quinoa HOM05D003021 ORTHO05D002235 4.3e-07 58.5 66 51.5
Duzib168G1354 Durio zibethinus HOM05D019025 ORTHO05D009846 4.3e-07 58.5 104 41.3
CDE05G2252 Ceratophyllum demersum HOM05D003021 ORTHO05D002235 5.6e-07 58.2 140 35.7
COL.COLO4_21376 Corchorus olitorius HOM05D003021 ORTHO05D002235 5.6e-07 58.2 44 70.5
Duzib147G0806 Durio zibethinus HOM05D003021 ORTHO05D002235 5.6e-07 58.2 44 70.5
Duzib187G0754 Durio zibethinus HOM05D003021 ORTHO05D002235 5.6e-07 58.2 44 70.5
Gohir.A05G370400 Gossypium hirsutum HOM05D003021 ORTHO05D002235 5.6e-07 58.2 44 70.5
Gohir.D04G045100 Gossypium hirsutum HOM05D003021 ORTHO05D002235 5.6e-07 58.2 44 70.5
Gorai.012G050300 Gossypium raimondii HOM05D003021 ORTHO05D002235 5.6e-07 58.2 44 70.5
PSO013G0053 Papaver somniferum HOM05D003021 ORTHO05D002235 5.6e-07 58.2 76 50.0
PSO063G0327 Papaver somniferum HOM05D003021 ORTHO05D002235 5.6e-07 58.2 76 50.0
Rhsim08G0073600 Rhododendron simsii HOM05D003021 ORTHO05D002235 5.6e-07 58.2 49 63.3
Hund03292 Selenicereus undatus HOM05D016385 ORTHO05D018262 5.6e-07 58.2 42 71.4
Sopen03g034540 Solanum pennellii HOM05D003021 ORTHO05D022173 5.6e-07 58.2 70 50.0
Thecc.04G090900 Theobroma cacao HOM05D003021 ORTHO05D002235 5.6e-07 58.2 44 70.5
TAR629G0828 Trochodendron aralioides HOM05D003021 ORTHO05D002235 5.6e-07 58.2 50 62.0
Lsat_1_v5_gn_4_170321 Lactuca sativa HOM05D003021 ORTHO05D002235 7.3e-07 57.8 44 68.2
Nitab4.5_0000555g0230 Nicotiana tabacum HOM05D017514 ORTHO05D009846 7.3e-07 57.8 89 43.8
QL02p039488 Quercus lobata HOM05D003021 ORTHO05D002235 7.3e-07 57.8 73 47.9
SGA_v2.0_scaffold121G33031 Striga asiatica HOM05D009522 ORTHO05D009846 7.3e-07 57.8 38 73.7
THA.LOC104814972 Tarenaya hassleriana HOM05D008799 ORTHO05D010975 7.3e-07 57.8 125 38.4
TAR371G0449 Trochodendron aralioides HOM05D003021 ORTHO05D002235 7.3e-07 57.8 44 68.2
CSS0009627 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 9.5e-07 57.4 44 68.2
CSS0042635 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 9.5e-07 57.4 44 68.2
CAN.G673.17 Capsicum annuum HOM05D017514 ORTHO05D009846 9.5e-07 57.4 42 64.3
Ca_04869_v3 Cicer arietinum L. HOM05D003021 ORTHO05D002235 9.5e-07 57.4 103 42.7
ClCG11G004640 Citrullus lanatus HOM05D003021 ORTHO05D002235 9.5e-07 57.4 67 52.2
Lalb_Chr07g0178231 Lupinus albus HOM05D014856 ORTHO05D002235 9.5e-07 57.4 47 61.7
MD09G1061400 Malus domestica HOM05D003021 ORTHO05D002235 9.5e-07 57.4 44 68.2
Sed0005734 Sechium edule HOM05D003021 ORTHO05D002235 9.5e-07 57.4 75 49.3
PGSC0003DMG400024656 Solanum tuberosum HOM05D003021 ORTHO05D022173 9.5e-07 57.4 77 49.4
Ah.11g043860 Amaranthus hybridus HOM05D016385 ORTHO05D018262 1.2e-06 57.0 47 63.8
MELO3C022022.2 Cucumis melo HOM05D003021 ORTHO05D002235 1.2e-06 57.0 74 51.4
CsaV3_5G038410 Cucumis sativus L. HOM05D003021 ORTHO05D002235 1.2e-06 57.0 74 51.4
