Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj8P290T52 Lonicera japonica HOM05D002860 ORTHO05D003123 1.1e-79 300.1 167 100.0
Lsat_1_v5_gn_3_16220 Lactuca sativa HOM05D002860 ORTHO05D003123 6.7e-37 157.9 175 51.4
QL12p006742 Quercus lobata HOM05D002860 ORTHO05D003123 1.7e-35 153.3 165 52.1
Cfa012399 Carpinus fangiana HOM05D002860 ORTHO05D003123 3.7e-35 152.1 165 49.7
QL12p006747 Quercus lobata HOM05D002860 ORTHO05D003123 8.2e-35 151.0 165 51.5
Haze_08280 Corylus avellana HOM05D002860 ORTHO05D003123 2.4e-34 149.4 165 49.1
Haze_08285 Corylus avellana HOM05D002860 ORTHO05D003123 2.4e-34 149.4 165 49.1
TAR636G2618 Trochodendron aralioides HOM05D002860 ORTHO05D003123 2.4e-34 149.4 169 52.1
Cc08_g02320 Coffea canephora HOM05D002860 ORTHO05D003123 3.1e-34 149.1 173 52.0
CAN.G201.13 Capsicum annuum HOM05D002860 ORTHO05D003123 5.3e-34 148.3 167 50.3
Actinidia14826 Actinidia chinensis HOM05D002860 ORTHO05D003123 5.9e-33 144.8 166 51.8
DCAR_031778 Daucus carota HOM05D002860 ORTHO05D003123 7.7e-33 144.4 166 50.0
Sopen06g021260 Solanum pennellii HOM05D002860 ORTHO05D003123 1.3e-32 143.7 167 53.9
ECA232G4950 Erigeron canadensis HOM05D002860 ORTHO05D003123 1.7e-32 143.3 180 45.0
PGSC0003DMG400026598 Solanum tuberosum HOM05D002860 ORTHO05D003123 2.2e-32 142.9 167 48.5
Nitab4.5_0004658g0030 Nicotiana tabacum HOM05D002860 ORTHO05D003123 2.5e-31 139.4 169 46.7
CSS0031146 Camellia sinensis var. sinensis HOM05D002860 ORTHO05D003123 9.4e-31 137.5 167 49.7
CSS0043452 Camellia sinensis var. sinensis HOM05D002860 ORTHO05D003123 9.4e-31 137.5 167 49.7
Nitab4.5_0003100g0050 Nicotiana tabacum HOM05D002860 ORTHO05D003123 9.4e-31 137.5 169 46.2
Thecc.03G232700 Theobroma cacao HOM05D002860 ORTHO05D003123 9.4e-31 137.5 168 47.6
CiPaw.11G089800 Carya illinoinensis HOM05D002860 ORTHO05D003123 2.1e-30 136.3 189 45.0
RcHm_v2.0_Chr7g0208871 Rosa chinensis HOM05D002860 ORTHO05D003123 3.6e-30 135.6 181 42.5
Actinidia09228 Actinidia chinensis HOM05D002860 ORTHO05D003123 7.9e-30 134.4 165 50.3
Dinv25193 Davidia involucrata HOM05D002860 ORTHO05D003123 7.9e-30 134.4 164 50.6
CANSAT21G1896 Cannabis sativa HOM05D002860 ORTHO05D003123 1.4e-29 133.7 175 52.0
Prupe.5G042700 Prunus persica HOM05D002860 ORTHO05D003123 2.3e-29 132.9 166 45.2
Atru.chr6.1762 Acer truncatum HOM05D002860 ORTHO05D003123 2.0e-28 129.8 168 51.2
Rhsim07G0123700 Rhododendron simsii HOM05D002860 ORTHO05D003123 4.4e-28 128.6 172 49.4
Gorai.004G187800 Gossypium raimondii HOM05D002860 ORTHO05D003123 3.7e-27 125.6 172 43.0
Potri.001G145400 Populus trichocarpa HOM05D002860 ORTHO05D003123 4.8e-27 125.2 166 44.0
EL10Ac5g12150 Beta vulgaris HOM05D002860 ORTHO05D003123 6.3e-27 124.8 184 43.5
HanXRQChr06g0167271 Helianthus annuus HOM05D002860 ORTHO05D003123 8.2e-27 124.4 168 47.6
Sabra03G0058500 Salix brachista HOM05D002860 ORTHO05D003123 8.2e-27 124.4 166 44.6
Dinv28924 Davidia involucrata HOM05D002067 ORTHO05D002244 1.1e-26 124.0 128 53.9
FAN08G2852 Fragaria x ananassa HOM05D002860 ORTHO05D003123 1.1e-26 124.0 183 41.0
Gohir.D08G179300 Gossypium hirsutum HOM05D002860 ORTHO05D003123 1.1e-26 124.0 172 43.0
FvH4_5g21440 Fragaria vesca HOM05D002860 ORTHO05D003123 1.4e-26 123.6 183 41.0
Duzib205G1594 Durio zibethinus HOM05D002860 ORTHO05D003123 1.8e-26 123.2 172 46.5
Nn6g33644 Nelumbo nucifera HOM05D002860 ORTHO05D003123 1.8e-26 123.2 178 47.8
FAN18G2301 Fragaria x ananassa HOM05D002860 ORTHO05D003123 2.4e-26 122.9 183 41.0
Oeu006002.1 Olea europaea HOM05D002860 ORTHO05D003123 2.4e-26 122.9 167 43.7
Potri.003G088500 Populus trichocarpa HOM05D002860 ORTHO05D003123 1.2e-25 120.6 166 50.6