FAN20G1345 Fragaria x ananassa HOM05D013263 ORTHO05D009846 1.2e-06 57.0 119 42.9
Nn3g17378 Nelumbo nucifera HOM05D003021 ORTHO05D002235 1.2e-06 57.0 69 49.3
Solyc08g069020.1 Solanum lycopersicum HOM05D009522 ORTHO05D009846 1.2e-06 57.0 44 70.5
CAN.G908.7 Capsicum annuum HOM05D009522 ORTHO05D009846 1.6e-06 56.6 125 37.6
Lalb_Chr08g0243541 Lupinus albus HOM05D013197 ORTHO05D012811 1.6e-06 56.6 70 44.3
Potri.017G090200 Populus trichocarpa HOM05D003021 ORTHO05D002235 1.6e-06 56.6 43 69.8
HPP92_010149 Vanilla planifolia HOM05D040231 ORTHO05D002235 1.6e-06 56.6 35 77.1
ATR0564G160 Amborella trichopoda HOM05D003021 ORTHO05D002235 2.1e-06 56.2 116 37.1
CAN.G479.38 Capsicum annuum HOM05D003021 ORTHO05D022173 2.1e-06 56.2 70 50.0
CiPaw.07G212500 Carya illinoinensis HOM05D013263 ORTHO05D009846 2.1e-06 56.2 133 40.6
AUR62018150 Chenopodium quinoa HOM05D003021 ORTHO05D002235 2.1e-06 56.2 45 62.2
Ciclev10011360m.g Citrus clementina HOM05D003021 ORTHO05D002235 2.1e-06 56.2 68 52.9
DCAR_003022 Daucus carota HOM05D009522 ORTHO05D009846 2.1e-06 56.2 121 36.4
Lj9P468T32 Lonicera japonica HOM05D003021 ORTHO05D002235 2.1e-06 56.2 38 73.7
Lj4g0020297 Lotus japonicus HOM05D014856 ORTHO05D002235 2.1e-06 56.2 45 64.4
Manes.16G135600 Manihot esculenta HOM05D014278 ORTHO05D009846 2.1e-06 56.2 136 38.2
Nitab4.5_0001211g0040 Nicotiana tabacum HOM05D003021 ORTHO05D022173 2.1e-06 56.2 46 60.9
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 2.1e-06 56.2 60 55.0
RcHm_v2.0_Chr7g0182331 Rosa chinensis HOM05D003021 ORTHO05D002235 2.1e-06 56.2 44 68.2
CiPaw.03G091400 Carya illinoinensis HOM05D003021 ORTHO05D002235 2.8e-06 55.8 44 65.9
FAN27G1111 Fragaria x ananassa HOM05D013263 ORTHO05D009846 2.8e-06 55.8 120 40.0
HanXRQChr15g0488721 Helianthus annuus HOM05D003021 ORTHO05D002235 2.8e-06 55.8 69 53.6
Oeu000639.1 Olea europaea HOM05D003021 ORTHO05D002235 2.8e-06 55.8 70 48.6
Peaxi162Scf00274g00005 Petunia axillaris HOM05D003021 ORTHO05D022173 2.8e-06 55.8 46 60.9
Phvul.003G186900 Phaseolus vulgaris HOM05D014856 ORTHO05D002235 2.8e-06 55.8 48 64.6
Sopen08g002390 Solanum pennellii HOM05D017514 ORTHO05D009846 2.8e-06 55.8 34 79.4
PGSC0003DMG400026295 Solanum tuberosum HOM05D017514 ORTHO05D009846 2.8e-06 55.8 34 79.4
Zm00001eb400410 Zea mays HOM05D003021 ORTHO05D002235 2.8e-06 55.8 44 68.2
AL7G50940 Arabidopsis lyrata HOM05D003021 ORTHO05D002235 3.6e-06 55.5 65 47.7
Carub.0007s3655 Capsella rubella HOM05D003021 ORTHO05D002235 3.6e-06 55.5 62 51.6
Gohir.D09G010600 Gossypium hirsutum HOM05D003021 ORTHO05D002235 3.6e-06 55.5 44 63.6
Manes.01G099000 Manihot esculenta HOM05D003021 ORTHO05D002235 3.6e-06 55.5 72 47.2
Medtr3g108830 Medicago truncatula HOM05D013197 ORTHO05D009846 3.6e-06 55.5 40 72.5
Prupe.3G258800 Prunus persica HOM05D003021 ORTHO05D002235 3.6e-06 55.5 44 65.9