Gohir.A08G158900 Gossypium hirsutum HOM05D002860 ORTHO05D003123 1.5e-25 120.2 175 49.1
TWI81G0281 Tripterygium wilfordii HOM05D002860 ORTHO05D003123 1.5e-25 120.2 165 43.6
Ah.07g200200 Amaranthus hybridus HOM05D002860 ORTHO05D003123 2.0e-25 119.8 181 41.4
COL.COLO4_17095 Corchorus olitorius HOM05D002860 ORTHO05D003123 2.0e-25 119.8 168 43.5
Sabra01G0114000 Salix brachista HOM05D002860 ORTHO05D003123 2.2e-24 116.3 166 42.2
GSVIVG01013169001 Vitis vinifera HOM05D002860 ORTHO05D003123 2.9e-24 115.9 155 45.8
arahy.Tifrunner.gnm1.ann1.VQ0QE9 Arachis hypogaea HOM05D002860 ORTHO05D003123 1.4e-23 113.6 167 40.7
arahy.Tifrunner.gnm1.ann1.YYB4W1 Arachis hypogaea HOM05D002860 ORTHO05D003123 1.4e-23 113.6 167 40.7
Lalb_Chr09g0323901 Lupinus albus HOM05D002860 ORTHO05D003123 2.5e-23 112.8 193 38.3
Eucgr.D02165 Eucalyptus grandis HOM05D002860 ORTHO05D003123 9.4e-23 110.9 165 40.0
TWI60G0122 Tripterygium wilfordii HOM05D002860 ORTHO05D003123 9.4e-23 110.9 182 36.3
PSO541G0690 Papaver somniferum HOM05D002860 ORTHO05D003123 2.7e-22 109.4 167 41.9
Sc07g0008860 Simmondsia chinensis HOM05D002860 ORTHO05D003123 2.7e-22 109.4 176 41.5
MSTRG.1975 Avicennia marina HOM05D002860 ORTHO05D003123 3.6e-22 109.0 173 44.5
MELO3C013870.2 Cucumis melo HOM05D002860 ORTHO05D003123 3.6e-22 109.0 188 38.3
Migut.E01648 Erythranthe guttata HOM05D002860 ORTHO05D003123 4.7e-22 108.6 170 39.4
Lj2g0020542 Lotus japonicus HOM05D002860 ORTHO05D003123 4.7e-22 108.6 168 38.1
Ciclev10031629m.g Citrus clementina HOM05D002860 ORTHO05D003123 8.0e-22 107.8 192 40.6
PSO675G2471 Papaver somniferum HOM05D002860 ORTHO05D003123 8.0e-22 107.8 167 39.5
FAN13G2849 Fragaria x ananassa HOM05D002860 ORTHO05D003123 1.4e-21 107.1 174 39.1
VMungo1215G0410 Vigna mungo HOM05D002860 ORTHO05D003123 3.9e-21 105.5 173 39.3
MD06G1029200 Malus domestica HOM05D002860 ORTHO05D003123 8.8e-21 104.4 92 53.3
Phvul.002G005500 Phaseolus vulgaris HOM05D002860 ORTHO05D003123 8.8e-21 104.4 170 39.4
Glyma.11G041800 Glycine max HOM05D002860 ORTHO05D003123 2.0e-20 103.2 174 42.5
Manes.15G170400 Manihot esculenta HOM05D002860 ORTHO05D003123 2.0e-20 103.2 166 39.8
PGR031G1823 Punica granatum HOM05D002860 ORTHO05D003123 4.4e-20 102.1 167 40.1
Solyc06g061050.4 Solanum lycopersicum HOM05D002860 ORTHO05D003123 4.4e-20 102.1 135 54.1
TPR.G27532 Trifolium pratense HOM05D002860 ORTHO05D003123 7.4e-20 101.3 167 40.1
HanXRQChr17g0535781 Helianthus annuus HOM05D001323 ORTHO05D001223 9.7e-20 100.9 122 44.3
Ca_24638_v3 Cicer arietinum L. HOM05D002860 ORTHO05D003123 2.2e-19 99.8 170 40.0
Aqoxy3G02473 Aquilegia oxysepala HOM05D002860 ORTHO05D003123 4.8e-19 98.6 175 39.4
CsaV3_3G001990 Cucumis sativus L. HOM05D002860 ORTHO05D003123 8.2e-19 97.8 201 33.3
Sed0007655 Sechium edule HOM05D002860 ORTHO05D003123 3.1e-18 95.9 188 36.2
AUR62007262 Chenopodium quinoa HOM05D002860 ORTHO05D003123 1.3e-16 90.5 178 37.1
SGA_v2.0_scaffold20G09224 Striga asiatica HOM05D002860 ORTHO05D003123 3.6e-14 82.4 184 34.8
Psat2g173760 Pisum sativum HOM05D002860 ORTHO05D003123 1.4e-13 80.5 166 33.1
CiPaw.12G061300 Carya illinoinensis HOM05D002860 ORTHO05D003123 1.8e-13 80.1 99 43.4
Medtr5g014110 Medicago truncatula HOM05D002860 ORTHO05D003123 1.2e-12 77.4 165 33.3
Cpa.g.sc6.422 Carica papaya HOM05D002860 ORTHO05D003123 6.3e-11 71.6 96 37.5
ATR0049G071 Amborella trichopoda HOM05D002860 ORTHO05D003123 3.5e-09 65.9 182 33.5
Ciclev10024459m.g Citrus clementina HOM05D002860 ORTHO05D003123 2.2e-08 63.2 61 60.7
Ciclev10003586m.g Citrus clementina HOM05D002860 ORTHO05D003123 6.5e-08 61.6 66 48.5
Ciclev10003666m.g Citrus clementina HOM05D002860 ORTHO05D003123 5.5e-07 58.5 66 45.5


User provided reference genes

Program Settings