PGR083G2506 Punica granatum HOM05D003021 ORTHO05D002235 3.6e-06 55.5 44 68.2
Sabra17G0079400 Salix brachista HOM05D003021 ORTHO05D002235 3.6e-06 55.5 43 67.4
SalBow1G6367 Salvia bowleyana HOM05D003021 ORTHO05D002235 3.6e-06 55.5 50 60.0
Sp7g02590 Schrenkiella parvula HOM05D003021 ORTHO05D002235 3.6e-06 55.5 82 41.5
MSTRG.13944 Avicennia marina HOM05D009522 ORTHO05D009846 4.7e-06 55.1 114 37.7
BcaB01g05649 Brassica carinata HOM05D009040 ORTHO05D002235 4.7e-06 55.1 81 45.7
C03p03900 Brassica napus HOM05D009040 ORTHO05D002235 4.7e-06 55.1 81 45.7
Cfa007625 Carpinus fangiana HOM05D003021 ORTHO05D002235 4.7e-06 55.1 90 43.3
CDE05G3476 Ceratophyllum demersum HOM05D003021 ORTHO05D002235 4.7e-06 55.1 142 34.5
Ca_21794_v3 Cicer arietinum L. HOM05D014856 ORTHO05D002235 4.7e-06 55.1 105 43.8
Haze_14471 Corylus avellana HOM05D003021 ORTHO05D002235 4.7e-06 55.1 100 41.0
Dinv10680 Davidia involucrata HOM05D003021 ORTHO05D002235 4.7e-06 55.1 62 53.2
Dinv11486 Davidia involucrata HOM05D003021 ORTHO05D002235 4.7e-06 55.1 44 68.2
ECA232G0555 Erigeron canadensis HOM05D003021 ORTHO05D002235 4.7e-06 55.1 79 49.4
FAN13G0757 Fragaria x ananassa HOM05D003021 ORTHO05D002235 4.7e-06 55.1 41 68.3
Phvul.004G033600 Phaseolus vulgaris HOM05D003021 ORTHO05D002235 4.7e-06 55.1 44 65.9
Prupe.5G200000 Prunus persica HOM05D003021 ORTHO05D002235 4.7e-06 55.1 44 65.9
Actinidia01976 Actinidia chinensis HOM05D003021 ORTHO05D002235 6.2e-06 54.7 100 42.0
Aqoxy3G03562 Aquilegia oxysepala HOM05D003021 ORTHO05D002235 6.2e-06 54.7 43 65.1
FAN08G3689 Fragaria x ananassa HOM05D003021 ORTHO05D002235 6.2e-06 54.7 44 68.2
FAN15G3280 Fragaria x ananassa HOM05D013263 ORTHO05D009846 6.2e-06 54.7 120 39.2
Glyma.17G076200 Glycine max HOM05D014856 ORTHO05D002235 6.2e-06 54.7 132 37.9
Gohir.A09G011600 Gossypium hirsutum HOM05D003021 ORTHO05D002235 6.2e-06 54.7 44 63.6
MD14G1207900 Malus domestica HOM05D003021 ORTHO05D002235 6.2e-06 54.7 43 69.8
Nitab4.5_0000502g0110 Nicotiana tabacum HOM05D009522 ORTHO05D009846 6.2e-06 54.7 126 39.7
Ciclev10010613m.g Citrus clementina HOM05D014278 ORTHO05D009846 8.1e-06 54.3 103 43.7
Thhalv10027728m.g Eutrema salsugineum HOM05D003021 ORTHO05D002235 8.1e-06 54.3 65 47.7
HanXRQChr09g0264151 Helianthus annuus HOM05D003021 ORTHO05D002235 8.1e-06 54.3 44 68.2
Lsat_1_v5_gn_5_62161 Lactuca sativa HOM05D021794 ORTHO05D016335 8.1e-06 54.3 81 45.7
Oeu062145.1 Olea europaea HOM05D003021 ORTHO05D002235 8.1e-06 54.3 79 46.8
Potri.006G274600 Populus trichocarpa HOM05D014278 ORTHO05D009846 8.1e-06 54.3 102 40.2
RcHm_v2.0_Chr2g0166531 Rosa chinensis HOM05D003021 ORTHO05D002235 8.1e-06 54.3 83 45.8
Sed0008235 Sechium edule HOM05D019337 ORTHO05D009846 8.1e-06 54.3 42 66.7


User provided reference genes

Program Settings